Rorug03G0095800

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012721
Physical Location & Seq
Reverse (-)
7483741 .. 7487410
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0095800.1

Sequence Viewer

Length: 1524 bp
ATGGAGGCGGAGGACAAGAAGAAGAAGAAGAGGAACAAGAATAAGAAGAAGAACAACAAGGCCACCGACGATGTCCCCGTCGCGGAGAACAGCAGCCAAGTTTCATCGTCCGCCGCCGCCGCCGCCGCCGATACTATTTCAGAAGATGTCCAGATTTCCGGCAACGGTCAAGTTTCAGAGGCCGCTGATAATGCTGTGCAATGTGTAGATGCGAATCCGATTAGGCATGAGAATGGCACCGAACAACGTTCGTTATTAGCTGAATCTGAGGAAAGGCATTGGCTTCAAAAAGAGGCTAAGTTGGAAGAAATGGTCAAGCAATTAGAAGAAGAAAAAGACTTGCAAATGCACAAGGAGGCTACATTAGAGGGTACTATTAAGCAATTACATAATGAAAAGGATTCACTTATACAGAAAGAGGCTACGTTAGAAGGTACGATAAAACTATTACGGGATGAAAAAGATGCACATATGCAGAAAGAGGCTACGTTAGAAGATACAATAAAACTATTACGGGAGGAAACTGATTCACACATTCATAAAGAGGCCATCCTACAGAAGGAAATTGTACAATTACGGAGTGAAACAAATTCCTGGCTTCAAAAGGAGGTTGGGTTGGAGGAGAACATCAGTCGACTAGTAGCCGAAAAGTCCACTTTGGAATCTGAAGAGGCAAGCTTACAGGAAAAGATTAAACATTTACAGAGTGATAGAGATACCTGGATTCTAAAGGAGGATTCATTTAAAGAAATGATAGCAACTCAGACAGATAATATCGCTAGACTACGAGCACAGGTGTTGGAATTGGAGCAATCCAGGAATAATCTTGTACAAGAAAACCAACAGCTGATGGGAAATTTATCTAGTCTAGAGTTGCAAATTAAGGATCTTGAGAGTGTTTCTTCTAATCGCTCATCAGTTGAAGGTGCAAAGCATACTTCAGAACGTGAAGATCTGAACTCGCAAATTGAAGCAGCATGTGCACTGGTTGAGAAATTAATTACAGAGAATGCAGACCTTGTTGAAAAGGTGAACGAGTTGTATGTTGAACTTGAACGGCATAGTGTAAAAGATGAGCTTCCTTCAACTACAACATTTAATACAACAGTTGTACCAGTTGAAACTCTTGGTACCATCAATCCCATGTCCAGATCTGGTGAGGATATGTCTACATCTGGCCAGAAGCTTTATTCATCAGAAGTTGTGCCGCTCAAAGAGGAGATACATTATAATGGTAACATGGATTCCCAGCAGGCTGCTTCACTGCAAGGTAATGGTAATTTGGATATTCAGCATCCTGAATCAGTTCCAAATTCACCCATATCGTATGAATCCAGTGAAAGTGAAATTGTGCAAATTCCTTTGGACACTGATGAAGTTCAGGATCTAGAGTTGCAGTCAGCCAGAGAGGTTAAAAACGAAGCTGTCTCTCTTACAGATGCTCCCCTAATTGGTGCACCTTTCCGGTTAGTGTCGTTTGTTGCTAGATATGTCAGCGGTGCAGACTTGGTTAACAAAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

507

Amino Acids

56.65

Weight (kDa)

4.75

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012721)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09640 AT3G09640
fragaria_vesca FvH4_6g15200 FvH4_6g15200
malus_domestica MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica Prupe.6G242200_v2.0.a1
pyrus_communis pycom04g10030 pycom12g12390
rosa_chinensis RchiOBHm_Chr3g0468551
rosa_laevigata RLG00000024423
rosa_multiflora Rmu_sc0009516.1_g000008
rosa_roxburghii Rroxscaffold_6G00412700
rosa_rugosa Rorug03G0095800 Rorug03G0095900
rosa_samantha Rh3BG166500 Rh3DG165900
rosa_wichuraiana Rw3G013620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1230
Acc65I GGTACC 1 cut(s) 1130
AccB1I GGYRCC 2 cut(s) 236, 1130
AccBSI CCGCTC 1 cut(s) 1210
AccI GTMKAC 2 cut(s) 634, 1169
AccII CGCG 1 cut(s) 83
AclI AACGTT 1 cut(s) 247
AclWI GGATC 2 cut(s) 894, 1392
AcoI YGGCCR 1 cut(s) 1177
AcsI RAATTY 4 cut(s) 589, 856, 1312, 1356
AcuI CTGAAG 2 cut(s) 687, 924
AfaI GTAC 6 cut(s) 373, 436, 570, 831, 1113, 1132
AfiI CCNNNNNNNGG 3 cut(s) 82, 559, 1451
AgsI TTSAA 9 cut(s) 287, 602, 923, 971, 1025, 1049, 1055, 1086, 1121
AhlI ACTAGT 1 cut(s) 637
AjnI CCWGG 3 cut(s) 593, 719, 815
AluBI AGCT 6 cut(s) 260, 678, 847, 1078, 1186, 1424
AluI AGCT 6 cut(s) 260, 678, 847, 1078, 1186, 1424
Alw21I GWGCWC 3 cut(s) 793, 985, 1459
Alw26I GTCTC 1 cut(s) 1432
Alw44I GTGCAC 2 cut(s) 981, 1455
AlwI GGATC 2 cut(s) 894, 1392
AoxI GGCC 4 cut(s) 60, 180, 546, 1177
ApaLI GTGCAC 2 cut(s) 981, 1455
ApeKI GCWGC 3 cut(s) 93, 974, 1256
ApoI RAATTY 4 cut(s) 589, 856, 1312, 1356
AseI ATTAAT 1 cut(s) 998
Asp700I GAANNNNTTC 1 cut(s) 1305
Asp718I GGTACC 1 cut(s) 1130
AsuHPI GGTGA 3 cut(s) 1042, 1169, 1308
BaeGI GKGCMC 2 cut(s) 985, 1459
BaeI ACNNNNGTAYC 2 cut(s) 1095, 1128
BalI TGGCCA 1 cut(s) 1179
BanI GGYRCC 2 cut(s) 236, 1130
Bbv12I GWGCWC 3 cut(s) 793, 985, 1459
BbvI GCAGC 3 cut(s) 105, 986, 1243
BccI CCATC 3 cut(s) 557, 844, 1142
BceAI ACGGC 1 cut(s) 1073
BciT130I CCWGG 3 cut(s) 595, 721, 817
BcoDI GTCTC 1 cut(s) 1432
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 6 cut(s) 638, 780, 864, 869, 1388, 1485
BfmI CTRYAG 1 cut(s) 554
BglII AGATCT 2 cut(s) 952, 1151
Bme1390I CCNGG 3 cut(s) 595, 721, 817
BmiI GGNNCC 2 cut(s) 238, 1132
BmrFI CCNGG 3 cut(s) 595, 721, 817
BmsI GCATC 4 cut(s) 199, 454, 1303, 1429
BpuEI CTTGAG 1 cut(s) 911
BsaBI GATNNNNATC 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 1464
BsaXI ACNNNNNCTCC 4 cut(s) 599, 629, 1426, 1456
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 559, 1451
Bse1I ACTGG 3 cut(s) 990, 1115, 1335
Bse3DI GCAATG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 3 cut(s) 595, 721, 817
BseGI GGATG 3 cut(s) 460, 549, 1294
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 3 cut(s) 82, 559, 1451
BseMI GCAATG 1 cut(s) 206
BseMII CTCAG 2 cut(s) 258, 776
BseNI ACTGG 3 cut(s) 990, 1115, 1335
BseRI GAGGAG 2 cut(s) 635, 1232
BseSI GKGCMC 2 cut(s) 985, 1459
BseXI GCAGC 3 cut(s) 105, 986, 1243
BseYI CCCAGC 1 cut(s) 1248
BsgI GTGCAG 1 cut(s) 1521
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 4 cut(s) 62, 182, 548, 1179
BshNI GGYRCC 2 cut(s) 236, 1130
BsiHKAI GWGCWC 3 cut(s) 793, 985, 1459
BsiSI CCGG 2 cut(s) 159, 1465
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 3 cut(s) 82, 559, 1451
BsmAI GTCTC 1 cut(s) 1432
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 4 cut(s) 62, 182, 548, 1179
Bsp1286I GDGCHC 3 cut(s) 793, 985, 1459
Bsp1407I TGTACA 2 cut(s) 568, 829
Bsp143I GATC 4 cut(s) 886, 952, 1151, 1384
BspANI GGCC 4 cut(s) 62, 182, 548, 1179
BspCNI CTCAG 2 cut(s) 259, 775
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 238, 1132
BspPI GGATC 2 cut(s) 894, 1392
BspT107I GGYRCC 2 cut(s) 236, 1130
BsrBI CCGCTC 1 cut(s) 1210
BsrDI GCAATG 1 cut(s) 206
BsrGI TGTACA 2 cut(s) 568, 829
BsrI ACTGG 3 cut(s) 990, 1115, 1335
BssMI GATC 4 cut(s) 886, 952, 1151, 1384
Bst2UI CCWGG 3 cut(s) 595, 721, 817
Bst4CI ACNGT 2 cut(s) 167, 1108
Bst6I CTCTTC 2 cut(s) 23, 663
BstAPI GCANNNNNTGC 1 cut(s) 980
BstAUI TGTACA 2 cut(s) 568, 829
BstC8I GCNNGC 2 cut(s) 676, 1254
BstDEI CTNAG 3 cut(s) 267, 297, 762
BstENI CCTNNNNNAGG 1 cut(s) 557
BstF5I GGATG 3 cut(s) 460, 549, 1294
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 4 cut(s) 889, 955, 1154, 1387
BstMAI GTCTC 1 cut(s) 1432
BstMBI GATC 4 cut(s) 886, 952, 1151, 1384
BstMWI GCNNNNNNNGC 5 cut(s) 119, 122, 125, 191, 980
BstNI CCWGG 3 cut(s) 595, 721, 817
BstNSI RCATGY 1 cut(s) 981
BstSCI CCNGG 3 cut(s) 593, 719, 815
BstSFI CTRYAG 1 cut(s) 554
BstSLI GKGCMC 2 cut(s) 985, 1459
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 3 cut(s) 105, 986, 1243
BstX2I RGATCY 4 cut(s) 886, 952, 1151, 1384
BstYI RGATCY 4 cut(s) 886, 952, 1151, 1384
BsuRI GGCC 4 cut(s) 62, 182, 548, 1179
BtsCI GGATG 3 cut(s) 460, 549, 1294
BtsI GCAGTG 1 cut(s) 1262
BtsIMutI CAGTG 4 cut(s) 983, 1262, 1342, 1368
Cac8I GCNNGC 2 cut(s) 676, 1254
Csp6I GTAC 6 cut(s) 372, 435, 569, 830, 1112, 1131
CviAII CATG 4 cut(s) 227, 978, 1144, 1240
CviQI GTAC 6 cut(s) 372, 435, 569, 830, 1112, 1131
DdeI CTNAG 3 cut(s) 267, 297, 762
DpnI GATC 4 cut(s) 888, 954, 1153, 1386
DpnII GATC 4 cut(s) 886, 952, 1151, 1384
DraI TTTAAA 1 cut(s) 745
EaeI YGGCCR 1 cut(s) 1177
Eam1104I CTCTTC 2 cut(s) 23, 663
EarI CTCTTC 2 cut(s) 23, 663
EciI GGCGGA 2 cut(s) 23, 100
Eco57I CTGAAG 2 cut(s) 687, 924
EcoNI CCTNNNNNAGG 1 cut(s) 557
EcoRII CCWGG 3 cut(s) 593, 719, 815
FaeI CATG 4 cut(s) 230, 981, 1147, 1243
FalI AAGNNNNNCTT 2 cut(s) 1062, 1094
FaqI GGGAC 1 cut(s) 59
FatI CATG 4 cut(s) 226, 977, 1143, 1239
FauNDI CATATG 1 cut(s) 471
FblI GTMKAC 2 cut(s) 634, 1169
FokI GGATG 3 cut(s) 467, 536, 1281
FspBI CTAG 6 cut(s) 638, 780, 864, 869, 1388, 1485
GsaI CCCAGC 1 cut(s) 1252
HaeIII GGCC 4 cut(s) 62, 182, 548, 1179
HapII CCGG 2 cut(s) 159, 1465
Hin1II CATG 4 cut(s) 230, 981, 1147, 1243
HincII GTYRAC 2 cut(s) 635, 1513
HindII GTYRAC 2 cut(s) 635, 1513
HindIII AAGCTT 2 cut(s) 676, 1184
HpaI GTTAAC 1 cut(s) 1513
HpaII CCGG 2 cut(s) 159, 1465
HphI GGTGA 3 cut(s) 1042, 1169, 1308
Hpy166II GTNNAC 7 cut(s) 635, 654, 983, 1033, 1170, 1457, 1513
Hpy188I TCNGA 9 cut(s) 142, 178, 219, 268, 667, 765, 943, 957, 1198
Hpy188III TCNNGA 7 cut(s) 151, 869, 890, 1149, 1298, 1382, 1388
Hpy8I GTNNAC 7 cut(s) 635, 654, 983, 1033, 1170, 1457, 1513
Hpy99I CGWCG 2 cut(s) 71, 83
HpyAV CCTTC 4 cut(s) 425, 553, 917, 1092
HpyCH4III ACNGT 2 cut(s) 167, 1108
HpyCH4IV ACGT 4 cut(s) 247, 425, 488, 946
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 122, 125, 191, 980
HpyF3I CTNAG 3 cut(s) 267, 297, 762
HpySE526I ACGT 4 cut(s) 247, 425, 488, 946
Hsp92II CATG 4 cut(s) 230, 981, 1147, 1243
KpnI GGTACC 1 cut(s) 1134
KspAI GTTAAC 1 cut(s) 1513
Kzo9I GATC 4 cut(s) 886, 952, 1151, 1384
LmnI GCTCC 2 cut(s) 808, 1447
Lsp1109I GCAGC 3 cut(s) 105, 986, 1243
LweI GCATC 4 cut(s) 199, 454, 1303, 1429
MaeI CTAG 6 cut(s) 638, 780, 864, 869, 1388, 1485
MaeII ACGT 4 cut(s) 247, 425, 488, 946
MaeIII GTNAC 1 cut(s) 1235
MalI GATC 4 cut(s) 888, 954, 1153, 1386
MbiI CCGCTC 1 cut(s) 1210
MboI GATC 4 cut(s) 886, 952, 1151, 1384
MflI RGATCY 4 cut(s) 886, 952, 1151, 1384
MhlI GDGCHC 3 cut(s) 793, 985, 1459
MlsI TGGCCA 1 cut(s) 1179
MluNI TGGCCA 1 cut(s) 1179
MmeI TCCRAC 3 cut(s) 282, 597, 780
Mox20I TGGCCA 1 cut(s) 1179
MroXI GAANNNNTTC 1 cut(s) 1305
MscI TGGCCA 1 cut(s) 1179
MseI TTAA 8 cut(s) 378, 693, 744, 882, 998, 1098, 1413, 1512
MslI CAYNNNNRTG 2 cut(s) 231, 1230
Msp20I TGGCCA 1 cut(s) 1179
MspA1I CMGCKG 3 cut(s) 185, 847, 1497
MspI CCGG 2 cut(s) 159, 1465
MspR9I CCNGG 3 cut(s) 595, 721, 817
Mva1269I GAATGC 1 cut(s) 1015
MvaI CCWGG 3 cut(s) 595, 721, 817
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 5 cut(s) 119, 122, 125, 191, 980
NdeI CATATG 1 cut(s) 471
NdeII GATC 4 cut(s) 886, 952, 1151, 1384
NlaIII CATG 4 cut(s) 230, 981, 1147, 1243
NlaIV GGNNCC 2 cut(s) 238, 1132
NspI RCATGY 1 cut(s) 981
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 1015
PdmI GAANNNNTTC 1 cut(s) 1305
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 815
PshBI ATTAAT 1 cut(s) 998
PsiI TTATAA 1 cut(s) 1230
Psp1406I AACGTT 1 cut(s) 247
Psp6I CCWGG 3 cut(s) 593, 719, 815
PspFI CCCAGC 1 cut(s) 1248
PspGI CCWGG 3 cut(s) 593, 719, 815
PspN4I GGNNCC 2 cut(s) 238, 1132
PsuI RGATCY 4 cut(s) 886, 952, 1151, 1384
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 6 cut(s) 373, 436, 570, 831, 1113, 1132
RsaNI GTAC 6 cut(s) 372, 435, 569, 830, 1112, 1131
RseI CAYNNNNRTG 2 cut(s) 231, 1230
SalI GTCGAC 1 cut(s) 633
SaqAI TTAA 8 cut(s) 378, 693, 744, 882, 998, 1098, 1413, 1512
Sau3AI GATC 4 cut(s) 886, 952, 1151, 1384
ScrFI CCNGG 3 cut(s) 595, 721, 817
SduI GDGCHC 3 cut(s) 793, 985, 1459
SfaNI GCATC 4 cut(s) 199, 454, 1303, 1429
SfcI CTRYAG 1 cut(s) 554
SmiMI CAYNNNNRTG 2 cut(s) 231, 1230
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SpeI ACTAGT 1 cut(s) 637
SspMI CTAG 6 cut(s) 638, 780, 864, 869, 1388, 1485
StyD4I CCNGG 3 cut(s) 593, 719, 815
TaaI ACNGT 2 cut(s) 167, 1108
TaiI ACGT 4 cut(s) 250, 428, 491, 949
TaqI TCGA 1 cut(s) 634
TatI WGTACW 2 cut(s) 568, 829
TauI GCSGC 7 cut(s) 116, 119, 122, 125, 128, 185, 1210
Tru1I TTAA 8 cut(s) 378, 693, 744, 882, 998, 1098, 1413, 1512
Tru9I TTAA 8 cut(s) 378, 693, 744, 882, 998, 1098, 1413, 1512
TscAI CASTG 4 cut(s) 990, 1269, 1342, 1375
TseI GCWGC 3 cut(s) 93, 974, 1256
TspDTI ATGAA 8 cut(s) 93, 408, 471, 527, 729, 1182, 1344, 1389
TspGWI ACGGA 1 cut(s) 592
TspRI CASTG 4 cut(s) 990, 1269, 1342, 1375
Tth111I GACNNNGTC 1 cut(s) 71
VneI GTGCAC 2 cut(s) 981, 1455
VspI ATTAAT 1 cut(s) 998
XagI CCTNNNNNAGG 1 cut(s) 557
XapI RAATTY 4 cut(s) 589, 856, 1312, 1356
XbaI TCTAGA 2 cut(s) 868, 1387
XceI RCATGY 1 cut(s) 981
XmiI GTMKAC 2 cut(s) 634, 1169
XmnI GAANNNNTTC 1 cut(s) 1305
XspI CTAG 6 cut(s) 638, 780, 864, 869, 1388, 1485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.