Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0012721

Physical Location & Seq

Genomic Coordinates Reverse (-)

20100415 .. 20103326

Gene Structure 2912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1125600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGAAACAGTACCCGACTGTGAGTGAGGAATACCAGAAGGCGGTAGAAAAATGCAAGAGAAAACTCCGAGGGCTCATCGCCGAGAAGCACTGTGCTCCGATAGTCCTCCGGTTGGCATGGCACTCAGCTGGTACGTTTGACATACACACGAAGACTGGAGGACCGTTTGGGACCATCAGGCACCCGGAGGAGCTCGCTCATGAAGCAAACAACGGTCTTGATATCGTGGTTAGGCTTTTGGAGCCGATCAAGGAGCAGTTTCCGATCCTCTCGTATGCAGACTTCTACCAGCTGGCTGGAGTTGTTGCTGTAGAAGTTACAGGAGGGCCTGAGATTCCTTTCCACCCTGGTAGACCAGATAAACAAGAACCACCACCAGAAGGTCGTTTGCCAGATGCCACCAAAGGTTCGGATCATCTGAGGGATGTCTTTGGACACATGGGACTTAGTGACAAGGACATTGTTGCATTATCCGGTGGACACACCTTGGGTAGGTGTCACAAGGAGCGTTCTGGATTCGAGGGACCCTGGACAACCAACCCTCTTATTTTCGACAACTCCTATTTCAAGGAGCTTCTTAATGGAGAGAAAGAAGGTCTTCTTCAGCTGCCATCAGATAAAGCTCTTCTGGAGGATCCAGTCTTTCGCCCTCTTGTCGAGACTTATGCTGCGGACGAAGACGCCTTCTTTGCTGATTATGCTGAAGCACATTTGAAGCTCTCCGAGCTTGGATTTGCAGATGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

251

Amino Acids

27.73

Weight (kDa)

5.31

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	26 - 226	5.4e-46	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09640 AT3G09640
fragaria_vesca	FvH4_6g15200 FvH4_6g15200
malus_domestica	MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica	Prupe.6G242200_v2.0.a1
pyrus_communis	pycom04g10030 pycom12g12390
rosa_chinensis	RchiOBHm_Chr3g0468551
rosa_laevigata	RLG00000024423
rosa_multiflora	Rmu_sc0009516.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412700
rosa_rugosa	Rorug03G0095800 Rorug03G0095900
rosa_samantha	Rh3BG166500 Rh3DG165900
rosa_wichuraiana	Rw3G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	2 cut(s)	44, 674
AclWI	GGATC	4 cut(s)	262, 423, 632, 645
AcuI	CTGAAG	2 cut(s)	590, 726
AcyI	GRCGYC	1 cut(s)	684
AfaI	GTAC	2 cut(s)	14, 136
AfiI	CCNNNNNNNGG	4 cut(s)	43, 115, 383, 495
AgsI	TTSAA	2 cut(s)	571, 718
AjnI	CCWGG	2 cut(s)	349, 530
AluBI	AGCT	8 cut(s)	131, 196, 295, 577, 610, 626, 721, 730
AluI	AGCT	8 cut(s)	131, 196, 295, 577, 610, 626, 721, 730
Alw21I	GWGCWC	2 cut(s)	100, 198
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	4 cut(s)	262, 423, 632, 645
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	610, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
Asp700I	GAANNNNTTC	1 cut(s)	600
AspS9I	GGNCC	4 cut(s)	164, 174, 329, 527
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	3 cut(s)	164, 174, 527
BamHI	GGATCC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	2 cut(s)	78, 198
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
BbsI	GAAGAC	3 cut(s)	161, 593, 687
Bbv12I	GWGCWC	2 cut(s)	100, 198
BbvI	GCAGC	2 cut(s)	597, 658
BccI	CCATC	2 cut(s)	185, 622
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	2 cut(s)	351, 532
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	656
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	611, 672
BlsI	GCNGC	2 cut(s)	612, 673
Bme1390I	CCNGG	3 cut(s)	188, 351, 532
Bme18I	GGWCC	3 cut(s)	164, 174, 527
BmgT120I	GGNCC	4 cut(s)	164, 174, 329, 527
BmiI	GGNNCC	6 cut(s)	175, 185, 246, 528, 529, 639
BmrFI	CCNGG	3 cut(s)	188, 351, 532
BmsI	GCATC	2 cut(s)	388, 733
BpiI	GAAGAC	3 cut(s)	161, 593, 687
BpmI	CTGGAG	3 cut(s)	180, 321, 653
BpuMI	CCSGG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	684
BsaJI	CCNNGG	4 cut(s)	70, 349, 489, 530
BsaWI	WCCGGW	2 cut(s)	111, 476
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 115, 383, 495
Bse1I	ACTGG	2 cut(s)	163, 641
BseBI	CCWGG	2 cut(s)	351, 532
BseDI	CCNNGG	4 cut(s)	70, 349, 489, 530
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	4 cut(s)	43, 115, 383, 495
BseMII	CTCAG	4 cut(s)	141, 324, 413, 738
BseNI	ACTGG	2 cut(s)	163, 641
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	597, 658
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	2 cut(s)	100, 198
BsiSI	CCGG	3 cut(s)	112, 188, 477
BslFI	GGGAC	3 cut(s)	187, 459, 540
BslI	CCNNNNNNNGG	4 cut(s)	43, 115, 383, 495
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	3 cut(s)	187, 459, 540
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	3 cut(s)	78, 100, 198
Bsp143I	GATC	4 cut(s)	249, 267, 415, 637
BspACI	CCGC	2 cut(s)	44, 674
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	4 cut(s)	140, 325, 414, 739
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	6 cut(s)	175, 185, 246, 528, 529, 639
BspPI	GGATC	4 cut(s)	262, 423, 632, 645
BspQI	GCTCTTC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	163, 641
BssECI	CCNNGG	4 cut(s)	70, 349, 489, 530
BssMI	GATC	4 cut(s)	249, 267, 415, 637
BssNI	GRCGYC	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	351, 532
Bst4CI	ACNGT	5 cut(s)	12, 22, 95, 168, 218
Bst6I	CTCTTC	1 cut(s)	633
BstACI	GRCGYC	1 cut(s)	684
BstC8I	GCNNGC	2 cut(s)	198, 297
BstDEI	CTNAG	5 cut(s)	127, 333, 422, 449, 747
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	4 cut(s)	252, 270, 418, 640
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	249, 267, 415, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 244, 692, 701, 727
BstNI	CCWGG	2 cut(s)	351, 532
BstSCI	CCNGG	3 cut(s)	186, 349, 530
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	597, 658
BstV2I	GAAGAC	3 cut(s)	161, 593, 687
BstX2I	RGATCY	1 cut(s)	637
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	198, 297
CaiI	CAGNNNCTG	1 cut(s)	746
CciI	TCATGA	1 cut(s)	202
Cfr13I	GGNCC	4 cut(s)	164, 174, 329, 527
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	13, 135
CviAII	CATG	3 cut(s)	120, 203, 442
CviQI	GTAC	2 cut(s)	13, 135
DdeI	CTNAG	5 cut(s)	127, 333, 422, 449, 747
DpnI	GATC	4 cut(s)	251, 269, 417, 639
DpnII	GATC	4 cut(s)	249, 267, 415, 637
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	2 cut(s)	78, 198
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	3 cut(s)	164, 174, 527
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	590, 726
EcoICRI	GAGCTC	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoO109I	RGGNCCY	2 cut(s)	329, 527
EcoRII	CCWGG	2 cut(s)	349, 530
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	2 cut(s)	78, 198
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	123, 206, 445
FaiI	YATR	7 cut(s)	121, 146, 204, 279, 443, 669, 702
FalI	AAGNNNNNCTT	4 cut(s)	585, 617, 588, 620
FaqI	GGGAC	3 cut(s)	187, 459, 540
FatI	CATG	3 cut(s)	119, 202, 441
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	611, 672
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	2 cut(s)	78, 198
Fsp4HI	GCNGC	2 cut(s)	611, 672
GluI	GCNGC	2 cut(s)	611, 672
GsuI	CTGGAG	3 cut(s)	180, 321, 653
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	3 cut(s)	112, 188, 477
HgaI	GACGC	1 cut(s)	692
Hin1I	GRCGYC	1 cut(s)	684
Hin1II	CATG	3 cut(s)	123, 206, 445
HinfI	GANTC	2 cut(s)	337, 519
HpaII	CCGG	3 cut(s)	112, 188, 477
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	356, 482
Hpy188I	TCNGA	7 cut(s)	71, 102, 267, 415, 423, 619, 727
Hpy188III	TCNNGA	5 cut(s)	203, 221, 516, 632, 661
Hpy8I	GTNNAC	2 cut(s)	356, 482
HpyAV	CCTTC	4 cut(s)	34, 377, 590, 697
HpyCH4III	ACNGT	5 cut(s)	12, 22, 95, 168, 218
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	4 cut(s)	57, 281, 470, 740
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 244, 692, 701, 727
HpyF3I	CTNAG	5 cut(s)	127, 333, 422, 449, 747
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	684
Hsp92II	CATG	3 cut(s)	123, 206, 445
KflI	GGGWCCC	1 cut(s)	527
Kzo9I	GATC	4 cut(s)	249, 267, 415, 637
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	6 cut(s)	103, 193, 244, 256, 508, 574
Lsp1109I	GCAGC	2 cut(s)	597, 658
LweI	GCATC	2 cut(s)	388, 733
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	3 cut(s)	319, 452, 500
MalI	GATC	4 cut(s)	251, 269, 417, 639
MboI	GATC	4 cut(s)	249, 267, 415, 637
MboII	GAAGA	5 cut(s)	166, 593, 596, 620, 692
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	3 cut(s)	78, 100, 198
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	3 cut(s)	131, 295, 610
MspI	CCGG	3 cut(s)	112, 188, 477
MspR9I	CCNGG	3 cut(s)	188, 351, 532
MvaI	CCWGG	2 cut(s)	351, 532
MwoI	GCNNNNNNNGC	5 cut(s)	206, 244, 692, 701, 727
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	4 cut(s)	249, 267, 415, 637
NlaIII	CATG	3 cut(s)	123, 206, 445
NlaIV	GGNNCC	6 cut(s)	175, 185, 246, 528, 529, 639
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	452, 500
PagI	TCATGA	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	337, 519
PkrI	GCNGC	2 cut(s)	612, 673
PpuMI	RGGWCCY	1 cut(s)	527
Psp124BI	GAGCTC	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	2 cut(s)	349, 530
PspGI	CCWGG	2 cut(s)	349, 530
PspN4I	GGNNCC	6 cut(s)	175, 185, 246, 528, 529, 639
PspPI	GGNCC	4 cut(s)	164, 174, 329, 527
PspPPI	RGGWCCY	1 cut(s)	527
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	3 cut(s)	131, 295, 610
RsaI	GTAC	2 cut(s)	14, 136
RsaNI	GTAC	2 cut(s)	13, 135
SacI	GAGCTC	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	2 cut(s)	611, 672
Sau3AI	GATC	4 cut(s)	249, 267, 415, 637
Sau96I	GGNCC	4 cut(s)	164, 174, 329, 527
ScrFI	CCNGG	3 cut(s)	188, 351, 532
SduI	GDGCHC	3 cut(s)	78, 100, 198
SfaNI	GCATC	2 cut(s)	388, 733
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	3 cut(s)	164, 174, 527
SsiI	CCGC	2 cut(s)	44, 674
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	3 cut(s)	186, 349, 530
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	5 cut(s)	12, 22, 95, 168, 218
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	522, 555, 660
TfiI	GAWTC	2 cut(s)	337, 519
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	2 cut(s)	452, 500
TseI	GCWGC	2 cut(s)	610, 671
Tsp45I	GTSAC	2 cut(s)	452, 500
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	3 cut(s)	164, 174, 527
XagI	CCTNNNNNAGG	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.