Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009516.1

Orthogroup ID

OG0012721

Physical Location & Seq

Genomic Coordinates Reverse (-)

41725 .. 44892

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009516.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgccgcaaaccgttcccgtcgccggcaagcaccatcaccaccaccctgcggcctcaccacattatgataccgcccttccaccttgccaaaaagcaagcaaaggatcccatctgccgcgatttgaccgcatccaccataaccccaatcgcctggtcgatgacactataacccacagccgggaagaaagaatctgccacagccccagaaccgtcgtcgctcccgatccgagagggacagatcgagatcgatctgcccaactcgaggtcaagaacccaccctcctcccctagatcacgtctctgccttgaggactcgccactaaccatcaacgacatcccctcctgggccggaacgcaacggcgggaacgacggtggcgtttggcaaagagagaacgagcagactccaggtttacgttttcttcttcgggcgtgggggacccggcggtgctggctcatgaagcaaacaagggactcgagattgcagtcaggattttggagccgatcaaggagcagtttccgattctctcatatgcagacttctaccagttggctggagtagtagctgtagaagtaacaggagggcccgagattcctttccaccctggtagaccggacaaagaagaagcaccaccggaaggtcgcttgcctaatgccaacaaaggtgtggatcatttgagggatgtgtttggccatatgggtctcagtgacaaggacattgttgcattatctggtggacacaccttgggtaggtgccacaaggagcgctctggatttgagggaccctggacaaccaatcccctcattttcgacaactcctatttcaaggaacttattagtggagagaaggaaggtctgatccagcttccatcagataaggctcttcttgaggatccagtttttcgtacttttgtcgagacctatgctgcggatgaggatgctttctttgctgactatgctgaagctcatttgaagctttcagagcttggatttgcagataccgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

334

Amino Acids

37.19

Weight (kDa)

6.06

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09640 AT3G09640
fragaria_vesca	FvH4_6g15200 FvH4_6g15200
malus_domestica	MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica	Prupe.6G242200_v2.0.a1
pyrus_communis	pycom04g10030 pycom12g12390
rosa_chinensis	RchiOBHm_Chr3g0468551
rosa_laevigata	RLG00000024423
rosa_multiflora	Rmu_sc0009516.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412700
rosa_rugosa	Rorug03G0095800 Rorug03G0095900
rosa_samantha	Rh3BG166500 Rh3DG165900
rosa_wichuraiana	Rw3G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	750
AccI	GTMKAC	1 cut(s)	607
AccII	CGCG	1 cut(s)	118
AciI	CCGC	8 cut(s)	5, 50, 72, 116, 127, 361, 443, 926
AclWI	GGATC	7 cut(s)	99, 112, 218, 675, 850, 884, 897
AcoI	YGGCCR	1 cut(s)	688
AcuI	CTGAAG	1 cut(s)	978
AfaI	GTAC	1 cut(s)	904
AfeI	AGCGCT	1 cut(s)	764
AfiI	CCNNNNNNNGG	8 cut(s)	23, 49, 177, 178, 262, 343, 635, 747
AgsI	TTSAA	2 cut(s)	823, 970
AjiI	CACGTC	1 cut(s)	296
AjnI	CCWGG	5 cut(s)	150, 341, 404, 601, 782
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	5 cut(s)	563, 862, 962, 973, 982
AluI	AGCT	5 cut(s)	563, 862, 962, 973, 982
Alw26I	GTCTC	3 cut(s)	302, 704, 908
AlwI	GGATC	7 cut(s)	99, 112, 218, 675, 850, 884, 897
Ama87I	CYCGRG	3 cut(s)	260, 473, 584
Aor51HI	AGCGCT	1 cut(s)	764
AoxI	GGCC	4 cut(s)	51, 345, 581, 688
ApaI	GGGCCC	1 cut(s)	585
ApeKI	GCWGC	1 cut(s)	923
AspLEI	GCGC	1 cut(s)	765
AspS9I	GGNCC	5 cut(s)	345, 436, 581, 582, 779
AsuC2I	CCSGG	2 cut(s)	179, 440
AsuHPI	GGTGA	2 cut(s)	29, 48
AvaI	CYCGRG	3 cut(s)	260, 473, 584
AvaII	GGWCC	2 cut(s)	436, 779
BaeGI	GKGCMC	1 cut(s)	585
BalI	TGGCCA	1 cut(s)	690
BamHI	GGATCC	2 cut(s)	104, 889
BanI	GGYRCC	1 cut(s)	750
BanII	GRGCYC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	910
BccI	CCATC	4 cut(s)	42, 117, 332, 874
BceAI	ACGGC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	902, 936
BciT130I	CCWGG	5 cut(s)	152, 343, 406, 603, 784
BcnI	CCSGG	2 cut(s)	179, 440
BcoDI	GTCTC	3 cut(s)	302, 704, 908
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	766
BisI	GCNGC	4 cut(s)	5, 51, 116, 924
BlsI	GCNGC	4 cut(s)	6, 52, 117, 925
Bme1390I	CCNGG	7 cut(s)	152, 179, 343, 406, 440, 603, 784
Bme18I	GGWCC	2 cut(s)	436, 779
BmeT110I	CYCGRG	3 cut(s)	260, 473, 584
BmgBI	CACGTC	1 cut(s)	296
BmgT120I	GGNCC	5 cut(s)	345, 436, 581, 582, 779
BmiI	GGNNCC	9 cut(s)	106, 437, 438, 498, 583, 752, 780, 781, 891
BmrFI	CCNGG	7 cut(s)	152, 179, 343, 406, 440, 603, 784
BmsI	GCATC	2 cut(s)	138, 925
BpmI	CTGGAG	2 cut(s)	388, 573
BpuEI	CTTGAG	2 cut(s)	326, 905
BpuMI	CCSGG	2 cut(s)	179, 440
Bsa29I	ATCGAT	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	243
BsaI	GGTCTC	2 cut(s)	704, 908
BsaJI	CCNNGG	4 cut(s)	342, 601, 741, 782
BsaWI	WCCGGW	2 cut(s)	610, 631
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 323, 353
Bsc4I	CCNNNNNNNGG	8 cut(s)	23, 49, 177, 178, 262, 343, 635, 747
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	544, 893
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	5 cut(s)	152, 343, 406, 603, 784
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	4 cut(s)	342, 601, 741, 782
BseGI	GGATG	5 cut(s)	129, 333, 685, 934, 940
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	8 cut(s)	23, 49, 177, 178, 262, 343, 635, 747
BseMII	CTCAG	1 cut(s)	715
BseNI	ACTGG	2 cut(s)	544, 893
BseRI	GAGGAG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	910
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	4 cut(s)	53, 347, 583, 690
BshNI	GGYRCC	1 cut(s)	750
BshVI	ATCGAT	1 cut(s)	247
BsiHKCI	CYCGRG	3 cut(s)	260, 473, 584
BsiSI	CCGG	6 cut(s)	24, 178, 348, 440, 611, 632
BslFI	GGGAC	4 cut(s)	247, 449, 483, 792
BslI	CCNNNNNNNGG	8 cut(s)	23, 49, 177, 178, 262, 343, 635, 747
BsmAI	GTCTC	3 cut(s)	302, 704, 908
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	4 cut(s)	247, 449, 483, 792
BsnI	GGCC	4 cut(s)	53, 347, 583, 690
Bso31I	GGTCTC	2 cut(s)	704, 908
BsoBI	CYCGRG	3 cut(s)	260, 473, 584
Bsp120I	GGGCCC	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	585
BspACI	CCGC	8 cut(s)	5, 50, 72, 116, 127, 361, 443, 926
BspANI	GGCC	4 cut(s)	53, 347, 583, 690
BspCNI	CTCAG	1 cut(s)	714
BspDI	ATCGAT	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	9 cut(s)	106, 437, 438, 498, 583, 752, 780, 781, 891
BspPI	GGATC	7 cut(s)	99, 112, 218, 675, 850, 884, 897
BspQI	GCTCTTC	1 cut(s)	885
BspT107I	GGYRCC	1 cut(s)	750
BspTNI	GGTCTC	2 cut(s)	704, 908
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	544, 893
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	4 cut(s)	342, 601, 741, 782
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	5 cut(s)	152, 343, 406, 603, 784
Bst4CI	ACNGT	3 cut(s)	13, 211, 372
Bst6I	CTCTTC	1 cut(s)	885
BstC8I	GCNNGC	5 cut(s)	25, 29, 97, 450, 644
BstDEI	CTNAG	1 cut(s)	701
BstENI	CCTNNNNNAGG	1 cut(s)	745
BstF5I	GGATG	5 cut(s)	129, 333, 685, 934, 940
BstFNI	CGCG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	766
BstHHI	GCGC	1 cut(s)	765
BstMAI	GTCTC	3 cut(s)	302, 704, 908
BstMWI	GCNNNNNNNGC	5 cut(s)	449, 458, 944, 953, 979
BstNI	CCWGG	5 cut(s)	152, 343, 406, 603, 784
BstSCI	CCNGG	7 cut(s)	150, 177, 341, 404, 438, 601, 782
BstSFI	CTRYAG	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	585
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	910
BstX2I	RGATCY	2 cut(s)	104, 889
BstXI	CCANNNNNNTGG	2 cut(s)	151, 551
BstYI	RGATCY	2 cut(s)	104, 889
Bsu15I	ATCGAT	1 cut(s)	247
BsuRI	GGCC	4 cut(s)	53, 347, 583, 690
BsuTUI	ATCGAT	1 cut(s)	247
BtrI	CACGTC	1 cut(s)	296
BtsCI	GGATG	5 cut(s)	129, 333, 685, 934, 940
BtsIMutI	CAGTG	1 cut(s)	709
Cac8I	GCNNGC	5 cut(s)	25, 29, 97, 450, 644
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	765
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	5 cut(s)	345, 436, 581, 582, 779
ClaI	ATCGAT	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	903
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	1 cut(s)	903
DdeI	CTNAG	1 cut(s)	701
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	585
Eco31I	GGTCTC	2 cut(s)	704, 908
Eco47I	GGWCC	2 cut(s)	436, 779
Eco47III	AGCGCT	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	978
Eco88I	CYCGRG	3 cut(s)	260, 473, 584
EcoNI	CCTNNNNNAGG	1 cut(s)	745
EcoO109I	RGGNCCY	3 cut(s)	436, 581, 779
EcoRII	CCWGG	5 cut(s)	150, 341, 404, 601, 782
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	1 cut(s)	458
FaqI	GGGAC	4 cut(s)	247, 449, 483, 792
FatI	CATG	1 cut(s)	454
FauI	CCCGC	1 cut(s)	354
FauNDI	CATATG	2 cut(s)	529, 693
FblI	GTMKAC	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	5, 51, 116, 924
FokI	GGATG	5 cut(s)	116, 320, 692, 941, 947
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	4 cut(s)	5, 51, 116, 924
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	764
GluI	GCNGC	4 cut(s)	5, 51, 116, 924
GsuI	CTGGAG	2 cut(s)	388, 573
HaeII	RGCGCY	1 cut(s)	766
HaeIII	GGCC	4 cut(s)	53, 347, 583, 690
HapII	CCGG	6 cut(s)	24, 178, 348, 440, 611, 632
HhaI	GCGC	1 cut(s)	765
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	763
HinP1I	GCGC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	971
HinfI	GANTC	6 cut(s)	189, 311, 401, 471, 520, 589
HpaII	CCGG	6 cut(s)	24, 178, 348, 440, 611, 632
HphI	GGTGA	2 cut(s)	29, 48
Hpy166II	GTNNAC	3 cut(s)	411, 608, 734
Hpy188I	TCNGA	5 cut(s)	228, 519, 855, 871, 979
Hpy188III	TCNNGA	9 cut(s)	221, 242, 268, 455, 475, 487, 768, 884, 913
Hpy8I	GTNNAC	3 cut(s)	411, 608, 734
Hpy99I	CGWCG	4 cut(s)	23, 215, 218, 372
HpyAV	CCTTC	4 cut(s)	86, 629, 838, 842
HpyCH4III	ACNGT	3 cut(s)	13, 211, 372
HpyCH4IV	ACGT	2 cut(s)	295, 413
HpyCH4V	TGCA	4 cut(s)	482, 533, 722, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	449, 458, 944, 953, 979
HpyF3I	CTNAG	1 cut(s)	701
HpySE526I	ACGT	2 cut(s)	295, 413
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	1 cut(s)	763
KflI	GGGWCCC	2 cut(s)	436, 779
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
LguI	GCTCTTC	1 cut(s)	885
LmnI	GCTCC	4 cut(s)	223, 496, 508, 760
Lsp1109I	GCAGC	1 cut(s)	910
LweI	GCATC	2 cut(s)	138, 925
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	2 cut(s)	295, 413
MaeIII	GTNAC	2 cut(s)	571, 704
MboII	GAAGA	5 cut(s)	194, 411, 414, 632, 872
MflI	RGATCY	2 cut(s)	104, 889
MhlI	GDGCHC	1 cut(s)	585
MlsI	TGGCCA	1 cut(s)	690
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	3 cut(s)	305, 395, 465
Mox20I	TGGCCA	1 cut(s)	690
MroNI	GCCGGC	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	690
MspI	CCGG	6 cut(s)	24, 178, 348, 440, 611, 632
MspR9I	CCNGG	7 cut(s)	152, 179, 343, 406, 440, 603, 784
MvaI	CCWGG	5 cut(s)	152, 343, 406, 603, 784
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	5 cut(s)	449, 458, 944, 953, 979
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	2 cut(s)	179, 440
NdeI	CATATG	2 cut(s)	529, 693
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	9 cut(s)	106, 437, 438, 498, 583, 752, 780, 781, 891
NmuCI	GTSAC	1 cut(s)	704
PaeR7I	CTCGAG	2 cut(s)	260, 473
PagI	TCATGA	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	885
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 364, 373
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	189, 520, 589
PkrI	GCNGC	4 cut(s)	6, 52, 117, 925
PleI	GAGTC	3 cut(s)	305, 395, 465
PpsI	GAGTC	3 cut(s)	305, 395, 465
PpuMI	RGGWCCY	2 cut(s)	436, 779
Psp5II	RGGWCCY	2 cut(s)	436, 779
Psp6I	CCWGG	5 cut(s)	150, 341, 404, 601, 782
PspGI	CCWGG	5 cut(s)	150, 341, 404, 601, 782
PspN4I	GGNNCC	9 cut(s)	106, 437, 438, 498, 583, 752, 780, 781, 891
PspOMI	GGGCCC	1 cut(s)	581
PspPI	GGNCC	5 cut(s)	345, 436, 581, 582, 779
PspPPI	RGGWCCY	2 cut(s)	436, 779
PspXI	VCTCGAGB	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	104, 889
RsaI	GTAC	1 cut(s)	904
RsaNI	GTAC	1 cut(s)	903
SapI	GCTCTTC	1 cut(s)	885
SatI	GCNGC	4 cut(s)	5, 51, 116, 924
Sau96I	GGNCC	5 cut(s)	345, 436, 581, 582, 779
SchI	GAGTC	3 cut(s)	305, 395, 465
ScrFI	CCNGG	7 cut(s)	152, 179, 343, 406, 440, 603, 784
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	2 cut(s)	138, 925
SfcI	CTRYAG	1 cut(s)	564
Sfr274I	CTCGAG	2 cut(s)	260, 473
SinI	GGWCC	2 cut(s)	436, 779
SlaI	CTCGAG	2 cut(s)	260, 473
SmlI	CTYRAG	4 cut(s)	260, 305, 473, 884
SmoI	CTYRAG	4 cut(s)	260, 305, 473, 884
SsiI	CCGC	8 cut(s)	5, 50, 72, 116, 127, 361, 443, 926
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	7 cut(s)	150, 177, 341, 404, 438, 601, 782
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	3 cut(s)	13, 211, 372
TaiI	ACGT	2 cut(s)	298, 416
TaqI	TCGA	7 cut(s)	156, 241, 247, 261, 474, 807, 912
TauI	GCSGC	3 cut(s)	7, 53, 118
TfiI	GAWTC	3 cut(s)	189, 520, 589
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	1 cut(s)	923
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	709
VpaK11BI	GGWCC	2 cut(s)	436, 779
XagI	CCTNNNNNAGG	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	661
XhoI	CTCGAG	2 cut(s)	260, 473
XmiI	GTMKAC	1 cut(s)	607
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.