Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033138.1

Orthogroup ID

OG0017189

Physical Location & Seq

Genomic Coordinates Forward (+)

7772 .. 10000

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033138.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2229 bp

atgaacctcaaaccacctccaccatcttcaccattacccaccaattcaaacccactccctctaacccacaccctcactatccactgggtctctccccctccttatccctcctccatttccaaacccacgcgcccatttcgcctccacgccaccgccgccaaccccgccaacccagccgctgacttaactctcacaaccgccgacgacaaccctccaatatctaatgaagaccagaagcttctaatcctcctccgccagagaaaaactgaagaggcttggattctctacacccaatcctcccgcctccccaatcccacttgcctcagccgcttgctctcccagctgtcctaccagaacactcgcaccagcctcacgcgcgcccagtccatcatcacgcgcctccgcaatgagcgccagctccgccacctcgacgccaactccctcggcctcctcgccgtcgccgcctccaaggccggccagacccgctacgccacctccatcgtcaagtccatgctccgctccggcttcctcccccacgtcaaggcctggagcaccgtcgtcagccgcctcgctgcctccggcgacgacggcccttccgaagcgctcaagctcttctactcggtcacgcgccgcgtccagaggttcgccgagccggaactggtggcggactcgcggccggacacggcggcgttcaatgccgcgctgaatgcttgtgctaatttgggtgatacagataggttcttgaagctgttcgacgaaatgcctgagtcaggtgccgagccggatgtgcttacttataatgtgatgatcaagctctgcgctagagttggaaggaaggacttgcttgtttttgtgttggagaggattttggagcaggggatcacagtgtgtatgactacattgaattccctcgttgcggcttatgttggtttcggagacttggaaactgcggagaggatggttcaggcaatgagggaagggaggagagacctctgcaagattctaagggaggcaaatttgaggagttcgaattctagtggaagagatggggatgtgtttgagaggttgcttccaaattcagttacagctagtgaacgtgagccgccattgttgccgaaagcctatacttctaactctaggatttacactacactgatgaagggttatatgaatgctgggcgtgttactgacacggttcggatgctagaggcactgaggcaccaggatgatagctcgagtcagcctgaccatgtgacatatacgactgttatttctgcatttgtgaaggcgggttccatggaccgtgctcgcagggttctagctgagatgacgagagttggcgtgcctgcaaatcggataacgtataacattcttctcaagggttattgtcagcagctgcagatagaccaggcaaaggagctggttagagagatgactgaggatgcggggattgagcctgatgtggtttcgtataacatcttgatcgatgggtgcatacaggttgatgacagtgctggtgctcttgcttttttcaatgaaatgagagcaaaaggaattgctcccaccaagatcagctacaccactttgatgaaagcttttgccttgtctggacagccaaagctggctaacaaggtattcgaagaaatgctcaacgatcctcgggtcaaggctgatttggtagcttggaacatgttggtcgaagggtattgcagactggggttggttgaagaatccaagaaaatcattcagagaatgaaagagcatgggtttcaccctgatgtggctacttatggtagcctagctaatgggatagcattggccagaaaaccgggagaggcacttttgctttggaatgaagtgaaggacagatgtacagcgaaaaaggaaggtgaaaaatctgatgattcagatcctccaacattgaaacctgatgaagggcttttggatactttggctgatatttgtgttagggctgctttcttcaagaaggctctagaaattgtcgcttgtatggaagagaatgggattcctccgaacaagaccaagttcactaaaatctatgtggagatgcattcgaggatgttttctagtaagcacgcctcacaagctaggcaggacaggaggagtgaaaggaagagagcagctgaggctttcaagttttggttgggtttacccaattcttattatgggagtgaatggaggttaggatctttggacggagataactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

742

Amino Acids

82.5

Weight (kDa)

8.88

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09650
fragaria_vesca	FvH4_6g15290
prunus_persica	Prupe.6G241600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468701
rosa_laevigata	RLG00000024415
rosa_multiflora	Rmu_sc0011538.1_g000002 Rmu_sc0028512.1_g000001 Rmu_sc0033138.1_g000003
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145300 Rh3BG168000 Rh3DG166600
rosa_wichuraiana	Rw3G013690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AccB1I	GGYRCC	2 cut(s)	773, 1218
AccBSI	CCGCTC	1 cut(s)	519
AccII	CGCG	8 cut(s)	130, 376, 378, 397, 628, 633, 673, 701
AclWI	GGATC	4 cut(s)	887, 1649, 1904, 2215
AcoI	YGGCCR	3 cut(s)	475, 674, 1818
AcsI	RAATTY	4 cut(s)	904, 1015, 1030, 1075
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	432
AdeI	CACNNNGTG	1 cut(s)	888
AfaI	GTAC	1 cut(s)	1873
AfeI	AGCGCT	1 cut(s)	603
AfiI	CCNNNNNNNGG	6 cut(s)	541, 770, 916, 1414, 1780, 1934
AflIII	ACRYGT	1 cut(s)	1689
AgsI	TTSAA	9 cut(s)	48, 694, 745, 904, 1534, 1727, 1924, 1984, 2155
AjiI	CACGTC	1 cut(s)	538
AjnI	CCWGG	3 cut(s)	545, 1221, 1407
Alw21I	GWGCWC	3 cut(s)	554, 1309, 1522
Alw26I	GTCTC	3 cut(s)	94, 930, 981
AlwI	GGATC	4 cut(s)	887, 1649, 1904, 2215
AlwNI	CAGNNNCTG	2 cut(s)	179, 1396
Ama87I	CYCGRG	2 cut(s)	1234, 1659
Aor51HI	AGCGCT	1 cut(s)	603
AoxI	GGCC	7 cut(s)	445, 471, 475, 543, 589, 674, 1818
ApeKI	GCWGC	5 cut(s)	572, 1393, 1396, 1973, 2141
ApoI	RAATTY	4 cut(s)	904, 1015, 1030, 1075
Asp700I	GAANNNNTTC	1 cut(s)	749
AspLEI	GCGC	9 cut(s)	132, 378, 380, 399, 414, 604, 630, 703, 821
AspS9I	GGNCC	2 cut(s)	590, 1300
AsuC2I	CCSGG	1 cut(s)	1830
AsuHPI	GGTGA	4 cut(s)	21, 737, 1763, 1901
AsuII	TTCGAA	2 cut(s)	1028, 1638
AvaI	CYCGRG	2 cut(s)	1234, 1659
AvaII	GGWCC	1 cut(s)	1300
BalI	TGGCCA	1 cut(s)	1820
BanI	GGYRCC	2 cut(s)	773, 1218
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	3 cut(s)	554, 1309, 1522
BbvCI	CCTCAGC	2 cut(s)	323, 2145
BbvI	GCAGC	5 cut(s)	559, 1383, 1405, 1960, 2153
BccI	CCATC	6 cut(s)	31, 395, 506, 952, 1040, 1481
BceAI	ACGGC	3 cut(s)	440, 604, 699
BciT130I	CCWGG	3 cut(s)	547, 1223, 1409
BciVI	GTATCC	1 cut(s)	1939
BclI	TGATCA	1 cut(s)	807
BcnI	CCSGG	1 cut(s)	1830
BcoDI	GTCTC	3 cut(s)	94, 930, 981
BfmI	CTRYAG	1 cut(s)	1397
BfoI	RGCGCY	2 cut(s)	415, 605
BfuI	GTATCC	1 cut(s)	1939
BglI	GCCNNNNNGGC	1 cut(s)	470
Bme1390I	CCNGG	4 cut(s)	547, 1223, 1409, 1830
Bme18I	GGWCC	1 cut(s)	1300
BmeT110I	CYCGRG	2 cut(s)	1234, 1659
BmgBI	CACGTC	1 cut(s)	538
BmgT120I	GGNCC	2 cut(s)	590, 1300
BmiI	GGNNCC	3 cut(s)	775, 1220, 1294
BmrFI	CCNGG	4 cut(s)	547, 1223, 1409, 1830
BmrI	ACTGGG	3 cut(s)	94, 376, 1724
BmsI	GCATC	3 cut(s)	1191, 1432, 2058
BmuI	ACTGGG	3 cut(s)	94, 376, 1724
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	568
Bpu10I	CCTNAGC	2 cut(s)	323, 2145
Bpu14I	TTCGAA	2 cut(s)	1028, 1638
BpuEI	CTTGAG	2 cut(s)	590, 1361
BpuMI	CCSGG	1 cut(s)	1830
Bsa29I	ATCGAT	1 cut(s)	1485
BsaBI	GATNNNNATC	1 cut(s)	1908
BsaHI	GRCGYC	1 cut(s)	432
BsaI	GGTCTC	2 cut(s)	94, 981
BsaJI	CCNNGG	4 cut(s)	442, 468, 1296, 1658
BsaXI	ACNNNNNCTCC	4 cut(s)	422, 452, 479, 509
Bsc4I	CCNNNNNNNGG	6 cut(s)	541, 770, 916, 1414, 1780, 1934
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	4 cut(s)	89, 382, 663, 1719
Bse3DI	GCAATG	2 cut(s)	412, 975
Bse8I	GATNNNNATC	1 cut(s)	1908
BseBI	CCWGG	3 cut(s)	547, 1223, 1409
BseCI	ATCGAT	1 cut(s)	1485
BseDI	CCNNGG	4 cut(s)	442, 468, 1296, 1658
BseGI	GGATG	7 cut(s)	790, 963, 1057, 1206, 1231, 1447, 2085
BseJI	GATNNNNATC	1 cut(s)	1908
BseLI	CCNNNNNNNGG	6 cut(s)	541, 770, 916, 1414, 1780, 1934
BseMI	GCAATG	2 cut(s)	412, 975
BseMII	CTCAG	6 cut(s)	337, 756, 1205, 1314, 1428, 2136
BseNI	ACTGG	4 cut(s)	89, 382, 663, 1719
BsePI	GCGCGC	1 cut(s)	376
BseRI	GAGGAG	6 cut(s)	100, 239, 440, 997, 1036, 2137
BseX3I	CGGCCG	1 cut(s)	674
BseXI	GCAGC	5 cut(s)	559, 1383, 1405, 1960, 2153
BseYI	CCCAGC	3 cut(s)	172, 339, 1175
Bsh1236I	CGCG	8 cut(s)	130, 376, 378, 397, 628, 633, 673, 701
Bsh1285I	CGRYCG	1 cut(s)	677
BshFI	GGCC	7 cut(s)	447, 473, 477, 545, 591, 676, 1820
BshNI	GGYRCC	2 cut(s)	773, 1218
BshVI	ATCGAT	1 cut(s)	1485
BsiEI	CGRYCG	1 cut(s)	677
BsiHKAI	GWGCWC	3 cut(s)	554, 1309, 1522
BsiHKCI	CYCGRG	2 cut(s)	1234, 1659
BsiSI	CCGG	7 cut(s)	474, 522, 579, 653, 677, 782, 1829
BslI	CCNNNNNNNGG	6 cut(s)	541, 770, 916, 1414, 1780, 1934
BsmAI	GTCTC	3 cut(s)	94, 930, 981
BsmI	GAATGC	3 cut(s)	712, 1177, 2071
BsnI	GGCC	7 cut(s)	447, 473, 477, 545, 591, 676, 1820
Bso31I	GGTCTC	2 cut(s)	94, 981
BsoBI	CYCGRG	2 cut(s)	1234, 1659
Bsp119I	TTCGAA	2 cut(s)	1028, 1638
Bsp1286I	GDGCHC	3 cut(s)	554, 1309, 1522
Bsp1407I	TGTACA	1 cut(s)	1871
Bsp143I	GATC	7 cut(s)	807, 879, 1482, 1569, 1654, 1909, 2207
Bsp19I	CCATGG	1 cut(s)	1296
BspANI	GGCC	7 cut(s)	447, 473, 477, 545, 591, 676, 1820
BspCNI	CTCAG	6 cut(s)	336, 757, 1206, 1315, 1429, 2137
BspDI	ATCGAT	1 cut(s)	1485
BspFNI	CGCG	8 cut(s)	130, 376, 378, 397, 628, 633, 673, 701
BspLI	GGNNCC	3 cut(s)	775, 1220, 1294
BspMAI	CTGCAG	1 cut(s)	1401
BspPI	GGATC	4 cut(s)	887, 1649, 1904, 2215
BspQI	GCTCTTC	1 cut(s)	617
BspT104I	TTCGAA	2 cut(s)	1028, 1638
BspT107I	GGYRCC	2 cut(s)	773, 1218
BspTNI	GGTCTC	2 cut(s)	94, 981
BsrBI	CCGCTC	1 cut(s)	519
BsrDI	GCAATG	2 cut(s)	412, 975
BsrFI	RCCGGY	1 cut(s)	473
BsrGI	TGTACA	1 cut(s)	1871
BsrI	ACTGG	4 cut(s)	89, 382, 663, 1719
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	4 cut(s)	442, 468, 1296, 1658
BssHII	GCGCGC	1 cut(s)	376
BssMI	GATC	7 cut(s)	807, 879, 1482, 1569, 1654, 1909, 2207
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	468, 1296
Bst2UI	CCWGG	3 cut(s)	547, 1223, 1409
Bst4CI	ACNGT	6 cut(s)	556, 886, 1195, 1267, 1304, 1511
Bst6I	CTCTTC	5 cut(s)	264, 617, 1036, 2010, 2129
BstACI	GRCGYC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	1871
BstBI	TTCGAA	2 cut(s)	1028, 1638
BstC8I	GCNNGC	9 cut(s)	332, 378, 416, 475, 1309, 1343, 1347, 1623, 2097
BstDEI	CTNAG	7 cut(s)	323, 765, 1004, 1214, 1323, 1437, 2145
BstDSI	CCRYGG	1 cut(s)	1296
BstENI	CCTNNNNNAGG	2 cut(s)	768, 1932
BstF5I	GGATG	7 cut(s)	790, 963, 1057, 1206, 1231, 1447, 2085
BstFNI	CGCG	8 cut(s)	130, 376, 378, 397, 628, 633, 673, 701
BstH2I	RGCGCY	2 cut(s)	415, 605
BstHHI	GCGC	9 cut(s)	132, 378, 380, 399, 414, 604, 630, 703, 821
BstKTI	GATC	7 cut(s)	810, 882, 1485, 1572, 1657, 1912, 2210
BstMAI	GTCTC	3 cut(s)	94, 930, 981
BstMBI	GATC	7 cut(s)	807, 879, 1482, 1569, 1654, 1909, 2207
BstMCI	CGRYCG	1 cut(s)	677
BstNI	CCWGG	3 cut(s)	547, 1223, 1409
BstNSI	RCATGY	1 cut(s)	1693
BstSCI	CCNGG	4 cut(s)	545, 1221, 1407, 1828
BstSFI	CTRYAG	1 cut(s)	1397
BstUI	CGCG	8 cut(s)	130, 376, 378, 397, 628, 633, 673, 701
BstV1I	GCAGC	5 cut(s)	559, 1383, 1405, 1960, 2153
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	2 cut(s)	1909, 2207
BstYI	RGATCY	2 cut(s)	1909, 2207
BstZI	CGGCCG	1 cut(s)	674
Bsu15I	ATCGAT	1 cut(s)	1485
BsuI	GTATCC	1 cut(s)	1939
BsuRI	GGCC	7 cut(s)	447, 473, 477, 545, 591, 676, 1820
BsuTUI	ATCGAT	1 cut(s)	1485
BtgI	CCRYGG	1 cut(s)	1296
BtrI	CACGTC	1 cut(s)	538
BtsCI	GGATG	7 cut(s)	790, 963, 1057, 1206, 1231, 1447, 2085
BtsIMutI	CAGTG	5 cut(s)	82, 891, 1151, 1211, 1516
Cac8I	GCNNGC	9 cut(s)	332, 378, 416, 475, 1309, 1343, 1347, 1623, 2097
CaiI	CAGNNNCTG	2 cut(s)	179, 1396
CfoI	GCGC	9 cut(s)	132, 378, 380, 399, 414, 604, 630, 703, 821
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	2 cut(s)	590, 1300
ClaI	ATCGAT	1 cut(s)	1485
CseI	GACGC	2 cut(s)	440, 622
Csp6I	GTAC	1 cut(s)	1872
CviAII	CATG	5 cut(s)	511, 1250, 1297, 1690, 1763
CviQI	GTAC	1 cut(s)	1872
DdeI	CTNAG	7 cut(s)	323, 765, 1004, 1214, 1323, 1437, 2145
DpnI	GATC	7 cut(s)	809, 881, 1484, 1571, 1656, 1911, 2209
DpnII	GATC	7 cut(s)	807, 879, 1482, 1569, 1654, 1909, 2207
DraIII	CACNNNGTG	1 cut(s)	888
EaeI	YGGCCR	3 cut(s)	475, 674, 1818
EagI	CGGCCG	1 cut(s)	674
Eam1104I	CTCTTC	5 cut(s)	264, 617, 1036, 2010, 2129
EarI	CTCTTC	5 cut(s)	264, 617, 1036, 2010, 2129
EciI	GGCGGA	3 cut(s)	242, 410, 680
EclXI	CGGCCG	1 cut(s)	674
Eco130I	CCWWGG	2 cut(s)	468, 1296
Eco147I	AGGCCT	1 cut(s)	545
Eco31I	GGTCTC	2 cut(s)	94, 981
Eco47I	GGWCC	1 cut(s)	1300
Eco47III	AGCGCT	1 cut(s)	603
Eco52I	CGGCCG	1 cut(s)	674
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	2 cut(s)	1234, 1659
EcoNI	CCTNNNNNAGG	2 cut(s)	768, 1932
EcoRI	GAATTC	2 cut(s)	904, 1030
EcoRII	CCWGG	3 cut(s)	545, 1221, 1407
EcoT14I	CCWWGG	2 cut(s)	468, 1296
EcoT22I	ATGCAT	1 cut(s)	2073
ErhI	CCWWGG	2 cut(s)	468, 1296
FaeI	CATG	5 cut(s)	514, 1253, 1300, 1693, 1766
FatI	CATG	5 cut(s)	510, 1249, 1296, 1689, 1762
FauI	CCCGC	5 cut(s)	172, 308, 491, 1282, 1438
FbaI	TGATCA	1 cut(s)	807
FokI	GGATG	7 cut(s)	797, 970, 1064, 1213, 1238, 1454, 2092
FseI	GGCCGGCC	1 cut(s)	477
GlaI	GCGC	9 cut(s)	131, 377, 379, 398, 413, 603, 629, 702, 820
GsaI	CCCAGC	3 cut(s)	176, 343, 1179
GsuI	CTGGAG	1 cut(s)	568
HaeII	RGCGCY	2 cut(s)	415, 605
HaeIII	GGCC	7 cut(s)	447, 473, 477, 545, 591, 676, 1820
HapII	CCGG	7 cut(s)	474, 522, 579, 653, 677, 782, 1829
HgaI	GACGC	2 cut(s)	440, 622
HhaI	GCGC	9 cut(s)	132, 378, 380, 399, 414, 604, 630, 703, 821
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	5 cut(s)	514, 1253, 1300, 1693, 1766
Hin6I	GCGC	9 cut(s)	130, 376, 378, 397, 412, 602, 628, 701, 819
HinP1I	GCGC	9 cut(s)	130, 376, 378, 397, 412, 602, 628, 701, 819
HindIII	AAGCTT	2 cut(s)	236, 1593
HinfI	GANTC	8 cut(s)	280, 668, 767, 1000, 1237, 1730, 1904, 2026
HpaII	CCGG	7 cut(s)	474, 522, 579, 653, 677, 782, 1829
HphI	GGTGA	4 cut(s)	21, 737, 1763, 1901
Hpy166II	GTNNAC	3 cut(s)	1094, 2049, 2171
Hpy188I	TCNGA	8 cut(s)	598, 935, 1200, 1356, 1749, 1900, 1909, 2034
Hpy188III	TCNNGA	6 cut(s)	637, 742, 1480, 1608, 1984, 1994
Hpy8I	GTNNAC	3 cut(s)	1094, 2049, 2171
Hpy99I	CGWCG	7 cut(s)	206, 434, 461, 560, 587, 590, 758
HpyCH4III	ACNGT	6 cut(s)	556, 886, 1195, 1267, 1304, 1511
HpyCH4IV	ACGT	3 cut(s)	537, 1096, 1361
HpyCH4V	TGCA	7 cut(s)	996, 1277, 1349, 1399, 1494, 1710, 2071
HpyF3I	CTNAG	7 cut(s)	323, 765, 1004, 1214, 1323, 1437, 2145
HpySE526I	ACGT	3 cut(s)	537, 1096, 1361
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	5 cut(s)	514, 1253, 1300, 1693, 1766
HspAI	GCGC	9 cut(s)	130, 376, 378, 397, 412, 602, 628, 701, 819
KroI	GCCGGC	1 cut(s)	473
KroNI	GCCGGC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	807
Kzo9I	GATC	7 cut(s)	807, 879, 1482, 1569, 1654, 1909, 2207
LguI	GCTCTTC	1 cut(s)	617
LmnI	GCTCC	7 cut(s)	423, 519, 524, 549, 871, 1417, 1564
Lsp1109I	GCAGC	5 cut(s)	559, 1383, 1405, 1960, 2153
LweI	GCATC	3 cut(s)	1191, 1432, 2058
MaeII	ACGT	3 cut(s)	537, 1096, 1361
MaeIII	GTNAC	4 cut(s)	622, 1081, 1183, 1252
MalI	GATC	7 cut(s)	809, 881, 1484, 1571, 1656, 1911, 2209
MbiI	CCGCTC	1 cut(s)	519
MboI	GATC	7 cut(s)	807, 879, 1482, 1569, 1654, 1909, 2207
MflI	RGATCY	2 cut(s)	1909, 2207
MhlI	GDGCHC	3 cut(s)	554, 1309, 1522
MlsI	TGGCCA	1 cut(s)	1820
MluCI	AATT	9 cut(s)	43, 718, 904, 1015, 1030, 1075, 1554, 1998, 2176
MluNI	TGGCCA	1 cut(s)	1820
MlyI	GAGTC	3 cut(s)	662, 776, 1246
MmeI	TCCRAC	3 cut(s)	808, 837, 1940
Mox20I	TGGCCA	1 cut(s)	1820
Mph1103I	ATGCAT	1 cut(s)	2073
MroNI	GCCGGC	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	1820
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	3 cut(s)	1224, 1586, 1776
Msp20I	TGGCCA	1 cut(s)	1820
MspA1I	CMGCKG	4 cut(s)	179, 343, 1396, 2144
MspI	CCGG	7 cut(s)	474, 522, 579, 653, 677, 782, 1829
MspR9I	CCNGG	4 cut(s)	547, 1223, 1409, 1830
Mva1269I	GAATGC	3 cut(s)	712, 1177, 2071
MvaI	CCWGG	3 cut(s)	547, 1223, 1409
MvnI	CGCG	8 cut(s)	130, 376, 378, 397, 628, 633, 673, 701
NaeI	GCCGGC	1 cut(s)	475
NciI	CCSGG	1 cut(s)	1830
NcoI	CCATGG	1 cut(s)	1296
NdeII	GATC	7 cut(s)	807, 879, 1482, 1569, 1654, 1909, 2207
NgoMIV	GCCGGC	1 cut(s)	473
NlaIII	CATG	5 cut(s)	514, 1253, 1300, 1693, 1766
NlaIV	GGNNCC	3 cut(s)	775, 1220, 1294
NmeAIII	GCCGAG	3 cut(s)	423, 673, 802
NmuCI	GTSAC	2 cut(s)	622, 1252
NsiI	ATGCAT	1 cut(s)	2073
NspI	RCATGY	1 cut(s)	1693
NspV	TTCGAA	2 cut(s)	1028, 1638
PaeR7I	CTCGAG	1 cut(s)	1234
PauI	GCGCGC	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	545
PciI	ACATGT	1 cut(s)	1689
PciSI	GCTCTTC	1 cut(s)	617
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PctI	GAATGC	3 cut(s)	712, 1177, 2071
PdiI	GCCGGC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	5 cut(s)	280, 1000, 1730, 1904, 2026
PleI	GAGTC	3 cut(s)	662, 775, 1245
PpsI	GAGTC	3 cut(s)	662, 775, 1245
PscI	ACATGT	1 cut(s)	1689
PsiI	TTATAA	1 cut(s)	798
Psp6I	CCWGG	3 cut(s)	545, 1221, 1407
PspFI	CCCAGC	3 cut(s)	172, 339, 1175
PspGI	CCWGG	3 cut(s)	545, 1221, 1407
PspN4I	GGNNCC	3 cut(s)	775, 1220, 1294
PspPI	GGNCC	2 cut(s)	590, 1300
PspXI	VCTCGAGB	1 cut(s)	1234
PstI	CTGCAG	1 cut(s)	1401
PstNI	CAGNNNCTG	2 cut(s)	179, 1396
PsuI	RGATCY	2 cut(s)	1909, 2207
PteI	GCGCGC	1 cut(s)	376
PvuII	CAGCTG	3 cut(s)	343, 1396, 2144
RigI	GGCCGGCC	1 cut(s)	477
RsaI	GTAC	1 cut(s)	1873
RsaNI	GTAC	1 cut(s)	1872
RseI	CAYNNNNRTG	3 cut(s)	1224, 1586, 1776
SapI	GCTCTTC	1 cut(s)	617
SaqAI	TTAA	1 cut(s)	185
Sau3AI	GATC	7 cut(s)	807, 879, 1482, 1569, 1654, 1909, 2207
Sau96I	GGNCC	2 cut(s)	590, 1300
SchI	GAGTC	3 cut(s)	662, 776, 1246
ScrFI	CCNGG	4 cut(s)	547, 1223, 1409, 1830
SduI	GDGCHC	3 cut(s)	554, 1309, 1522
SfaNI	GCATC	3 cut(s)	1191, 1432, 2058
SfcI	CTRYAG	1 cut(s)	1397
Sfr274I	CTCGAG	1 cut(s)	1234
SfuI	TTCGAA	2 cut(s)	1028, 1638
SinI	GGWCC	1 cut(s)	1300
SlaI	CTCGAG	1 cut(s)	1234
SmiMI	CAYNNNNRTG	3 cut(s)	1224, 1586, 1776
SmlI	CTYRAG	3 cut(s)	605, 1234, 1376
SmoI	CTYRAG	3 cut(s)	605, 1234, 1376
Sse9I	AATT	9 cut(s)	43, 718, 904, 1015, 1030, 1075, 1554, 1998, 2176
SseBI	AGGCCT	1 cut(s)	545
StuI	AGGCCT	1 cut(s)	545
StyD4I	CCNGG	4 cut(s)	545, 1221, 1407, 1828
StyI	CCWWGG	2 cut(s)	468, 1296
TaaI	ACNGT	6 cut(s)	556, 886, 1195, 1267, 1304, 1511
TaiI	ACGT	3 cut(s)	540, 1099, 1364
TaqI	TCGA	8 cut(s)	429, 753, 1028, 1235, 1485, 1638, 1698, 2075
TaqII	GACCGA	1 cut(s)	610
TasI	AATT	9 cut(s)	43, 718, 904, 1015, 1030, 1075, 1554, 1998, 2176
TatI	WGTACW	1 cut(s)	1871
TfiI	GAWTC	5 cut(s)	280, 1000, 1730, 1904, 2026
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	5 cut(s)	89, 891, 1158, 1218, 1516
TseFI	GTSAC	2 cut(s)	622, 1252
TseI	GCWGC	5 cut(s)	572, 1393, 1396, 1973, 2141
Tsp45I	GTSAC	2 cut(s)	622, 1252
TspDTI	ATGAA	9 cut(s)	17, 240, 1172, 1184, 1551, 1604, 1769, 1869, 1947
TspRI	CASTG	5 cut(s)	89, 891, 1158, 1218, 1516
VpaK11BI	GGWCC	1 cut(s)	1300
XagI	CCTNNNNNAGG	2 cut(s)	768, 1932
XapI	RAATTY	4 cut(s)	904, 1015, 1030, 1075
XbaI	TCTAGA	1 cut(s)	1993
XceI	RCATGY	1 cut(s)	1693
XhoI	CTCGAG	1 cut(s)	1234
XmnI	GAANNNNTTC	1 cut(s)	749
Zsp2I	ATGCAT	1 cut(s)	2073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.