Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0017189

Physical Location & Seq

Genomic Coordinates Forward (+)

12873153 .. 12874871

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG145300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGCTCCGCTCCGGCTTCCTCCCCCACGTCAAGGCCTGGAGCGCCGTCGTCAGCCGCCTCGCTGCCTCCGGCGACGACGGCCCTTCCGAAGCGCTCAAGCTCTTCTATTCCGTCACGCGCCGCGTCCGGAGGTTCGCCGAGCCGGAGCTGGTGGCGGACTCGCGGCCGGACACGGCGGCGTTCAATGCCGCGCTGAATGCTTGTGCTAATTTGGGTGATACAGATAGGTTCTTGAAGCTGTTCGACGAAATGCCTGAGTCAGGTGCCGAGCCGGATGTGCTTACTTATAATGTGATGATCAAGCTCTGCGCTAGAGTTGGAAGGAAGGACTTGCTTGTTTTTGTGTTGGAGAGGATTTTGGAGCAGGGGATCACAGTGTGTATGACTACATTGAATTCCCTCGTTGCGGCTTATGTTGGTTTCGGAGACTTGGAAACTGCGGAGAGGATGGTTCAGGCAATGAGGGAAGGGAGGAGAGACCTCTGCAAGATTCTAAGGGAGGCAAATTTGAGGAGTTCGAATTCTAGTGGAAGAGATGGGGATGTGTTTGAGAGGTTGCTTCCGAATTCAGTTACAGCTAGTGAACGTGAGCCGCCATTGTTGCCAAAAGCGTATACTTCTAACTCGAGGATTTACACTACACTGATGAAGGGTTATATGAATGCTGGGCGTGTTACTGACACGGTTCGGATGCTAGAGGCACTGAGGCACCAGGATGATAGCTCGAGTCAGCCTGACCATGTGACATATACAACTGTTATTTCTGCATTTGTGAAGGCGGGTTCCATGGACCGTGCTCGCAGGGTTCTAGCTGAGATGACGAGAGTTGGCGTGCCTGCAAATCGGATAACGTATAACATTCTTCTCAAGGGTTATTGTCAGCAGCTGCAGATAGACCAGGCAAAGGAGCTGGTTAGAGAGATGACTGAGGATGCGGGGATTGAGCCTGATGTGGTTTCGTATAACATCTTGATCGATGGGTGCATACAGGTTGATGACAGTGCTGGTGCTCTTGCTTTTTTCAATGAAATGAGAGCAAAAGGAATTGCTCCCACCAAGATCAGCTACACCACTTTGATGAAAGCTTTTGCCTTGTCTGGACAGCCAAAGCTGGCTAACAAGGTATTCGAAGAAATGCTTAACGATCCTCGGGTGAAGGCTGATTTGGTAGCTTGGAACATGTTGGTCGAAGGGTATTGCAGACTGGGGTTGGTTGAAGAATCCAAGAAAATCATTCAGAGAATGAAAGAGCATGGGTTTCACCCTGATGTGGCTACTTATGGTAGCCTAGCTAATGGTATAGCATTGGCTAGAAAACCAGGAGAGGCACTTTTGCTCTGGAATGAAGTGAAGGACAGATGTACAGCGAAAAAGGAAGGTGAAAAGTCTGATGATTCAGATCCTCCAACATTGAAACCTGATGAAGGGCTATTGGATACGTTGGCTGATATTTGTGTTAGGGCTGCTTTCTTTAAGAAGGCTCTGGAAATTGTCGCTTGTATGGAAGAGAATGGTATTCCTCCGAACAAGACCAAGTTCACTAAAATCTATGTGGAGATGCATTCGAGGATGTTTACTAGTAAGCACGCCTCACAGGCTAGGCAGGACAGGAGGAGTGAAAGGAAGAGAGCAGCTGAGGCTTTCAAGTTTTGGTTGGGTTTACCCAATTCTTATTATGGGAGTGAATGGAGGTTAGGATCTTTGGATGGAGATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

572

Amino Acids

63.76

Weight (kDa)

7.51

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	55 - 103	1.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	56 - 105	3.5e-12	PPR repeat family
TPR_24	PF23276	222 - 343	1.8e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	229 - 330	1.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	244 - 274	1.6e-07	PPR repeat
PPR_3	PF13812	244 - 292	2.9e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	245 - 294	5.6e-15	PPR repeat family
PPR	PF01535	248 - 278	5.3e-06	PPR repeat
PPR_1	PF12854	277 - 309	3.4e-08	PPR repeat
PPR_2	PF13041	281 - 329	2e-14	PPR repeat family
PPR_3	PF13812	304 - 363	3.6e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	316 - 364	3.2e-14	PPR repeat family
PPR_2	PF13041	388 - 434	1.5e-10	PPR repeat family
PPR	PF01535	390 - 420	3.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09650
fragaria_vesca	FvH4_6g15290
prunus_persica	Prupe.6G241600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468701
rosa_laevigata	RLG00000024415
rosa_multiflora	Rmu_sc0011538.1_g000002 Rmu_sc0028512.1_g000001 Rmu_sc0033138.1_g000003
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145300 Rh3BG168000 Rh3DG166600
rosa_wichuraiana	Rw3G013690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AccB1I	GGYRCC	2 cut(s)	263, 708
AccBSI	CCGCTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	614
AccII	CGCG	4 cut(s)	118, 123, 163, 191
AccIII	TCCGGA	1 cut(s)	126
AclWI	GGATC	4 cut(s)	377, 1139, 1394, 1705
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	4 cut(s)	394, 505, 520, 565
AdeI	CACNNNGTG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	1363
AfeI	AGCGCT	1 cut(s)	93
AfiI	CCNNNNNNNGG	6 cut(s)	31, 260, 406, 904, 1270, 1424
AflIII	ACRYGT	1 cut(s)	1179
AgsI	TTSAA	7 cut(s)	184, 235, 394, 1024, 1217, 1414, 1645
AhlI	ACTAGT	1 cut(s)	1577
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	4 cut(s)	35, 711, 897, 1318
AjuI	GAANNNNNNNTTGG	2 cut(s)	1148, 1180
Alw21I	GWGCWC	2 cut(s)	799, 1012
Alw26I	GTCTC	2 cut(s)	420, 471
AlwI	GGATC	4 cut(s)	377, 1139, 1394, 1705
AlwNI	CAGNNNCTG	1 cut(s)	886
Ama87I	CYCGRG	3 cut(s)	625, 724, 1149
Aor13HI	TCCGGA	1 cut(s)	126
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	3 cut(s)	33, 79, 164
ApeKI	GCWGC	5 cut(s)	62, 883, 886, 1463, 1631
ApoI	RAATTY	4 cut(s)	394, 505, 520, 565
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	5 cut(s)	44, 94, 120, 193, 311
AspS9I	GGNCC	2 cut(s)	80, 790
AsuHPI	GGTGA	4 cut(s)	227, 1165, 1253, 1391
AsuII	TTCGAA	2 cut(s)	518, 1128
AvaI	CYCGRG	3 cut(s)	625, 724, 1149
AvaII	GGWCC	1 cut(s)	790
BanI	GGYRCC	2 cut(s)	263, 708
Bbv12I	GWGCWC	2 cut(s)	799, 1012
BbvCI	CCTCAGC	1 cut(s)	1635
BbvI	GCAGC	5 cut(s)	49, 873, 895, 1450, 1643
BccI	CCATC	4 cut(s)	442, 530, 971, 1700
BceAI	ACGGC	3 cut(s)	29, 94, 189
BciT130I	CCWGG	4 cut(s)	37, 713, 899, 1320
BciVI	GTATCC	1 cut(s)	1429
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	420, 471
BcuI	ACTAGT	1 cut(s)	1577
BfaI	CTAG	9 cut(s)	312, 525, 579, 695, 809, 1289, 1311, 1578, 1599
BfmI	CTRYAG	1 cut(s)	887
BfoI	RGCGCY	2 cut(s)	45, 95
BfuI	GTATCC	1 cut(s)	1429
BglI	GCCNNNNNGGC	1 cut(s)	1595
Bme1390I	CCNGG	4 cut(s)	37, 713, 899, 1320
Bme18I	GGWCC	1 cut(s)	790
BmeT110I	CYCGRG	3 cut(s)	625, 724, 1149
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	80, 790
BmiI	GGNNCC	3 cut(s)	265, 710, 784
BmrFI	CCNGG	4 cut(s)	37, 713, 899, 1320
BmrI	ACTGGG	1 cut(s)	1214
BmsI	GCATC	3 cut(s)	681, 922, 1548
BmuI	ACTGGG	1 cut(s)	1214
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	1635
Bpu14I	TTCGAA	2 cut(s)	518, 1128
BpuEI	CTTGAG	2 cut(s)	80, 851
Bsa29I	ATCGAT	1 cut(s)	975
BsaBI	GATNNNNATC	1 cut(s)	1398
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	786, 1148
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 260, 406, 904, 1270, 1424
Bse1I	ACTGG	1 cut(s)	1209
Bse3DI	GCAATG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	1398
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	4 cut(s)	37, 713, 899, 1320
BseCI	ATCGAT	1 cut(s)	975
BseDI	CCNNGG	2 cut(s)	786, 1148
BseGI	GGATG	8 cut(s)	280, 453, 547, 696, 721, 937, 1575, 1711
BseJI	GATNNNNATC	1 cut(s)	1398
BseLI	CCNNNNNNNGG	6 cut(s)	31, 260, 406, 904, 1270, 1424
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	5 cut(s)	246, 695, 804, 918, 1626
BseNI	ACTGG	1 cut(s)	1209
BseRI	GAGGAG	3 cut(s)	487, 526, 1627
BseX3I	CGGCCG	1 cut(s)	164
BseXI	GCAGC	5 cut(s)	49, 873, 895, 1450, 1643
BseYI	CCCAGC	1 cut(s)	665
Bsh1236I	CGCG	4 cut(s)	118, 123, 163, 191
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	35, 81, 166
BshNI	GGYRCC	2 cut(s)	263, 708
BshVI	ATCGAT	1 cut(s)	975
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	799, 1012
BsiHKCI	CYCGRG	3 cut(s)	625, 724, 1149
BsiSI	CCGG	6 cut(s)	12, 69, 127, 143, 167, 272
BslI	CCNNNNNNNGG	6 cut(s)	31, 260, 406, 904, 1270, 1424
BsmAI	GTCTC	2 cut(s)	420, 471
BsmI	GAATGC	3 cut(s)	202, 667, 1561
BsnI	GGCC	3 cut(s)	35, 81, 166
Bso31I	GGTCTC	1 cut(s)	471
BsoBI	CYCGRG	3 cut(s)	625, 724, 1149
Bsp119I	TTCGAA	2 cut(s)	518, 1128
Bsp1286I	GDGCHC	2 cut(s)	799, 1012
Bsp13I	TCCGGA	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	1361
Bsp143I	GATC	7 cut(s)	297, 369, 972, 1059, 1144, 1399, 1697
Bsp19I	CCATGG	1 cut(s)	786
BspANI	GGCC	3 cut(s)	35, 81, 166
BspCNI	CTCAG	5 cut(s)	247, 696, 805, 919, 1627
BspDI	ATCGAT	1 cut(s)	975
BspEI	TCCGGA	1 cut(s)	126
BspFNI	CGCG	4 cut(s)	118, 123, 163, 191
BspLI	GGNNCC	3 cut(s)	265, 710, 784
BspMAI	CTGCAG	1 cut(s)	891
BspPI	GGATC	4 cut(s)	377, 1139, 1394, 1705
BspQI	GCTCTTC	1 cut(s)	107
BspT104I	TTCGAA	2 cut(s)	518, 1128
BspT107I	GGYRCC	2 cut(s)	263, 708
BspTNI	GGTCTC	1 cut(s)	471
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	1361
BsrI	ACTGG	1 cut(s)	1209
BssECI	CCNNGG	2 cut(s)	786, 1148
BssMI	GATC	7 cut(s)	297, 369, 972, 1059, 1144, 1399, 1697
BssNAI	GTATAC	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	786
Bst1107I	GTATAC	1 cut(s)	615
Bst2UI	CCWGG	4 cut(s)	37, 713, 899, 1320
Bst4CI	ACNGT	5 cut(s)	376, 685, 757, 794, 1001
Bst6I	CTCTTC	4 cut(s)	107, 526, 1500, 1619
BstAUI	TGTACA	1 cut(s)	1361
BstBI	TTCGAA	2 cut(s)	518, 1128
BstC8I	GCNNGC	5 cut(s)	799, 833, 837, 1113, 1587
BstDEI	CTNAG	6 cut(s)	255, 494, 704, 813, 927, 1635
BstDSI	CCRYGG	1 cut(s)	786
BstENI	CCTNNNNNAGG	2 cut(s)	258, 1422
BstF5I	GGATG	8 cut(s)	280, 453, 547, 696, 721, 937, 1575, 1711
BstFNI	CGCG	4 cut(s)	118, 123, 163, 191
BstH2I	RGCGCY	2 cut(s)	45, 95
BstHHI	GCGC	5 cut(s)	44, 94, 120, 193, 311
BstKTI	GATC	7 cut(s)	300, 372, 975, 1062, 1147, 1402, 1700
BstMAI	GTCTC	2 cut(s)	420, 471
BstMBI	GATC	7 cut(s)	297, 369, 972, 1059, 1144, 1399, 1697
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 78, 185, 197, 277, 601, 1595, 1637
BstNI	CCWGG	4 cut(s)	37, 713, 899, 1320
BstNSI	RCATGY	1 cut(s)	1183
BstSCI	CCNGG	4 cut(s)	35, 711, 897, 1318
BstSFI	CTRYAG	1 cut(s)	887
BstUI	CGCG	4 cut(s)	118, 123, 163, 191
BstV1I	GCAGC	5 cut(s)	49, 873, 895, 1450, 1643
BstX2I	RGATCY	2 cut(s)	1399, 1697
BstYI	RGATCY	2 cut(s)	1399, 1697
BstZ17I	GTATAC	1 cut(s)	615
BstZI	CGGCCG	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	975
BsuI	GTATCC	1 cut(s)	1429
BsuRI	GGCC	3 cut(s)	35, 81, 166
BsuTUI	ATCGAT	1 cut(s)	975
BtgI	CCRYGG	1 cut(s)	786
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	8 cut(s)	280, 453, 547, 696, 721, 937, 1575, 1711
BtsIMutI	CAGTG	4 cut(s)	381, 641, 701, 1006
Cac8I	GCNNGC	5 cut(s)	799, 833, 837, 1113, 1587
CaiI	CAGNNNCTG	1 cut(s)	886
CfoI	GCGC	5 cut(s)	44, 94, 120, 193, 311
Cfr13I	GGNCC	2 cut(s)	80, 790
ClaI	ATCGAT	1 cut(s)	975
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	1362
CviAII	CATG	4 cut(s)	740, 787, 1180, 1253
CviQI	GTAC	1 cut(s)	1362
DdeI	CTNAG	6 cut(s)	255, 494, 704, 813, 927, 1635
DpnI	GATC	7 cut(s)	299, 371, 974, 1061, 1146, 1401, 1699
DpnII	GATC	7 cut(s)	297, 369, 972, 1059, 1144, 1399, 1697
DraIII	CACNNNGTG	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	164
EagI	CGGCCG	1 cut(s)	164
Eam1104I	CTCTTC	4 cut(s)	107, 526, 1500, 1619
EarI	CTCTTC	4 cut(s)	107, 526, 1500, 1619
EciI	GGCGGA	1 cut(s)	170
EclXI	CGGCCG	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	786
Eco147I	AGGCCT	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	790
Eco47III	AGCGCT	1 cut(s)	93
Eco52I	CGGCCG	1 cut(s)	164
Eco88I	CYCGRG	3 cut(s)	625, 724, 1149
EcoNI	CCTNNNNNAGG	2 cut(s)	258, 1422
EcoRI	GAATTC	3 cut(s)	394, 520, 565
EcoRII	CCWGG	4 cut(s)	35, 711, 897, 1318
EcoT14I	CCWWGG	1 cut(s)	786
EcoT22I	ATGCAT	1 cut(s)	1563
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	4 cut(s)	743, 790, 1183, 1256
FalI	AAGNNNNNCTT	2 cut(s)	1122, 1154
FatI	CATG	4 cut(s)	739, 786, 1179, 1252
FauI	CCCGC	2 cut(s)	772, 928
FbaI	TGATCA	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	614
FokI	GGATG	7 cut(s)	287, 460, 554, 703, 728, 944, 1582
FspBI	CTAG	9 cut(s)	312, 525, 579, 695, 809, 1289, 1311, 1578, 1599
GlaI	GCGC	5 cut(s)	43, 93, 119, 192, 310
GsaI	CCCAGC	1 cut(s)	669
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	2 cut(s)	45, 95
HaeIII	GGCC	3 cut(s)	35, 81, 166
HapII	CCGG	6 cut(s)	12, 69, 127, 143, 167, 272
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	5 cut(s)	44, 94, 120, 193, 311
Hin1II	CATG	4 cut(s)	743, 790, 1183, 1256
Hin6I	GCGC	5 cut(s)	42, 92, 118, 191, 309
HinP1I	GCGC	5 cut(s)	42, 92, 118, 191, 309
HindIII	AAGCTT	1 cut(s)	1083
HinfI	GANTC	6 cut(s)	158, 257, 490, 727, 1220, 1394
HpaII	CCGG	6 cut(s)	12, 69, 127, 143, 167, 272
HphI	GGTGA	4 cut(s)	227, 1165, 1253, 1391
Hpy166II	GTNNAC	5 cut(s)	584, 615, 1539, 1575, 1661
Hpy188I	TCNGA	9 cut(s)	88, 425, 564, 690, 846, 1239, 1390, 1399, 1524
Hpy188III	TCNNGA	6 cut(s)	127, 232, 970, 1098, 1339, 1484
Hpy8I	GTNNAC	5 cut(s)	584, 615, 1539, 1575, 1661
Hpy99I	CGWCG	4 cut(s)	50, 77, 80, 248
HpyCH4III	ACNGT	5 cut(s)	376, 685, 757, 794, 1001
HpyCH4IV	ACGT	4 cut(s)	27, 586, 851, 1439
HpyCH4V	TGCA	7 cut(s)	486, 767, 839, 889, 984, 1200, 1561
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 78, 185, 197, 277, 601, 1595, 1637
HpyF3I	CTNAG	6 cut(s)	255, 494, 704, 813, 927, 1635
HpySE526I	ACGT	4 cut(s)	27, 586, 851, 1439
Hsp92II	CATG	4 cut(s)	743, 790, 1183, 1256
HspAI	GCGC	5 cut(s)	42, 92, 118, 191, 309
Kpn2I	TCCGGA	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	7 cut(s)	297, 369, 972, 1059, 1144, 1399, 1697
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	7 cut(s)	9, 14, 39, 145, 361, 907, 1054
Lsp1109I	GCAGC	5 cut(s)	49, 873, 895, 1450, 1643
LweI	GCATC	3 cut(s)	681, 922, 1548
MaeI	CTAG	9 cut(s)	312, 525, 579, 695, 809, 1289, 1311, 1578, 1599
MaeII	ACGT	4 cut(s)	27, 586, 851, 1439
MaeIII	GTNAC	4 cut(s)	112, 571, 673, 742
MalI	GATC	7 cut(s)	299, 371, 974, 1061, 1146, 1401, 1699
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	7 cut(s)	297, 369, 972, 1059, 1144, 1399, 1697
MboII	GAAGA	7 cut(s)	94, 543, 854, 1142, 1229, 1517, 1636
MflI	RGATCY	2 cut(s)	1399, 1697
MhlI	GDGCHC	2 cut(s)	799, 1012
MluCI	AATT	8 cut(s)	208, 394, 505, 520, 565, 1044, 1488, 1666
MlyI	GAGTC	3 cut(s)	152, 266, 736
MmeI	TCCRAC	3 cut(s)	298, 327, 1430
Mph1103I	ATGCAT	1 cut(s)	1563
MroI	TCCGGA	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	2 cut(s)	1140, 1473
MslI	CAYNNNNRTG	3 cut(s)	714, 1076, 1266
MspA1I	CMGCKG	2 cut(s)	886, 1634
MspI	CCGG	6 cut(s)	12, 69, 127, 143, 167, 272
MspR9I	CCNGG	4 cut(s)	37, 713, 899, 1320
Mva1269I	GAATGC	3 cut(s)	202, 667, 1561
MvaI	CCWGG	4 cut(s)	37, 713, 899, 1320
MvnI	CGCG	4 cut(s)	118, 123, 163, 191
MwoI	GCNNNNNNNGC	8 cut(s)	41, 78, 185, 197, 277, 601, 1595, 1637
NcoI	CCATGG	1 cut(s)	786
NdeII	GATC	7 cut(s)	297, 369, 972, 1059, 1144, 1399, 1697
NlaIII	CATG	4 cut(s)	743, 790, 1183, 1256
NlaIV	GGNNCC	3 cut(s)	265, 710, 784
NmeAIII	GCCGAG	2 cut(s)	163, 292
NmuCI	GTSAC	2 cut(s)	112, 742
NsiI	ATGCAT	1 cut(s)	1563
NspI	RCATGY	1 cut(s)	1183
NspV	TTCGAA	2 cut(s)	518, 1128
PaeR7I	CTCGAG	2 cut(s)	625, 724
PceI	AGGCCT	1 cut(s)	35
PciI	ACATGT	1 cut(s)	1179
PciSI	GCTCTTC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	3 cut(s)	202, 667, 1561
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	490, 1220, 1394
PleI	GAGTC	3 cut(s)	152, 265, 735
PpsI	GAGTC	3 cut(s)	152, 265, 735
PscI	ACATGT	1 cut(s)	1179
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	4 cut(s)	35, 711, 897, 1318
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	4 cut(s)	35, 711, 897, 1318
PspN4I	GGNNCC	3 cut(s)	265, 710, 784
PspPI	GGNCC	2 cut(s)	80, 790
PspXI	VCTCGAGB	2 cut(s)	625, 724
PstI	CTGCAG	1 cut(s)	891
PstNI	CAGNNNCTG	1 cut(s)	886
PsuI	RGATCY	2 cut(s)	1399, 1697
PvuII	CAGCTG	2 cut(s)	886, 1634
RsaI	GTAC	1 cut(s)	1363
RsaNI	GTAC	1 cut(s)	1362
RseI	CAYNNNNRTG	3 cut(s)	714, 1076, 1266
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	1140, 1473
Sau3AI	GATC	7 cut(s)	297, 369, 972, 1059, 1144, 1399, 1697
Sau96I	GGNCC	2 cut(s)	80, 790
SchI	GAGTC	3 cut(s)	152, 266, 736
ScrFI	CCNGG	4 cut(s)	37, 713, 899, 1320
SduI	GDGCHC	2 cut(s)	799, 1012
SfaNI	GCATC	3 cut(s)	681, 922, 1548
SfcI	CTRYAG	1 cut(s)	887
Sfr274I	CTCGAG	2 cut(s)	625, 724
SfuI	TTCGAA	2 cut(s)	518, 1128
SinI	GGWCC	1 cut(s)	790
SlaI	CTCGAG	2 cut(s)	625, 724
SmiMI	CAYNNNNRTG	3 cut(s)	714, 1076, 1266
SmlI	CTYRAG	4 cut(s)	95, 625, 724, 866
SmoI	CTYRAG	4 cut(s)	95, 625, 724, 866
SpeI	ACTAGT	1 cut(s)	1577
Sse9I	AATT	8 cut(s)	208, 394, 505, 520, 565, 1044, 1488, 1666
SseBI	AGGCCT	1 cut(s)	35
SspMI	CTAG	9 cut(s)	312, 525, 579, 695, 809, 1289, 1311, 1578, 1599
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	35, 711, 897, 1318
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	5 cut(s)	376, 685, 757, 794, 1001
TaiI	ACGT	4 cut(s)	30, 589, 854, 1442
TaqI	TCGA	8 cut(s)	243, 518, 626, 725, 975, 1128, 1188, 1565
TasI	AATT	8 cut(s)	208, 394, 505, 520, 565, 1044, 1488, 1666
TatI	WGTACW	1 cut(s)	1361
TauI	GCSGC	7 cut(s)	57, 123, 166, 179, 191, 410, 595
TfiI	GAWTC	3 cut(s)	490, 1220, 1394
Tru1I	TTAA	2 cut(s)	1140, 1473
Tru9I	TTAA	2 cut(s)	1140, 1473
TscAI	CASTG	4 cut(s)	381, 648, 708, 1006
TseFI	GTSAC	2 cut(s)	112, 742
TseI	GCWGC	5 cut(s)	62, 883, 886, 1463, 1631
Tsp45I	GTSAC	2 cut(s)	112, 742
TspDTI	ATGAA	7 cut(s)	662, 674, 1041, 1094, 1259, 1359, 1437
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	4 cut(s)	381, 648, 708, 1006
VpaK11BI	GGWCC	1 cut(s)	790
XagI	CCTNNNNNAGG	2 cut(s)	258, 1422
XapI	RAATTY	4 cut(s)	394, 505, 520, 565
XceI	RCATGY	1 cut(s)	1183
XhoI	CTCGAG	2 cut(s)	625, 724
XmiI	GTMKAC	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	9 cut(s)	312, 525, 579, 695, 809, 1289, 1311, 1578, 1599
Zsp2I	ATGCAT	1 cut(s)	1563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.