Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017189

Physical Location & Seq

Genomic Coordinates Forward (+)

14454002 .. 14455471

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG168000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGCCTGAGTCAGGTGCCGAGCCGGATGTGCTTACTTATAATGTGATGATCAAGCTCTGCGCTAGAGTTGGAAGGAAGGACTTGCTTGTTTTTGTGTTGGAGAGGATTTTGGAGCAGGGGATCACAGTGTGTATGACTACATTGAATTCCCTCGTTGCGGCTTATGTTGGTTTCGGAGACTTGGAAACTGCGGAGAGGATGGTTCAGGCAATGAGGGAAGGGAGGAGAGACCTCTGCAAGATTCTAAGGGAGGCAAATTTGAGGAGTTCGAATTCTAGTGGAAGAGATGGGGATGTGTTTGAGAGGTTGCTTCCGAATTCAGTTACAGCTAGTGAACGTGAGCCGCCATTGTTGCCAAAAGCGTATACTTCTAACTCGAGGATTTACACTACACTGATGAAGGGTTATATGAATGCTGGGCGTGTTACTGACACGGTTCGGATGCTAGAGGCACTGAGGCACCAGGATGATAGCTCGAGTCAGCCTGACCATGTGACATATACAACTGTTATTTCTGCATTTGTGAAGGCGGGTTCCATGGACCGTGCTCGCAGGGTTCTAGCTGAGATGACGAGAGTTGGCGTGCCTGCAAATCGGATAACGTATAACATTCTTCTCAAGGGTTATTGTCAGCAGCTGCAGATAGACCAGGCAAAGGAGCTGGTTAGAGAGATGACTGAGGATGCGGGGATTGAGCCTGATGTGGTTTCGTATAACATCTTGATCGATGGGTGCATACAGGTTGATGACAGTGCTGGTGCTCTTGCTTTTTTCAATGAAATGAGAGCAAAAGGAATTGCTCCCACCAAGATCAGCTACACCACTTTGATGAAAGCTTTTGCCTTGTCTGGACAGCCAAAGCTGGCTAACAAGGTATTCGAAGAAATGCTTAACGATCCTCGGGTGAAGGCTGATTTGGTAGCTTGGAACATGTTGGTCGAAGGGTATTGCAGACTGGGGTTGGTTGAAGAATCCAAGAAAATCATTCAGAGAATGAAAGAGCATGGGTTTCACCCTGATGTGGCTACTTATGGTAGCCTAGCTAATGGTATAGCATTGGCTAGAAAACCAGGAGAGGCACTTTTGCTCTGGAATGAAGTGAAGGACAGATGTACAGCGAAAAAGGAAGGTGAAAAGTCTGATGATTCAGATCCTCCAACATTGAAACCTGATGAAGGGCTATTGGATACGTTGGCTGATATTTGTGTTAGGGCTGCTTTCTTTAAGAAGGCTCTGGAAATTGTCGCTTGTATGGAAGAGAATGGTATTCCTCCGAACAAGACCAAGTTCACTAAAATCTATGTGGAGATGCATTCGAGGATGTTTACTAGTAAGCACGCCTCACAGGCTAGGCAGGACAGGAGGAGTGAAAGGAAGAGAGCAGCTGAGGCTTTCAAGTTTTGGTTGGGTTTACCCAATTCTTATTATGGGAGTGAATGGAGGTTAGGATCTTTGGATGGAGATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

489

Amino Acids

54.68

Weight (kDa)

7.52

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	3 - 57	8.1e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	139 - 260	1.3e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	146 - 247	1.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	161 - 191	1.3e-07	PPR repeat
PPR_3	PF13812	161 - 209	2.4e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	162 - 211	4.6e-15	PPR repeat family
PPR	PF01535	165 - 195	4.4e-06	PPR repeat
PPR_1	PF12854	194 - 226	2.8e-08	PPR repeat
PPR_2	PF13041	198 - 246	1.7e-14	PPR repeat family
PPR_3	PF13812	221 - 280	2.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	230 - 262	8.9e-06	PPR repeat
PPR_2	PF13041	233 - 281	2.6e-14	PPR repeat family
PPR_2	PF13041	305 - 351	1.2e-10	PPR repeat family
PPR	PF01535	307 - 337	2.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09650
fragaria_vesca	FvH4_6g15290
prunus_persica	Prupe.6G241600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468701
rosa_laevigata	RLG00000024415
rosa_multiflora	Rmu_sc0011538.1_g000002 Rmu_sc0028512.1_g000001 Rmu_sc0033138.1_g000003
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145300 Rh3BG168000 Rh3DG166600
rosa_wichuraiana	Rw3G013690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	14, 459
AccI	GTMKAC	1 cut(s)	365
AciI	CCGC	5 cut(s)	158, 191, 344, 530, 686
AclWI	GGATC	4 cut(s)	128, 890, 1145, 1456
AcsI	RAATTY	4 cut(s)	145, 256, 271, 316
AdeI	CACNNNGTG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	1114
AfiI	CCNNNNNNNGG	5 cut(s)	11, 157, 655, 1021, 1175
AflIII	ACRYGT	1 cut(s)	930
AgsI	TTSAA	5 cut(s)	145, 775, 968, 1165, 1396
AhlI	ACTAGT	1 cut(s)	1328
AjnI	CCWGG	3 cut(s)	462, 648, 1069
AjuI	GAANNNNNNNTTGG	2 cut(s)	899, 931
Alw21I	GWGCWC	2 cut(s)	550, 763
Alw26I	GTCTC	2 cut(s)	171, 222
AlwI	GGATC	4 cut(s)	128, 890, 1145, 1456
AlwNI	CAGNNNCTG	1 cut(s)	637
Ama87I	CYCGRG	3 cut(s)	376, 475, 900
ApeKI	GCWGC	4 cut(s)	634, 637, 1214, 1382
ApoI	RAATTY	4 cut(s)	145, 256, 271, 316
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	3 cut(s)	916, 1004, 1142
AsuII	TTCGAA	2 cut(s)	269, 879
AvaI	CYCGRG	3 cut(s)	376, 475, 900
AvaII	GGWCC	1 cut(s)	541
BanI	GGYRCC	2 cut(s)	14, 459
Bbv12I	GWGCWC	2 cut(s)	550, 763
BbvCI	CCTCAGC	1 cut(s)	1386
BbvI	GCAGC	4 cut(s)	624, 646, 1201, 1394
BccI	CCATC	4 cut(s)	193, 281, 722, 1451
BciT130I	CCWGG	3 cut(s)	464, 650, 1071
BciVI	GTATCC	1 cut(s)	1180
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	2 cut(s)	171, 222
BcuI	ACTAGT	1 cut(s)	1328
BfaI	CTAG	9 cut(s)	63, 276, 330, 446, 560, 1040, 1062, 1329, 1350
BfmI	CTRYAG	1 cut(s)	638
BfuI	GTATCC	1 cut(s)	1180
BglI	GCCNNNNNGGC	1 cut(s)	1346
BisI	GCNGC	6 cut(s)	159, 344, 635, 638, 1215, 1383
BlsI	GCNGC	6 cut(s)	160, 345, 636, 639, 1216, 1384
Bme1390I	CCNGG	3 cut(s)	464, 650, 1071
Bme18I	GGWCC	1 cut(s)	541
BmeT110I	CYCGRG	3 cut(s)	376, 475, 900
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	3 cut(s)	16, 461, 535
BmrFI	CCNGG	3 cut(s)	464, 650, 1071
BmrI	ACTGGG	1 cut(s)	965
BmsI	GCATC	3 cut(s)	432, 673, 1299
BmuI	ACTGGG	1 cut(s)	965
Bpu10I	CCTNAGC	1 cut(s)	1386
Bpu14I	TTCGAA	2 cut(s)	269, 879
BpuEI	CTTGAG	1 cut(s)	602
Bsa29I	ATCGAT	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	1149
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	537, 899
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 157, 655, 1021, 1175
Bse1I	ACTGG	1 cut(s)	960
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	1149
BseBI	CCWGG	3 cut(s)	464, 650, 1071
BseCI	ATCGAT	1 cut(s)	726
BseDI	CCNNGG	2 cut(s)	537, 899
BseGI	GGATG	8 cut(s)	31, 204, 298, 447, 472, 688, 1326, 1462
BseJI	GATNNNNATC	1 cut(s)	1149
BseLI	CCNNNNNNNGG	5 cut(s)	11, 157, 655, 1021, 1175
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	4 cut(s)	446, 555, 669, 1377
BseNI	ACTGG	1 cut(s)	960
BseRI	GAGGAG	3 cut(s)	238, 277, 1378
BseXI	GCAGC	4 cut(s)	624, 646, 1201, 1394
BseYI	CCCAGC	1 cut(s)	416
BshNI	GGYRCC	2 cut(s)	14, 459
BshVI	ATCGAT	1 cut(s)	726
BsiHKAI	GWGCWC	2 cut(s)	550, 763
BsiHKCI	CYCGRG	3 cut(s)	376, 475, 900
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	5 cut(s)	11, 157, 655, 1021, 1175
BsmAI	GTCTC	2 cut(s)	171, 222
BsmI	GAATGC	2 cut(s)	418, 1312
Bso31I	GGTCTC	1 cut(s)	222
BsoBI	CYCGRG	3 cut(s)	376, 475, 900
Bsp119I	TTCGAA	2 cut(s)	269, 879
Bsp1286I	GDGCHC	2 cut(s)	550, 763
Bsp1407I	TGTACA	1 cut(s)	1112
Bsp143I	GATC	7 cut(s)	48, 120, 723, 810, 895, 1150, 1448
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	5 cut(s)	158, 191, 344, 530, 686
BspCNI	CTCAG	4 cut(s)	447, 556, 670, 1378
BspDI	ATCGAT	1 cut(s)	726
BspLI	GGNNCC	3 cut(s)	16, 461, 535
BspMAI	CTGCAG	1 cut(s)	642
BspPI	GGATC	4 cut(s)	128, 890, 1145, 1456
BspT104I	TTCGAA	2 cut(s)	269, 879
BspT107I	GGYRCC	2 cut(s)	14, 459
BspTNI	GGTCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	216
BsrGI	TGTACA	1 cut(s)	1112
BsrI	ACTGG	1 cut(s)	960
BssECI	CCNNGG	2 cut(s)	537, 899
BssMI	GATC	7 cut(s)	48, 120, 723, 810, 895, 1150, 1448
BssNAI	GTATAC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	537
Bst1107I	GTATAC	1 cut(s)	366
Bst2UI	CCWGG	3 cut(s)	464, 650, 1071
Bst4CI	ACNGT	5 cut(s)	127, 436, 508, 545, 752
Bst6I	CTCTTC	3 cut(s)	277, 1251, 1370
BstAUI	TGTACA	1 cut(s)	1112
BstBI	TTCGAA	2 cut(s)	269, 879
BstC8I	GCNNGC	5 cut(s)	550, 584, 588, 864, 1338
BstDEI	CTNAG	6 cut(s)	6, 245, 455, 564, 678, 1386
BstDSI	CCRYGG	1 cut(s)	537
BstENI	CCTNNNNNAGG	2 cut(s)	9, 1173
BstF5I	GGATG	8 cut(s)	31, 204, 298, 447, 472, 688, 1326, 1462
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	7 cut(s)	51, 123, 726, 813, 898, 1153, 1451
BstMAI	GTCTC	2 cut(s)	171, 222
BstMBI	GATC	7 cut(s)	48, 120, 723, 810, 895, 1150, 1448
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 352, 1346, 1388
BstNI	CCWGG	3 cut(s)	464, 650, 1071
BstNSI	RCATGY	1 cut(s)	934
BstSCI	CCNGG	3 cut(s)	462, 648, 1069
BstSFI	CTRYAG	1 cut(s)	638
BstV1I	GCAGC	4 cut(s)	624, 646, 1201, 1394
BstX2I	RGATCY	2 cut(s)	1150, 1448
BstYI	RGATCY	2 cut(s)	1150, 1448
BstZ17I	GTATAC	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	1180
BsuTUI	ATCGAT	1 cut(s)	726
BtgI	CCRYGG	1 cut(s)	537
BtsCI	GGATG	8 cut(s)	31, 204, 298, 447, 472, 688, 1326, 1462
BtsIMutI	CAGTG	4 cut(s)	132, 392, 452, 757
Cac8I	GCNNGC	5 cut(s)	550, 584, 588, 864, 1338
CaiI	CAGNNNCTG	1 cut(s)	637
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	541
ClaI	ATCGAT	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	1113
CviAII	CATG	4 cut(s)	491, 538, 931, 1004
CviQI	GTAC	1 cut(s)	1113
DdeI	CTNAG	6 cut(s)	6, 245, 455, 564, 678, 1386
DpnI	GATC	7 cut(s)	50, 122, 725, 812, 897, 1152, 1450
DpnII	GATC	7 cut(s)	48, 120, 723, 810, 895, 1150, 1448
DraIII	CACNNNGTG	1 cut(s)	129
Eam1104I	CTCTTC	3 cut(s)	277, 1251, 1370
EarI	CTCTTC	3 cut(s)	277, 1251, 1370
Eco130I	CCWWGG	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	541
Eco88I	CYCGRG	3 cut(s)	376, 475, 900
EcoNI	CCTNNNNNAGG	2 cut(s)	9, 1173
EcoRI	GAATTC	3 cut(s)	145, 271, 316
EcoRII	CCWGG	3 cut(s)	462, 648, 1069
EcoT14I	CCWWGG	1 cut(s)	537
EcoT22I	ATGCAT	1 cut(s)	1314
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	4 cut(s)	494, 541, 934, 1007
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FatI	CATG	4 cut(s)	490, 537, 930, 1003
FauI	CCCGC	2 cut(s)	523, 679
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	6 cut(s)	159, 344, 635, 638, 1215, 1383
FokI	GGATG	7 cut(s)	38, 211, 305, 454, 479, 695, 1333
Fsp4HI	GCNGC	6 cut(s)	159, 344, 635, 638, 1215, 1383
FspBI	CTAG	9 cut(s)	63, 276, 330, 446, 560, 1040, 1062, 1329, 1350
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	6 cut(s)	159, 344, 635, 638, 1215, 1383
GsaI	CCCAGC	1 cut(s)	420
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	494, 541, 934, 1007
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	5 cut(s)	8, 241, 478, 971, 1145
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	3 cut(s)	916, 1004, 1142
Hpy166II	GTNNAC	5 cut(s)	335, 366, 1290, 1326, 1412
Hpy188I	TCNGA	8 cut(s)	176, 315, 441, 597, 990, 1141, 1150, 1275
Hpy188III	TCNNGA	4 cut(s)	721, 849, 1090, 1235
Hpy8I	GTNNAC	5 cut(s)	335, 366, 1290, 1326, 1412
HpyCH4III	ACNGT	5 cut(s)	127, 436, 508, 545, 752
HpyCH4IV	ACGT	3 cut(s)	337, 602, 1190
HpyCH4V	TGCA	7 cut(s)	237, 518, 590, 640, 735, 951, 1312
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 352, 1346, 1388
HpyF3I	CTNAG	6 cut(s)	6, 245, 455, 564, 678, 1386
HpySE526I	ACGT	3 cut(s)	337, 602, 1190
Hsp92II	CATG	4 cut(s)	494, 541, 934, 1007
HspAI	GCGC	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	7 cut(s)	48, 120, 723, 810, 895, 1150, 1448
LmnI	GCTCC	3 cut(s)	112, 658, 805
Lsp1109I	GCAGC	4 cut(s)	624, 646, 1201, 1394
LweI	GCATC	3 cut(s)	432, 673, 1299
MaeI	CTAG	9 cut(s)	63, 276, 330, 446, 560, 1040, 1062, 1329, 1350
MaeII	ACGT	3 cut(s)	337, 602, 1190
MaeIII	GTNAC	3 cut(s)	322, 424, 493
MalI	GATC	7 cut(s)	50, 122, 725, 812, 897, 1152, 1450
MboI	GATC	7 cut(s)	48, 120, 723, 810, 895, 1150, 1448
MboII	GAAGA	6 cut(s)	294, 605, 893, 980, 1268, 1387
MflI	RGATCY	2 cut(s)	1150, 1448
MhlI	GDGCHC	2 cut(s)	550, 763
MluCI	AATT	7 cut(s)	145, 256, 271, 316, 795, 1239, 1417
MlyI	GAGTC	2 cut(s)	17, 487
MmeI	TCCRAC	3 cut(s)	49, 78, 1181
Mph1103I	ATGCAT	1 cut(s)	1314
MseI	TTAA	2 cut(s)	891, 1224
MslI	CAYNNNNRTG	3 cut(s)	465, 827, 1017
MspA1I	CMGCKG	2 cut(s)	637, 1385
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	3 cut(s)	464, 650, 1071
Mva1269I	GAATGC	2 cut(s)	418, 1312
MvaI	CCWGG	3 cut(s)	464, 650, 1071
MwoI	GCNNNNNNNGC	4 cut(s)	28, 352, 1346, 1388
NcoI	CCATGG	1 cut(s)	537
NdeII	GATC	7 cut(s)	48, 120, 723, 810, 895, 1150, 1448
NlaIII	CATG	4 cut(s)	494, 541, 934, 1007
NlaIV	GGNNCC	3 cut(s)	16, 461, 535
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	1314
NspI	RCATGY	1 cut(s)	934
NspV	TTCGAA	2 cut(s)	269, 879
PaeR7I	CTCGAG	2 cut(s)	376, 475
PciI	ACATGT	1 cut(s)	930
PctI	GAATGC	2 cut(s)	418, 1312
PfeI	GAWTC	3 cut(s)	241, 971, 1145
PkrI	GCNGC	6 cut(s)	160, 345, 636, 639, 1216, 1384
PleI	GAGTC	2 cut(s)	16, 486
PpsI	GAGTC	2 cut(s)	16, 486
PscI	ACATGT	1 cut(s)	930
PsiI	TTATAA	1 cut(s)	39
Psp6I	CCWGG	3 cut(s)	462, 648, 1069
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	3 cut(s)	462, 648, 1069
PspN4I	GGNNCC	3 cut(s)	16, 461, 535
PspPI	GGNCC	1 cut(s)	541
PspXI	VCTCGAGB	2 cut(s)	376, 475
PstI	CTGCAG	1 cut(s)	642
PstNI	CAGNNNCTG	1 cut(s)	637
PsuI	RGATCY	2 cut(s)	1150, 1448
PvuII	CAGCTG	2 cut(s)	637, 1385
RsaI	GTAC	1 cut(s)	1114
RsaNI	GTAC	1 cut(s)	1113
RseI	CAYNNNNRTG	3 cut(s)	465, 827, 1017
SaqAI	TTAA	2 cut(s)	891, 1224
SatI	GCNGC	6 cut(s)	159, 344, 635, 638, 1215, 1383
Sau3AI	GATC	7 cut(s)	48, 120, 723, 810, 895, 1150, 1448
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	2 cut(s)	17, 487
ScrFI	CCNGG	3 cut(s)	464, 650, 1071
SduI	GDGCHC	2 cut(s)	550, 763
SfaNI	GCATC	3 cut(s)	432, 673, 1299
SfcI	CTRYAG	1 cut(s)	638
Sfr274I	CTCGAG	2 cut(s)	376, 475
SfuI	TTCGAA	2 cut(s)	269, 879
SinI	GGWCC	1 cut(s)	541
SlaI	CTCGAG	2 cut(s)	376, 475
SmiMI	CAYNNNNRTG	3 cut(s)	465, 827, 1017
SmlI	CTYRAG	3 cut(s)	376, 475, 617
SmoI	CTYRAG	3 cut(s)	376, 475, 617
SpeI	ACTAGT	1 cut(s)	1328
Sse9I	AATT	7 cut(s)	145, 256, 271, 316, 795, 1239, 1417
SsiI	CCGC	5 cut(s)	158, 191, 344, 530, 686
SspMI	CTAG	9 cut(s)	63, 276, 330, 446, 560, 1040, 1062, 1329, 1350
StyD4I	CCNGG	3 cut(s)	462, 648, 1069
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	5 cut(s)	127, 436, 508, 545, 752
TaiI	ACGT	3 cut(s)	340, 605, 1193
TaqI	TCGA	7 cut(s)	269, 377, 476, 726, 879, 939, 1316
TasI	AATT	7 cut(s)	145, 256, 271, 316, 795, 1239, 1417
TatI	WGTACW	1 cut(s)	1112
TauI	GCSGC	2 cut(s)	161, 346
TfiI	GAWTC	3 cut(s)	241, 971, 1145
Tru1I	TTAA	2 cut(s)	891, 1224
Tru9I	TTAA	2 cut(s)	891, 1224
TscAI	CASTG	4 cut(s)	132, 399, 459, 757
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	4 cut(s)	634, 637, 1214, 1382
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	7 cut(s)	413, 425, 792, 845, 1010, 1110, 1188
TspRI	CASTG	4 cut(s)	132, 399, 459, 757
VpaK11BI	GGWCC	1 cut(s)	541
XagI	CCTNNNNNAGG	2 cut(s)	9, 1173
XapI	RAATTY	4 cut(s)	145, 256, 271, 316
XceI	RCATGY	1 cut(s)	934
XhoI	CTCGAG	2 cut(s)	376, 475
XmiI	GTMKAC	1 cut(s)	365
XspI	CTAG	9 cut(s)	63, 276, 330, 446, 560, 1040, 1062, 1329, 1350
Zsp2I	ATGCAT	1 cut(s)	1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.