Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017189

Physical Location & Seq

Genomic Coordinates Forward (+)

2958676 .. 2961299

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

ATGAACATTCTCCGACCTCCGACGTCATCATCATCTTCGTCGTTTCCTCCATACCCAAAGCCCGTTTCATTAACCCCTCCGGTATCTTTCACTCTCATCCACAACCCCATAAACCTCTGCTCTATAAACCCACCATTCACCAACGCTGGTCGACCAATTTTCCAACGGTCCGCCTCCGGCACTGCTAATAGCTCCGCCGAAGACCTCTCGTCTTTCTTGGGCTCTCCCTCAGAGGCGTATTCAACACACAACGACCAAGAGCTTTTGTTTCTCCTCCGCAATAGAAAAACCGATGAAGCTTGGGCTAAGTATGTTCAATCCACTCATCTCCCTGGACCAACTTGTCTTAGCCGTTTAGTTTCTCAATTATCTTATCAATCCAAACCCGAGAGTCTCACGCGCGCACAATCTATCCTCACGCGCCTCCGCAATGAACGCCAGCTGCATCGCCTTGACGCTAATTCCCTCGGTCTCCTCGCCATGGCTGCAGCGAAGTCTGGCCAAACACTTTACGCCGTCTCCGTCATCAAGTCCATGATTCGTTCTGGGTATTTACCTCATGTTAAAGCGTGGACAGCTGCAGTAGCTAGTCTCTCTGCTTCCGGAGATGATGGTCCGGAAGAATCTATCAAACTCTTCATCGCTATTACGCGACGAGTCAAACGATTTGGTGACCAGTCTTTGGTTGGTCAATCTAGGCCTGATACGGCGGCATTTAATGCGGTGCTTAACGCTTGTGCTAACCTTGGTGATACTGACAAGTATTGGAAGTTGTTCGAGGAAATGTCTGAGTGGGATTGTGAGCCTGATGTCTTGACTTACAATGTTATGATTAAGCTTTGTGCGAGGGTTGGTCGGAAGGAATTGATTGTGTTTGTGTTGGAAAGGATTATTGACAAGGGGATTAAGGTTTGTATGACTACAATGCATTCTCTTGTTGCAGCTTATGTTGGGTTTGGAGATTTGAGAACTGCTGAGAGGATTGTTCAAGCGATGAGGGAGAAAAGGAGAGATCTTTGTAAGGTTCTACGAGAATGCAACGCTGAGGATTTGAAGGAGAAAGAAGAGGAAGAAGCAGAAGATGATGAAGATGCGTTTGAGGATGATGAAGACTCGGGTTATTCGGCTCGGGATGAGGTAAGTGAAGAGGGGGTTGTAGATGTGTTCAAGAAATTGCTACCTAACTCGGTTGATCCGAGTGGTGAGCCACCATTGTTGCCTAAAGTCTTTGCACCAGACTCAAGGATCTACACGACGTTGATGAAAGGTTATATGAAGAATGGGCGTGTGGCAGACACAGCTAGAATGCTTGAGGCAATGAGGCGTCAAGATGATAGAAACAGTCACCCAGATGAAGTTACATACACTACGGTTGTGTCAGCTTTTGTAAATGCAGGGTTGATGGATAGAGCAAGACAAGTGTTAGCCGAGATGGCTCGGATGGGTGTTCCTGCAAATAGGATTACTTATAATGTTCTGCTCAAAGGATATTGTAAGCAGTTGCAGATAGATAGGGCAGAGGATTTACTAAGAGAGATGACTGAAGATGCGGGGATCGAGCCAGACGTGGTTTCCTATAACATTATAATAGATGGATGCATTCTTATAGATGATAGCGCAGGAGCTCTAGCGTTTTTCAATGAAATGAGAACGAGAGGGATTGCACCAACTAAGATTAGTTACACAACTTTGATGAAGGCTTTTGCAATGTCGGGGCAACCCAAGTTGGCGAATAGGGTGTTTGATGAGATGATGAATGATCCAAGGGTCAAAGTTGATTTGATCGCGTGGAACATGTTGGTTGAAGGGTACTGCAGGCTAGGTTTGATTGAGGATGCTCAGAGAGTAGTGTCAAGAATGAAAGAAAACGGGTTTTACCCAAATGTGGCAACCTATGGGAGTCTAGCCAATGGGGTTTCGCAGGCGAGGAAACCTGGTGATGCTCTCTTGCTTTGGAAGGAGATAAAGGAAAGGTGTGCGGTGAAAAAGAAAGAAGCACCTTCAGATTCTTCTTCAGATCCTGCTCCTCCGATGCTGAAACCAGATGAAGGGTTGTTAGATACACTAGCGGATATATGTGTCAGGGCTGCTTTTTTCAAGAAGGCATTGGAGATAATCGCATGTATGGAGGAGAATGGGATACCTCCGAATAAGACTAAGTACAAGAAGATCTATGTGGAGATGCACTCGAGGATGTTCACTAGCAAACATGCTTCACAAGCCAGAATAGATAGGCGGGTAGAACGAAAGAGAGCGGCTGAAGCTTTCAAGTTTTGGCTCGGTTTGCCTAATTCTTATTATGGAAGTGAATGGAAGTTAGGTCCAAGAGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

778

Amino Acids

86.96

Weight (kDa)

6.58

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	233 - 281	1.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	234 - 283	4.1e-15	PPR repeat family
TPR_24	PF23276	428 - 548	1.4e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	446 - 498	9.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	447 - 478	2.9e-06	PPR repeat
PPR_2	PF13041	450 - 499	1.2e-13	PPR repeat family
PPR_1	PF12854	481 - 514	3.4e-08	PPR repeat
PPR_2	PF13041	486 - 533	3.8e-14	PPR repeat family
PPR	PF01535	488 - 515	3.9e-06	PPR repeat
PPR_3	PF13812	509 - 568	3.3e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	541 - 569	6.9e-06	PPR repeat family
TPR_24	PF23276	568 - 642	1e-05	Fungal tetratrico peptide repeats
PPR_3	PF13812	580 - 635	3.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	590 - 621	1.5e-06	PPR repeat
PPR_2	PF13041	593 - 639	6.5e-11	PPR repeat family
PPR	PF01535	596 - 625	2.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09650
fragaria_vesca	FvH4_6g15290
prunus_persica	Prupe.6G241600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468701
rosa_laevigata	RLG00000024415
rosa_multiflora	Rmu_sc0011538.1_g000002 Rmu_sc0028512.1_g000001 Rmu_sc0033138.1_g000003
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145300 Rh3BG168000 Rh3DG166600
rosa_wichuraiana	Rw3G013690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1470, 1586
AasI	GACNNNNNNGTC	1 cut(s)	342
AatII	GACGTC	1 cut(s)	26
AccB7I	CCANNNNNTGG	1 cut(s)	682
AccBSI	CCGCTC	1 cut(s)	2255
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	5 cut(s)	400, 402, 421, 652, 1787
AccIII	TCCGGA	2 cut(s)	602, 616
AclWI	GGATC	5 cut(s)	1187, 1253, 1562, 1754, 2012
AcoI	YGGCCR	1 cut(s)	499
AcuI	CTGAAG	4 cut(s)	1563, 1986, 1998, 2280
AcyI	GRCGYC	2 cut(s)	23, 1324
AfaI	GTAC	2 cut(s)	1811, 2162
AfiI	CCNNNNNNNGG	4 cut(s)	481, 682, 1885, 2048
AflIII	ACRYGT	1 cut(s)	1794
AgsI	TTSAA	9 cut(s)	243, 317, 989, 1054, 1168, 1639, 1805, 2098, 2269
AhdI	GACNNNNNGTC	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	1567
AjnI	CCWGG	2 cut(s)	331, 1933
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
Alw21I	GWGCWC	1 cut(s)	1627
Alw26I	GTCTC	4 cut(s)	398, 476, 523, 596
AlwI	GGATC	5 cut(s)	1187, 1253, 1562, 1754, 2012
AlwNI	CAGNNNCTG	1 cut(s)	2021
Ama87I	CYCGRG	4 cut(s)	386, 1114, 1128, 2188
Aor13HI	TCCGGA	2 cut(s)	602, 616
AoxI	GGCC	2 cut(s)	499, 698
ApeKI	GCWGC	6 cut(s)	442, 485, 488, 578, 941, 2087
Asp700I	GAANNNNTTC	1 cut(s)	773
AspLEI	GCGC	4 cut(s)	402, 404, 423, 1619
AspS9I	GGNCC	4 cut(s)	168, 335, 614, 2321
AsuHPI	GGTGA	7 cut(s)	130, 683, 761, 1214, 1337, 1949, 1993
AvaI	CYCGRG	4 cut(s)	386, 1114, 1128, 2188
AvaII	GGWCC	4 cut(s)	168, 335, 614, 2321
BalI	TGGCCA	1 cut(s)	501
BanII	GRGCYC	2 cut(s)	224, 1627
BbsI	GAAGAC	2 cut(s)	207, 1116
Bbv12I	GWGCWC	1 cut(s)	1627
BbvCI	CCTCAGC	1 cut(s)	1044
BbvI	GCAGC	6 cut(s)	429, 472, 500, 565, 953, 2074
BccI	CCATC	5 cut(s)	605, 1396, 1426, 1435, 1586
BceAI	ACGGC	3 cut(s)	336, 500, 723
BciT130I	CCWGG	2 cut(s)	333, 1935
BciVI	GTATCC	1 cut(s)	2133
BcoDI	GTCTC	4 cut(s)	398, 476, 523, 596
BfaI	CTAG	9 cut(s)	588, 696, 1302, 1628, 1820, 1904, 2066, 2202, 2335
BfmI	CTRYAG	3 cut(s)	486, 579, 1813
BfuI	GTATCC	1 cut(s)	2133
BglI	GCCNNNNNGGC	1 cut(s)	1433
BglII	AGATCT	2 cut(s)	1012, 2169
BisI	GCNGC	8 cut(s)	443, 486, 489, 579, 711, 942, 2088, 2256
BlsI	GCNGC	8 cut(s)	444, 487, 490, 580, 712, 943, 2089, 2257
Bme1390I	CCNGG	2 cut(s)	333, 1935
Bme18I	GGWCC	4 cut(s)	168, 335, 614, 2321
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmeT110I	CYCGRG	4 cut(s)	386, 1114, 1128, 2188
BmgBI	CACGTC	1 cut(s)	1567
BmgT120I	GGNCC	4 cut(s)	168, 335, 614, 2321
BmrFI	CCNGG	2 cut(s)	333, 1935
BmsI	GCATC	8 cut(s)	454, 1081, 1537, 1586, 1825, 1930, 2022, 2172
BpiI	GAAGAC	2 cut(s)	207, 1116
BplI	GAGNNNNNCTC	2 cut(s)	2171, 2203
Bpu10I	CCTNAGC	1 cut(s)	1044
BpuEI	CTTGAG	2 cut(s)	1225, 1331
BsaHI	GRCGYC	2 cut(s)	23, 1324
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	5 cut(s)	331, 466, 480, 745, 1763
BsaWI	WCCGGW	3 cut(s)	79, 602, 616
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	4 cut(s)	481, 682, 1885, 2048
Bse1I	ACTGG	1 cut(s)	676
Bse3DI	GCAATG	3 cut(s)	436, 1323, 1713
BseAI	TCCGGA	2 cut(s)	602, 616
BseBI	CCWGG	2 cut(s)	333, 1935
BseDI	CCNNGG	5 cut(s)	331, 466, 480, 745, 1763
BseGI	GGATG	7 cut(s)	96, 1108, 1138, 1446, 1601, 1840, 2199
BseLI	CCNNNNNNNGG	4 cut(s)	481, 682, 1885, 2048
BseMI	GCAATG	3 cut(s)	436, 1323, 1713
BseMII	CTCAG	5 cut(s)	243, 780, 966, 1035, 1853
BseNI	ACTGG	1 cut(s)	676
BsePI	GCGCGC	1 cut(s)	400
BseRI	GAGGAG	4 cut(s)	263, 464, 2016, 2144
BseXI	GCAGC	6 cut(s)	429, 472, 500, 565, 953, 2074
Bsh1236I	CGCG	5 cut(s)	400, 402, 421, 652, 1787
BshFI	GGCC	2 cut(s)	501, 700
BsiHKAI	GWGCWC	1 cut(s)	1627
BsiHKCI	CYCGRG	4 cut(s)	386, 1114, 1128, 2188
BsiSI	CCGG	4 cut(s)	80, 177, 603, 617
BslI	CCNNNNNNNGG	4 cut(s)	481, 682, 1885, 2048
BsmAI	GTCTC	4 cut(s)	398, 476, 523, 596
BsmBI	CGTCTC	1 cut(s)	523
BsmI	GAATGC	4 cut(s)	928, 1040, 1311, 1599
BsnI	GGCC	2 cut(s)	501, 700
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	4 cut(s)	386, 1114, 1128, 2188
Bsp1286I	GDGCHC	2 cut(s)	224, 1627
Bsp13I	TCCGGA	2 cut(s)	602, 616
Bsp143I	GATC	8 cut(s)	1012, 1192, 1245, 1554, 1759, 1782, 2017, 2169
Bsp19I	CCATGG	1 cut(s)	480
BspANI	GGCC	2 cut(s)	501, 700
BspCNI	CTCAG	5 cut(s)	242, 781, 967, 1036, 1852
BspEI	TCCGGA	2 cut(s)	602, 616
BspFNI	CGCG	5 cut(s)	400, 402, 421, 652, 1787
BspMAI	CTGCAG	3 cut(s)	490, 583, 1817
BspPI	GGATC	5 cut(s)	1187, 1253, 1562, 1754, 2012
BspTNI	GGTCTC	1 cut(s)	476
BsrBI	CCGCTC	1 cut(s)	2255
BsrDI	GCAATG	3 cut(s)	436, 1323, 1713
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	5 cut(s)	331, 466, 480, 745, 1763
BssHII	GCGCGC	1 cut(s)	400
BssMI	GATC	8 cut(s)	1012, 1192, 1245, 1554, 1759, 1782, 2017, 2169
BssNI	GRCGYC	2 cut(s)	23, 1324
BssT1I	CCWWGG	3 cut(s)	480, 745, 1763
Bst2UI	CCWGG	2 cut(s)	333, 1935
Bst4CI	ACNGT	3 cut(s)	168, 1343, 1372
Bst6I	CTCTTC	3 cut(s)	641, 1059, 1140
BstACI	GRCGYC	2 cut(s)	23, 1324
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstC8I	GCNNGC	4 cut(s)	402, 440, 1817, 1923
BstDSI	CCRYGG	1 cut(s)	480
BstEII	GGTNACC	1 cut(s)	671
BstF5I	GGATG	7 cut(s)	96, 1108, 1138, 1446, 1601, 1840, 2199
BstFNI	CGCG	5 cut(s)	400, 402, 421, 652, 1787
BstHHI	GCGC	4 cut(s)	402, 404, 423, 1619
BstKTI	GATC	8 cut(s)	1015, 1195, 1248, 1557, 1762, 1785, 2020, 2172
BstMAI	GTCTC	4 cut(s)	398, 476, 523, 596
BstMBI	GATC	8 cut(s)	1012, 1192, 1245, 1554, 1759, 1782, 2017, 2169
BstNI	CCWGG	2 cut(s)	333, 1935
BstNSI	RCATGY	3 cut(s)	1798, 2124, 2213
BstPI	GGTNACC	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	331, 1933
BstSFI	CTRYAG	3 cut(s)	486, 579, 1813
BstUI	CGCG	5 cut(s)	400, 402, 421, 652, 1787
BstV1I	GCAGC	6 cut(s)	429, 472, 500, 565, 953, 2074
BstV2I	GAAGAC	2 cut(s)	207, 1116
BstX2I	RGATCY	4 cut(s)	1012, 1245, 2017, 2169
BstYI	RGATCY	4 cut(s)	1012, 1245, 2017, 2169
BsuI	GTATCC	1 cut(s)	2133
BsuRI	GGCC	2 cut(s)	501, 700
BtgI	CCRYGG	1 cut(s)	480
BtgZI	GCGATG	3 cut(s)	431, 625, 1007
BtrI	CACGTC	1 cut(s)	1567
BtsCI	GGATG	7 cut(s)	96, 1108, 1138, 1446, 1601, 1840, 2199
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	4 cut(s)	402, 440, 1817, 1923
CaiI	CAGNNNCTG	1 cut(s)	2021
CfoI	GCGC	4 cut(s)	402, 404, 423, 1619
Cfr13I	GGNCC	4 cut(s)	168, 335, 614, 2321
CpoI	CGGWCCG	1 cut(s)	168
CseI	GACGC	2 cut(s)	464, 1313
CsiI	ACCWGGT	1 cut(s)	1933
Csp6I	GTAC	2 cut(s)	1810, 2161
CspCI	CAANNNNNGTGG	2 cut(s)	1197, 1232
CspI	CGGWCCG	1 cut(s)	168
CviAII	CATG	6 cut(s)	481, 535, 560, 1795, 2121, 2210
CviQI	GTAC	2 cut(s)	1810, 2161
DpnI	GATC	8 cut(s)	1014, 1194, 1247, 1556, 1761, 1784, 2019, 2171
DpnII	GATC	8 cut(s)	1012, 1192, 1245, 1554, 1759, 1782, 2017, 2169
DrdI	GACNNNNNNGTC	1 cut(s)	342
DriI	GACNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	3 cut(s)	641, 1059, 1140
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	3 cut(s)	641, 1059, 1140
EciI	GGCGGA	2 cut(s)	160, 184
Ecl136II	GAGCTC	1 cut(s)	1625
Eco130I	CCWWGG	3 cut(s)	480, 745, 1763
Eco147I	AGGCCT	1 cut(s)	700
Eco24I	GRGCYC	2 cut(s)	224, 1627
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	4 cut(s)	168, 335, 614, 2321
Eco53kI	GAGCTC	1 cut(s)	1625
Eco57I	CTGAAG	4 cut(s)	1563, 1986, 1998, 2280
Eco88I	CYCGRG	4 cut(s)	386, 1114, 1128, 2188
Eco91I	GGTNACC	1 cut(s)	671
EcoICRI	GAGCTC	1 cut(s)	1625
EcoO65I	GGTNACC	1 cut(s)	671
EcoRII	CCWGG	2 cut(s)	331, 1933
EcoT14I	CCWWGG	3 cut(s)	480, 745, 1763
EcoT22I	ATGCAT	2 cut(s)	930, 1601
EcoT38I	GRGCYC	2 cut(s)	224, 1627
ErhI	CCWWGG	3 cut(s)	480, 745, 1763
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	6 cut(s)	484, 538, 563, 1798, 2124, 2213
FatI	CATG	6 cut(s)	480, 534, 559, 1794, 2120, 2209
FauI	CCCGC	2 cut(s)	1543, 2229
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	8 cut(s)	443, 486, 489, 579, 711, 942, 2088, 2256
FokI	GGATG	7 cut(s)	83, 1115, 1145, 1453, 1608, 1847, 2206
FriOI	GRGCYC	2 cut(s)	224, 1627
Fsp4HI	GCNGC	8 cut(s)	443, 486, 489, 579, 711, 942, 2088, 2256
FspBI	CTAG	9 cut(s)	588, 696, 1302, 1628, 1820, 1904, 2066, 2202, 2335
GlaI	GCGC	4 cut(s)	401, 403, 422, 1618
GluI	GCNGC	8 cut(s)	443, 486, 489, 579, 711, 942, 2088, 2256
HaeIII	GGCC	2 cut(s)	501, 700
HapII	CCGG	4 cut(s)	80, 177, 603, 617
HgaI	GACGC	2 cut(s)	464, 1313
HhaI	GCGC	4 cut(s)	402, 404, 423, 1619
Hin1I	GRCGYC	2 cut(s)	23, 1324
Hin1II	CATG	6 cut(s)	484, 538, 563, 1798, 2124, 2213
Hin6I	GCGC	4 cut(s)	400, 402, 421, 1617
HinP1I	GCGC	4 cut(s)	400, 402, 421, 1617
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HindIII	AAGCTT	3 cut(s)	297, 836, 2262
HinfI	GANTC	8 cut(s)	391, 538, 623, 657, 1112, 1238, 1900, 2006
HpaII	CCGG	4 cut(s)	80, 177, 603, 617
HphI	GGTGA	7 cut(s)	130, 683, 761, 1214, 1337, 1949, 1993
Hpy166II	GTNNAC	3 cut(s)	152, 573, 2199
Hpy188III	TCNNGA	8 cut(s)	603, 617, 814, 1130, 1168, 1328, 1854, 2098
Hpy8I	GTNNAC	3 cut(s)	152, 573, 2199
Hpy99I	CGWCG	4 cut(s)	25, 43, 657, 1258
HpyAV	CCTTC	8 cut(s)	853, 1048, 1690, 1799, 1951, 2010, 2042, 2095
HpyCH4III	ACNGT	3 cut(s)	168, 1343, 1372
HpyCH4IV	ACGT	3 cut(s)	23, 1256, 1566
HpySE526I	ACGT	3 cut(s)	23, 1256, 1566
Hsp92I	GRCGYC	2 cut(s)	23, 1324
Hsp92II	CATG	6 cut(s)	484, 538, 563, 1798, 2124, 2213
HspAI	GCGC	4 cut(s)	400, 402, 421, 1617
Kpn2I	TCCGGA	2 cut(s)	602, 616
Kzo9I	GATC	8 cut(s)	1012, 1192, 1245, 1554, 1759, 1782, 2017, 2169
LmnI	GCTCC	3 cut(s)	197, 1622, 2029
Lsp1109I	GCAGC	6 cut(s)	429, 472, 500, 565, 953, 2074
LweI	GCATC	8 cut(s)	454, 1081, 1537, 1586, 1825, 1930, 2022, 2172
MabI	ACCWGGT	1 cut(s)	1933
MaeI	CTAG	9 cut(s)	588, 696, 1302, 1628, 1820, 1904, 2066, 2202, 2335
MaeII	ACGT	3 cut(s)	23, 1256, 1566
MaeIII	GTNAC	4 cut(s)	671, 1343, 1357, 1679
MalI	GATC	8 cut(s)	1014, 1194, 1247, 1556, 1761, 1784, 2019, 2171
MbiI	CCGCTC	1 cut(s)	2255
MboI	GATC	8 cut(s)	1012, 1192, 1245, 1554, 1759, 1782, 2017, 2169
MflI	RGATCY	4 cut(s)	1012, 1245, 2017, 2169
MhlI	GDGCHC	2 cut(s)	224, 1627
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	6 cut(s)	156, 365, 460, 863, 1172, 2290
MluNI	TGGCCA	1 cut(s)	501
MlyI	GAGTC	5 cut(s)	400, 666, 1106, 1232, 1909
MmeI	TCCRAC	5 cut(s)	37, 44, 187, 836, 861
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	2 cut(s)	930, 1601
MroI	TCCGGA	2 cut(s)	602, 616
MroXI	GAANNNNTTC	1 cut(s)	773
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	6 cut(s)	71, 564, 717, 729, 834, 906
MslI	CAYNNNNRTG	1 cut(s)	1350
Msp20I	TGGCCA	1 cut(s)	501
MspA1I	CMGCKG	2 cut(s)	442, 578
MspI	CCGG	4 cut(s)	80, 177, 603, 617
MspR9I	CCNGG	2 cut(s)	333, 1935
Mva1269I	GAATGC	4 cut(s)	928, 1040, 1311, 1599
MvaI	CCWGG	2 cut(s)	333, 1935
MvnI	CGCG	5 cut(s)	400, 402, 421, 652, 1787
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	8 cut(s)	1012, 1192, 1245, 1554, 1759, 1782, 2017, 2169
NlaIII	CATG	6 cut(s)	484, 538, 563, 1798, 2124, 2213
NmeAIII	GCCGAG	1 cut(s)	1453
NmuCI	GTSAC	2 cut(s)	671, 1343
NsiI	ATGCAT	2 cut(s)	930, 1601
NspI	RCATGY	3 cut(s)	1798, 2124, 2213
PaeR7I	CTCGAG	1 cut(s)	2188
PauI	GCGCGC	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	700
PciI	ACATGT	1 cut(s)	1794
PcsI	WCGNNNNNNNCGW	4 cut(s)	519, 661, 1193, 1563
PctI	GAATGC	4 cut(s)	928, 1040, 1311, 1599
PdmI	GAANNNNTTC	1 cut(s)	773
PfeI	GAWTC	3 cut(s)	538, 623, 2006
PflMI	CCANNNNNTGG	1 cut(s)	682
PkrI	GCNGC	8 cut(s)	444, 487, 490, 580, 712, 943, 2089, 2257
PleI	GAGTC	5 cut(s)	399, 665, 1106, 1232, 1908
PpsI	GAGTC	5 cut(s)	399, 665, 1106, 1232, 1908
PscI	ACATGT	1 cut(s)	1794
PsiI	TTATAA	2 cut(s)	1470, 1586
Psp124BI	GAGCTC	1 cut(s)	1627
Psp6I	CCWGG	2 cut(s)	331, 1933
PspEI	GGTNACC	1 cut(s)	671
PspGI	CCWGG	2 cut(s)	331, 1933
PspPI	GGNCC	4 cut(s)	168, 335, 614, 2321
PspXI	VCTCGAGB	1 cut(s)	2188
PstI	CTGCAG	3 cut(s)	490, 583, 1817
PstNI	CAGNNNCTG	1 cut(s)	2021
PsuI	RGATCY	4 cut(s)	1012, 1245, 2017, 2169
PteI	GCGCGC	1 cut(s)	400
PvuII	CAGCTG	2 cut(s)	442, 578
RsaI	GTAC	2 cut(s)	1811, 2162
RsaNI	GTAC	2 cut(s)	1810, 2161
RseI	CAYNNNNRTG	1 cut(s)	1350
Rsr2I	CGGWCCG	1 cut(s)	168
RsrII	CGGWCCG	1 cut(s)	168
SacI	GAGCTC	1 cut(s)	1627
SalI	GTCGAC	1 cut(s)	150
SaqAI	TTAA	6 cut(s)	71, 564, 717, 729, 834, 906
SatI	GCNGC	8 cut(s)	443, 486, 489, 579, 711, 942, 2088, 2256
Sau3AI	GATC	8 cut(s)	1012, 1192, 1245, 1554, 1759, 1782, 2017, 2169
Sau96I	GGNCC	4 cut(s)	168, 335, 614, 2321
SchI	GAGTC	5 cut(s)	400, 666, 1106, 1232, 1909
ScrFI	CCNGG	2 cut(s)	333, 1935
SduI	GDGCHC	2 cut(s)	224, 1627
SexAI	ACCWGGT	1 cut(s)	1933
SfaNI	GCATC	8 cut(s)	454, 1081, 1537, 1586, 1825, 1930, 2022, 2172
SfcI	CTRYAG	3 cut(s)	486, 579, 1813
Sfr274I	CTCGAG	1 cut(s)	2188
SinI	GGWCC	4 cut(s)	168, 335, 614, 2321
SlaI	CTCGAG	1 cut(s)	2188
SmiMI	CAYNNNNRTG	1 cut(s)	1350
SmlI	CTYRAG	3 cut(s)	1240, 1310, 2188
SmoI	CTYRAG	3 cut(s)	1240, 1310, 2188
Sse9I	AATT	6 cut(s)	156, 365, 460, 863, 1172, 2290
SseBI	AGGCCT	1 cut(s)	700
SspMI	CTAG	9 cut(s)	588, 696, 1302, 1628, 1820, 1904, 2066, 2202, 2335
SstI	GAGCTC	1 cut(s)	1627
StuI	AGGCCT	1 cut(s)	700
StyD4I	CCNGG	2 cut(s)	331, 1933
StyI	CCWWGG	3 cut(s)	480, 745, 1763
TaaI	ACNGT	3 cut(s)	168, 1343, 1372
TaiI	ACGT	3 cut(s)	26, 1259, 1569
TaqI	TCGA	4 cut(s)	151, 777, 1557, 2189
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	6 cut(s)	156, 365, 460, 863, 1172, 2290
TatI	WGTACW	1 cut(s)	2160
TauI	GCSGC	2 cut(s)	713, 2258
TfiI	GAWTC	3 cut(s)	538, 623, 2006
Tru1I	TTAA	6 cut(s)	71, 564, 717, 729, 834, 906
Tru9I	TTAA	6 cut(s)	71, 564, 717, 729, 834, 906
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	671, 1343
TseI	GCWGC	6 cut(s)	442, 485, 488, 578, 941, 2087
Tsp45I	GTSAC	2 cut(s)	671, 1343
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	1 cut(s)	187
Van91I	CCANNNNNTGG	1 cut(s)	682
VpaK11BI	GGWCC	4 cut(s)	168, 335, 614, 2321
XceI	RCATGY	3 cut(s)	1798, 2124, 2213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XhoI	CTCGAG	1 cut(s)	2188
XmiI	GTMKAC	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	773
XspI	CTAG	9 cut(s)	588, 696, 1302, 1628, 1820, 1904, 2066, 2202, 2335
ZraI	GACGTC	1 cut(s)	24
Zsp2I	ATGCAT	2 cut(s)	930, 1601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.