Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028512.1

Orthogroup ID

OG0017189

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 693

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028512.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgctccgctccggcttcctcccccacgtcaaggcctggagcgccgtcgtcagccgcctcgctgcctccggcgacgacggcccttccgaagcgctcaagctcttctactcggtcacgcgccgcgtccagaggttcgccgagccggaactggtggcggactcgcggccggacacggcggcgttcaatgccgcgctgaatgcttgtgctaatttgggtgatacagataggttcttgaagctgttcgacgaaatgcctgagtcaggtgccgagccggatgtgcttacttataatgtgatgatcaagctctgcgctagggttggaaggaaggacttgcttgtttttgtgttggagaggattttggagcaggggatcacagtgtgtatgaccacattgaattccctggttgcggcttatgttggtttcggagacttggaaactgcggagaggatggttcaggcaatgagggaagggaggagagacctctgcaagattctaagggaggcaaatttgaggagttcgaattctagtggaagagatggggatgtgtttgagaggttgcttccaaattcagttacagctagtgaacgtgagccgccattgttgccgaaagcctatacttctaactctaggatttacactacactgatgaagggttatatgaatgctgggcgtgttactgacacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

228

Amino Acids

25.19

Weight (kDa)

6.63

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09650
fragaria_vesca	FvH4_6g15290
prunus_persica	Prupe.6G241600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468701
rosa_laevigata	RLG00000024415
rosa_multiflora	Rmu_sc0011538.1_g000002 Rmu_sc0028512.1_g000001 Rmu_sc0033138.1_g000003
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145300 Rh3BG168000 Rh3DG166600
rosa_wichuraiana	Rw3G013690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	9
AccII	CGCG	4 cut(s)	118, 123, 163, 191
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	4 cut(s)	394, 505, 520, 565
AdeI	CACNNNGTG	1 cut(s)	378
AfeI	AGCGCT	1 cut(s)	93
AfiI	CCNNNNNNNGG	3 cut(s)	31, 260, 406
AgsI	TTSAA	3 cut(s)	184, 235, 394
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	35, 399
AluBI	AGCT	4 cut(s)	100, 238, 304, 578
AluI	AGCT	4 cut(s)	100, 238, 304, 578
Alw26I	GTCTC	2 cut(s)	420, 471
AlwI	GGATC	1 cut(s)	377
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	3 cut(s)	33, 79, 164
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	4 cut(s)	394, 505, 520, 565
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	5 cut(s)	44, 94, 120, 193, 311
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	2 cut(s)	442, 530
BceAI	ACGGC	3 cut(s)	29, 94, 189
BciT130I	CCWGG	2 cut(s)	37, 401
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	420, 471
BfaI	CTAG	4 cut(s)	312, 525, 579, 627
BfoI	RGCGCY	2 cut(s)	45, 95
BisI	GCNGC	8 cut(s)	55, 63, 121, 164, 177, 189, 408, 593
BlsI	GCNGC	8 cut(s)	56, 64, 122, 165, 178, 190, 409, 594
Bme1390I	CCNGG	2 cut(s)	37, 401
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	37, 401
BpmI	CTGGAG	1 cut(s)	58
Bpu14I	TTCGAA	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 260, 406
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	37, 401
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	3 cut(s)	280, 453, 547
BseLI	CCNNNNNNNGG	3 cut(s)	31, 260, 406
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	2 cut(s)	487, 526
BseX3I	CGGCCG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	665
Bsh1236I	CGCG	4 cut(s)	118, 123, 163, 191
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	35, 81, 166
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	167
BsiSI	CCGG	5 cut(s)	12, 69, 143, 167, 272
BslI	CCNNNNNNNGG	3 cut(s)	31, 260, 406
BsmAI	GTCTC	2 cut(s)	420, 471
BsmI	GAATGC	2 cut(s)	202, 667
BsnI	GGCC	3 cut(s)	35, 81, 166
Bso31I	GGTCTC	1 cut(s)	471
Bsp119I	TTCGAA	1 cut(s)	518
Bsp143I	GATC	2 cut(s)	297, 369
BspANI	GGCC	3 cut(s)	35, 81, 166
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	4 cut(s)	118, 123, 163, 191
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	107
BspT104I	TTCGAA	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	471
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	2 cut(s)	297, 369
Bst2UI	CCWGG	2 cut(s)	37, 401
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	2 cut(s)	107, 526
BstBI	TTCGAA	1 cut(s)	518
BstDEI	CTNAG	2 cut(s)	255, 494
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	3 cut(s)	280, 453, 547
BstFNI	CGCG	4 cut(s)	118, 123, 163, 191
BstH2I	RGCGCY	2 cut(s)	45, 95
BstHHI	GCGC	5 cut(s)	44, 94, 120, 193, 311
BstKTI	GATC	2 cut(s)	300, 372
BstMAI	GTCTC	2 cut(s)	420, 471
BstMBI	GATC	2 cut(s)	297, 369
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 78, 185, 197, 277, 601
BstNI	CCWGG	2 cut(s)	37, 401
BstSCI	CCNGG	2 cut(s)	35, 399
BstUI	CGCG	4 cut(s)	118, 123, 163, 191
BstV1I	GCAGC	1 cut(s)	49
BstZI	CGGCCG	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	35, 81, 166
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	280, 453, 547
BtsIMutI	CAGTG	2 cut(s)	381, 641
CfoI	GCGC	5 cut(s)	44, 94, 120, 193, 311
Cfr13I	GGNCC	1 cut(s)	80
CseI	GACGC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	255, 494
DpnI	GATC	2 cut(s)	299, 371
DpnII	GATC	2 cut(s)	297, 369
DraIII	CACNNNGTG	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	164
EagI	CGGCCG	1 cut(s)	164
Eam1104I	CTCTTC	2 cut(s)	107, 526
EarI	CTCTTC	2 cut(s)	107, 526
EciI	GGCGGA	1 cut(s)	170
EclXI	CGGCCG	1 cut(s)	164
Eco147I	AGGCCT	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	471
Eco47III	AGCGCT	1 cut(s)	93
Eco52I	CGGCCG	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoRI	GAATTC	2 cut(s)	394, 520
EcoRII	CCWGG	2 cut(s)	35, 399
FaiI	YATR	6 cut(s)	288, 383, 414, 615, 657, 659
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	8 cut(s)	55, 63, 121, 164, 177, 189, 408, 593
FokI	GGATG	3 cut(s)	287, 460, 554
Fsp4HI	GCNGC	8 cut(s)	55, 63, 121, 164, 177, 189, 408, 593
FspBI	CTAG	4 cut(s)	312, 525, 579, 627
GlaI	GCGC	5 cut(s)	43, 93, 119, 192, 310
GluI	GCNGC	8 cut(s)	55, 63, 121, 164, 177, 189, 408, 593
GsaI	CCCAGC	1 cut(s)	669
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	2 cut(s)	45, 95
HaeIII	GGCC	3 cut(s)	35, 81, 166
HapII	CCGG	5 cut(s)	12, 69, 143, 167, 272
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	5 cut(s)	44, 94, 120, 193, 311
Hin6I	GCGC	5 cut(s)	42, 92, 118, 191, 309
HinP1I	GCGC	5 cut(s)	42, 92, 118, 191, 309
HinfI	GANTC	3 cut(s)	158, 257, 490
HpaII	CCGG	5 cut(s)	12, 69, 143, 167, 272
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	2 cut(s)	88, 425
Hpy188III	TCNNGA	2 cut(s)	127, 232
Hpy8I	GTNNAC	1 cut(s)	584
Hpy99I	CGWCG	4 cut(s)	50, 77, 80, 248
HpyAV	CCTTC	5 cut(s)	93, 315, 319, 461, 643
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	2 cut(s)	27, 586
HpyCH4V	TGCA	1 cut(s)	486
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 78, 185, 197, 277, 601
HpyF3I	CTNAG	2 cut(s)	255, 494
HpySE526I	ACGT	2 cut(s)	27, 586
HspAI	GCGC	5 cut(s)	42, 92, 118, 191, 309
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	297, 369
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	4 cut(s)	9, 14, 39, 361
Lsp1109I	GCAGC	1 cut(s)	49
MaeI	CTAG	4 cut(s)	312, 525, 579, 627
MaeII	ACGT	2 cut(s)	27, 586
MaeIII	GTNAC	3 cut(s)	112, 571, 673
MalI	GATC	2 cut(s)	299, 371
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	2 cut(s)	297, 369
MboII	GAAGA	2 cut(s)	94, 543
MluCI	AATT	5 cut(s)	208, 394, 505, 520, 565
MlyI	GAGTC	2 cut(s)	152, 266
MmeI	TCCRAC	2 cut(s)	298, 327
MroXI	GAANNNNTTC	1 cut(s)	239
MspI	CCGG	5 cut(s)	12, 69, 143, 167, 272
MspR9I	CCNGG	2 cut(s)	37, 401
Mva1269I	GAATGC	2 cut(s)	202, 667
MvaI	CCWGG	2 cut(s)	37, 401
MvnI	CGCG	4 cut(s)	118, 123, 163, 191
MwoI	GCNNNNNNNGC	6 cut(s)	41, 78, 185, 197, 277, 601
NdeII	GATC	2 cut(s)	297, 369
NlaIV	GGNNCC	1 cut(s)	265
NmeAIII	GCCGAG	2 cut(s)	163, 292
NmuCI	GTSAC	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	2 cut(s)	202, 667
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	8 cut(s)	56, 64, 122, 165, 178, 190, 409, 594
PleI	GAGTC	2 cut(s)	152, 265
PpsI	GAGTC	2 cut(s)	152, 265
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	35, 399
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	2 cut(s)	35, 399
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	107
SatI	GCNGC	8 cut(s)	55, 63, 121, 164, 177, 189, 408, 593
Sau3AI	GATC	2 cut(s)	297, 369
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	152, 266
ScrFI	CCNGG	2 cut(s)	37, 401
SfuI	TTCGAA	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	5 cut(s)	208, 394, 505, 520, 565
SseBI	AGGCCT	1 cut(s)	35
SspMI	CTAG	4 cut(s)	312, 525, 579, 627
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	35, 399
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	2 cut(s)	30, 589
TaqI	TCGA	2 cut(s)	243, 518
TaqII	GACCGA	1 cut(s)	100
TasI	AATT	5 cut(s)	208, 394, 505, 520, 565
TauI	GCSGC	7 cut(s)	57, 123, 166, 179, 191, 410, 595
TfiI	GAWTC	1 cut(s)	490
TscAI	CASTG	2 cut(s)	381, 648
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	662, 674
TspRI	CASTG	2 cut(s)	381, 648
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	4 cut(s)	394, 505, 520, 565
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	4 cut(s)	312, 525, 579, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.