Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012721

Physical Location & Seq

Genomic Coordinates Forward (+)

14335636 .. 14338686

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG166500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCTCAGGTGGCACTCGGCTGGGACGTTCGATGTGGCAACGAAGACCGGAGGGCCGTTCGGGACGATCAGGGACCCTGCGGTGCTGGCTCATGAAGCAAACAAGGGACTCGAGATTGCAGTCAGGATTTTGGAGCCGATCAAGGAGCAGTTTCCGATTCTCTCATATGCAGACTTCTACCAGGACAAAGAAGAAGCACCACCGGAAGGTCGCTTGCCTAATGCCAACAAAGGTGTGGATCATTTGAGGGATGTGTTTGGCCATATGGGTCTCAGTGACAAGGACATTGTTGCATTATCTGGTGGACACACCTTGGGTAGGTGCCACAAGGAGCGCTCTGGATTTGAGGGACCCTGGACAACCAATCCCCTCATTTTCGACAACTCCTATTTCAAGGAACTTATTAGTGGAGAGAAGGAAGGTCTGATCCAGCTTCCATCAGATAAGGCTCTTCTTGAGGATCCAGTTTTTCGTACTTTTGTTGAGACCTATGCTGCGGATGAGGATGCTTTCTTTGCTGACTATGCTGAAGCTCATTTGAAGCTTTCAGAGCTTGGATTTGCAGATACCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

191

Amino Acids

21.18

Weight (kDa)

4.86

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	68 - 167	3.3e-20	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09640 AT3G09640
fragaria_vesca	FvH4_6g15200 FvH4_6g15200
malus_domestica	MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica	Prupe.6G242200_v2.0.a1
pyrus_communis	pycom04g10030 pycom12g12390
rosa_chinensis	RchiOBHm_Chr3g0468551
rosa_laevigata	RLG00000024423
rosa_multiflora	Rmu_sc0009516.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412700
rosa_rugosa	Rorug03G0095800 Rorug03G0095900
rosa_samantha	Rh3BG166500 Rh3DG165900
rosa_wichuraiana	Rw3G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AciI	CCGC	2 cut(s)	80, 497
AclWI	GGATC	4 cut(s)	246, 421, 455, 468
AcoI	YGGCCR	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	475
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	206, 318
AgsI	TTSAA	2 cut(s)	394, 541
AjnI	CCWGG	2 cut(s)	180, 353
AluBI	AGCT	4 cut(s)	433, 533, 544, 553
AluI	AGCT	4 cut(s)	433, 533, 544, 553
Alw26I	GTCTC	2 cut(s)	275, 479
AlwI	GGATC	4 cut(s)	246, 421, 455, 468
Ama87I	CYCGRG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	2 cut(s)	53, 259
ApeKI	GCWGC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	3 cut(s)	53, 73, 350
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	73, 350
BalI	TGGCCA	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	2 cut(s)	182, 355
BcoDI	GTCTC	2 cut(s)	275, 479
BfoI	RGCGCY	1 cut(s)	337
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	182, 355
Bme18I	GGWCC	2 cut(s)	73, 350
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	53, 73, 350
BmiI	GGNNCC	7 cut(s)	74, 75, 135, 323, 351, 352, 462
BmrFI	CCNGG	2 cut(s)	182, 355
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	476
BsaI	GGTCTC	2 cut(s)	275, 479
BsaJI	CCNNGG	2 cut(s)	312, 353
BsaWI	WCCGGW	2 cut(s)	47, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 318
Bse1I	ACTGG	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	182, 355
BseDI	CCNNGG	2 cut(s)	312, 353
BseGI	GGATG	3 cut(s)	256, 505, 511
BseLI	CCNNNNNNNGG	2 cut(s)	206, 318
BseMII	CTCAG	2 cut(s)	19, 286
BseNI	ACTGG	1 cut(s)	464
BseXI	GCAGC	1 cut(s)	481
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	2 cut(s)	55, 261
BshNI	GGYRCC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	48, 203
BslFI	GGGAC	5 cut(s)	37, 76, 86, 120, 363
BslI	CCNNNNNNNGG	2 cut(s)	206, 318
BsmAI	GTCTC	2 cut(s)	275, 479
BsmFI	GGGAC	5 cut(s)	37, 76, 86, 120, 363
BsnI	GGCC	2 cut(s)	55, 261
Bso31I	GGTCTC	2 cut(s)	275, 479
BsoBI	CYCGRG	1 cut(s)	110
Bsp143I	GATC	5 cut(s)	66, 138, 238, 426, 460
BspACI	CCGC	2 cut(s)	80, 497
BspANI	GGCC	2 cut(s)	55, 261
BspCNI	CTCAG	2 cut(s)	18, 285
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	7 cut(s)	74, 75, 135, 323, 351, 352, 462
BspPI	GGATC	4 cut(s)	246, 421, 455, 468
BspQI	GCTCTTC	1 cut(s)	456
BspT107I	GGYRCC	1 cut(s)	321
BspTNI	GGTCTC	2 cut(s)	275, 479
BsrI	ACTGG	1 cut(s)	464
BssECI	CCNNGG	2 cut(s)	312, 353
BssMI	GATC	5 cut(s)	66, 138, 238, 426, 460
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	182, 355
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	87, 215
BstDEI	CTNAG	2 cut(s)	5, 272
BstENI	CCTNNNNNAGG	1 cut(s)	316
BstF5I	GGATG	3 cut(s)	256, 505, 511
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	5 cut(s)	69, 141, 241, 429, 463
BstMAI	GTCTC	2 cut(s)	275, 479
BstMBI	GATC	5 cut(s)	66, 138, 238, 426, 460
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 86, 95, 515, 524, 550
BstNI	CCWGG	2 cut(s)	182, 355
BstSCI	CCNGG	2 cut(s)	180, 353
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	55, 261
BtsCI	GGATG	3 cut(s)	256, 505, 511
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	87, 215
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	53, 73, 350
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	92
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	2 cut(s)	5, 272
DpnI	GATC	5 cut(s)	68, 140, 240, 428, 462
DpnII	GATC	5 cut(s)	66, 138, 238, 426, 460
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	312
Eco31I	GGTCTC	2 cut(s)	275, 479
Eco47I	GGWCC	2 cut(s)	73, 350
Eco47III	AGCGCT	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	316
EcoO109I	RGGNCCY	2 cut(s)	73, 350
EcoRII	CCWGG	2 cut(s)	180, 353
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	95
FaiI	YATR	7 cut(s)	93, 166, 168, 264, 266, 492, 525
FaqI	GGGAC	5 cut(s)	37, 76, 86, 120, 363
FatI	CATG	1 cut(s)	91
FauNDI	CATATG	2 cut(s)	166, 264
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	3 cut(s)	263, 512, 518
Fsp4HI	GCNGC	1 cut(s)	495
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	1 cut(s)	495
GsaI	CCCAGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	2 cut(s)	55, 261
HapII	CCGG	2 cut(s)	48, 203
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	2 cut(s)	108, 157
HpaII	CCGG	2 cut(s)	48, 203
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	4 cut(s)	156, 426, 442, 550
Hpy188III	TCNNGA	6 cut(s)	61, 92, 112, 124, 339, 455
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	3 cut(s)	200, 409, 413
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	4 cut(s)	119, 170, 293, 563
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 86, 95, 515, 524, 550
HpyF3I	CTNAG	2 cut(s)	5, 272
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	334
KflI	GGGWCCC	2 cut(s)	73, 350
Kzo9I	GATC	5 cut(s)	66, 138, 238, 426, 460
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	3 cut(s)	133, 145, 331
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	1 cut(s)	496
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	5 cut(s)	68, 140, 240, 428, 462
MboI	GATC	5 cut(s)	66, 138, 238, 426, 460
MboII	GAAGA	3 cut(s)	55, 203, 443
MflI	RGATCY	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	261
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	6 cut(s)	44, 240, 340, 380, 451, 496
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	261
MspI	CCGG	2 cut(s)	48, 203
MspR9I	CCNGG	2 cut(s)	182, 355
MvaI	CCWGG	2 cut(s)	182, 355
MwoI	GCNNNNNNNGC	6 cut(s)	10, 86, 95, 515, 524, 550
NdeI	CATATG	2 cut(s)	166, 264
NdeII	GATC	5 cut(s)	66, 138, 238, 426, 460
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	7 cut(s)	74, 75, 135, 323, 351, 352, 462
NmuCI	GTSAC	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	110
PagI	TCATGA	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PpuMI	RGGWCCY	2 cut(s)	73, 350
Psp5II	RGGWCCY	2 cut(s)	73, 350
Psp6I	CCWGG	2 cut(s)	180, 353
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	180, 353
PspN4I	GGNNCC	7 cut(s)	74, 75, 135, 323, 351, 352, 462
PspPI	GGNCC	3 cut(s)	53, 73, 350
PspPPI	RGGWCCY	2 cut(s)	73, 350
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SapI	GCTCTTC	1 cut(s)	456
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	5 cut(s)	66, 138, 238, 426, 460
Sau96I	GGNCC	3 cut(s)	53, 73, 350
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	182, 355
SfaNI	GCATC	1 cut(s)	496
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	2 cut(s)	73, 350
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	110, 455
SmoI	CTYRAG	2 cut(s)	110, 455
SsiI	CCGC	2 cut(s)	80, 497
StyD4I	CCNGG	2 cut(s)	180, 353
StyI	CCWWGG	1 cut(s)	312
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	3 cut(s)	30, 111, 378
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	73, 350
XagI	CCTNNNNNAGG	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.