Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001854

Physical Location & Seq

Genomic Coordinates Forward (+)

7511764 .. 7516208

Gene Structure 4445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0096200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1932 bp

ATGGTTGATCCTCCTCTAAATAGTAATTACAGACGACCTACTTGCGTGACTCCTATTATGGACACGGCAGCGCGTATTGCTCAGATGTCCACCACGCATAGGAGAATTTTTGGTGAGAGATTGAAGTTCCTTTATTCGCATTGGAACAAACACCGATCTGATATGTGGGGTTGTTCCGATGTTATCGCAATAGGAAAACTACCAGCATCAAAGGATCCGCAGTACCGCAAGTCTACGGCATTGAATGTCTGGCTGGTGGGTTTTGAGTTTCCAGAGACAATGATGGTGTTCACTAAGAAAAGAATTCATTTCTTCTGCAACCAAGGTGACTCTTTCAATCCTGCTCTTCTCAGGATGCCTGCAATGAAGGCTGTGGGTGTAGACATTGTGAGGCATGTGATACGAGACGTTGATGTCTACTCTGCTCTGATGGATAATTTATTGCGTGACATTTGCGCTCAAGCAAAGGCCGATGGCCATGAAATTCCTGTTGTGGGACACATAGGAGGGGAGGTTCCTGAGGGATTTCTTTTTGAATCTTGGTCTGAAAAGCTGAAGAATGCAAATTTTCGGATGAGTGATGTAACTAATGGGTTGTCTGACTTGTTGTCTGTCAAAGAAAATGAGGAGCTTGTGAATGTGAAGAGAGCTGCTTTCTTGACTACTAAGGTCATGAATAATATTGTGGTTCCAAATCTTGAGTTTGTTATTAATCACAGTGAGAAGGTAACACATTCTTTTTTGATGGATGAGATGGTGAAGGCCATACAGGAACCCTCTAAAGCTTTTGCGAAGCTGATTAATGTAGAAAACGTTGGTATCTGTTACCCTCCTATTCTTCAGAGTGGTGTTGGTGGCAATGATGAGTTACTTTCATATGATTCTGCTAGTGTGGTCATATGTGCTTTTGGATCCCGTTATAAGAGTTACTGCTCAAATGTAGCCAGGACATTTTTGGTTGATCCCAATCCCTTTCAGAGAAAGGCACATGAAATTCTTCTCAAGGCCCATGATGCAGCCATTAGTGAGTTGAGGCCTGGGAACAAAGCTAGTTCTGCATATCAAGCAGCTCGTTCTGTCGTGGAGAAGGAGGCTCCTGAGTTAGTACCTAATCTGACAGAATCTGCTGGGACAGGCATTGGTATTGAGCTTGTTGAGTCCCGGTTGAAACTTAATGCGAACAATGACCCAGTGCTGAAAGCAGGAATGGTGTTCAATGTGTCACTTGGTTTTGAGGACTTGCAGAGTCACAGTGGTCTTACCAATTCAAAGGATCAGAGCTTCTCTTTGTTGCTAGCTGATACTGTTGTTATTAACAATGTCAAGCCAGAGGTCTTGACAGTCGAAAGTGCTAAAGCTATTAAGGTTCCTAGTAAAATGAAACAAGATGCTAATGGAACAGAAGATCTGCGGTCCAGCAAAAGGATGAGGTTCAAGCTTGACTGGAATGATGAGCTTGACGGGAACGATGAGCCCACTTTCTCTGTTGTATCCACTCAGCCTTCCACTTTTTCCCTGGGTGTTCCATTGCTTTGGTCACATTCGGGTCTGGCACCTGCTGATGTACAGACTGACCCTCTCAATGCCAGAGAGAGGTTGTCATATGCGGAAAGGGGGAAGTCCACAGGGATAAAACCCACAGAGAAAATGGATATGCTAATAGCCAAGTACTATATTGATGACACAAAGGGTCGTGTGCAGCTAACAGAGCGTACAGTTCCAGTGTCGCAGACAGAAACACCTCCATGGCAGACAGAAAGAGCTTCATATGGTATACCTTCATGGAAGAGAGAAAGATCATCATGGAAGAGAGAAAGACCGTCTTCATTCGTTACACCTCCATGGGTAGCAAAACCTGCATTAGGCACACTTGACTGGAAGACAGACAGACCTGTTACACCTCCAAGGAAGAAACAAGGTCTTGTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

643

Amino Acids

71.71

Weight (kDa)

8.58

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FACT-Spt16_Nlob	PF14826	36 - 197	1.8e-27	FACT complex subunit SPT16 N-terminal lobe domain
Peptidase_M24	PF00557	242 - 438	4.9e-27	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37060 AT2G37060 AT2G37060 AT3G53340 AT3G53340 AT3G53340 AT3G53340 AT3G53340
fragaria_vesca	FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260
malus_domestica	MD04G1104700.v1.1 MD12G1124800.v1.1
prunus_persica	Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1
pyrus_communis	pycom04g09970 pycom12g12320
rosa_chinensis	RchiOBHm_Chr2g0145071 RchiOBHm_Chr3g0468661 RchiOBHm_Chr5g0066261
rosa_laevigata	RLG00000024032 RLG00000024417
rosa_multiflora	Rmu_co8446349.1_g000001 Rmu_sc0009516.1_g000001 Rmu_sc0011538.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010930 Rroxscaffold_6G00412670
rosa_rugosa	Rorug03G0096100 Rorug03G0096200 Rorug03G0096200 Rorug03G0096200
rosa_samantha	Rh1AG429500 Rh1BG152900 Rh2AG054200 Rh2DG539500 Rh3AG144900 Rh3BG167300 Rh3BG326700 Rh3DG166200
rosa_wichuraiana	Rw3G013660 Rw6G026160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	921
AarI	CACCTGC	1 cut(s)	1564
AasI	GACNNNNNNGTC	1 cut(s)	413
Acc36I	ACCTGC	2 cut(s)	1564, 1864
AccB1I	GGYRCC	1 cut(s)	1552
AccI	GTMKAC	4 cut(s)	233, 381, 417, 1774
AccII	CGCG	1 cut(s)	73
AciI	CCGC	4 cut(s)	218, 226, 1411, 1607
AclI	AACGTT	1 cut(s)	813
AclWI	GGATC	7 cut(s)	2, 209, 222, 906, 919, 956, 1281
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	5 cut(s)	105, 303, 483, 565, 993
AcuI	CTGAAG	2 cut(s)	575, 824
AfaI	GTAC	5 cut(s)	224, 1107, 1566, 1670, 1714
AfiI	CCNNNNNNNGG	5 cut(s)	99, 494, 1422, 1593, 1862
AgsI	TTSAA	8 cut(s)	124, 244, 337, 536, 1168, 1216, 1269, 1435
AhdI	GACNNNNNGTC	1 cut(s)	607
AjnI	CCWGG	3 cut(s)	944, 1036, 1515
AloI	GAACNNNNNNTCC	2 cut(s)	498, 530
Alw26I	GTCTC	2 cut(s)	269, 399
AlwI	GGATC	7 cut(s)	2, 209, 222, 906, 919, 956, 1281
AlwNI	CAGNNNCTG	1 cut(s)	1124
AoxI	GGCC	5 cut(s)	468, 475, 762, 1005, 1034
ApeKI	GCWGC	5 cut(s)	68, 650, 1016, 1067, 1699
ApoI	RAATTY	5 cut(s)	105, 303, 483, 565, 993
AseI	ATTAAT	2 cut(s)	711, 801
Asp700I	GAANNNNTTC	1 cut(s)	996
AspLEI	GCGC	2 cut(s)	73, 458
AspS9I	GGNCC	2 cut(s)	1006, 1413
AsuC2I	CCSGG	1 cut(s)	1162
AsuHPI	GGTGA	3 cut(s)	125, 338, 769
AsuNHI	GCTAGC	1 cut(s)	1294
AvaII	GGWCC	1 cut(s)	1413
AxyI	CCTNAGG	1 cut(s)	519
BaeI	ACNNNNGTAYC	4 cut(s)	802, 835, 1293, 1326
BalI	TGGCCA	1 cut(s)	477
BamHI	GGATCC	2 cut(s)	214, 911
BanI	GGYRCC	1 cut(s)	1552
BanII	GRGCYC	1 cut(s)	1476
BbsI	GAAGAC	2 cut(s)	1815, 1886
BbvI	GCAGC	5 cut(s)	80, 637, 1028, 1079, 1711
BccI	CCATC	5 cut(s)	277, 424, 467, 739, 748
BceAI	ACGGC	2 cut(s)	81, 252
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	3 cut(s)	946, 1038, 1517
BciVI	GTATCC	1 cut(s)	1501
BcnI	CCSGG	1 cut(s)	1162
BcoDI	GTCTC	2 cut(s)	269, 399
BfaI	CTAG	4 cut(s)	888, 1050, 1295, 1371
BfuAI	ACCTGC	2 cut(s)	1564, 1864
BfuI	GTATCC	1 cut(s)	1501
BglII	AGATCT	1 cut(s)	1405
BisI	GCNGC	5 cut(s)	69, 651, 1017, 1068, 1700
BlsI	GCNGC	5 cut(s)	70, 652, 1018, 1069, 1701
BmcAI	AGTACT	1 cut(s)	1670
Bme1390I	CCNGG	4 cut(s)	946, 1038, 1162, 1517
Bme18I	GGWCC	1 cut(s)	1413
BmeRI	GACNNNNNGTC	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	1006, 1413
BmiI	GGNNCC	8 cut(s)	216, 516, 690, 774, 913, 1095, 1368, 1554
BmrFI	CCNGG	4 cut(s)	946, 1038, 1162, 1517
BmrI	ACTGGG	1 cut(s)	1184
BmsI	GCATC	4 cut(s)	215, 345, 1003, 1378
BmtI	GCTAGC	1 cut(s)	1298
BmuI	ACTGGG	1 cut(s)	1184
BpiI	GAAGAC	2 cut(s)	1815, 1886
BpuEI	CTTGAG	3 cut(s)	444, 719, 986
BpuMI	CCSGG	1 cut(s)	1162
BsaBI	GATNNNNATC	1 cut(s)	966
BsaJI	CCNNGG	7 cut(s)	322, 1037, 1515, 1516, 1745, 1841, 1904
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	5 cut(s)	99, 494, 1422, 1593, 1862
Bse1I	ACTGG	4 cut(s)	1190, 1448, 1721, 1880
Bse21I	CCTNAGG	1 cut(s)	519
Bse3DI	GCAATG	3 cut(s)	369, 865, 1526
Bse8I	GATNNNNATC	1 cut(s)	966
BseBI	CCWGG	3 cut(s)	946, 1038, 1517
BseDI	CCNNGG	7 cut(s)	322, 1037, 1515, 1516, 1745, 1841, 1904
BseGI	GGATG	4 cut(s)	360, 579, 754, 1431
BseJI	GATNNNNATC	1 cut(s)	966
BseLI	CCNNNNNNNGG	5 cut(s)	99, 494, 1422, 1593, 1862
BseMI	GCAATG	3 cut(s)	369, 865, 1526
BseMII	CTCAG	5 cut(s)	95, 364, 510, 1089, 1511
BseNI	ACTGG	4 cut(s)	1190, 1448, 1721, 1880
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	5 cut(s)	80, 637, 1028, 1079, 1711
BseYI	CCCAGC	1 cut(s)	1127
BsgI	GTGCAG	1 cut(s)	1718
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	5 cut(s)	470, 477, 764, 1007, 1036
BshNI	GGYRCC	1 cut(s)	1552
BsiSI	CCGG	1 cut(s)	1162
BslFI	GGGAC	3 cut(s)	510, 1144, 1144
BslI	CCNNNNNNNGG	5 cut(s)	99, 494, 1422, 1593, 1862
BsmAI	GTCTC	2 cut(s)	269, 399
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	3 cut(s)	510, 1144, 1144
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	5 cut(s)	470, 477, 764, 1007, 1036
Bsp1286I	GDGCHC	1 cut(s)	1476
Bsp1407I	TGTACA	1 cut(s)	1564
Bsp143I	GATC	8 cut(s)	7, 155, 214, 911, 961, 1273, 1405, 1796
Bsp19I	CCATGG	2 cut(s)	1745, 1841
BspACI	CCGC	4 cut(s)	218, 226, 1411, 1607
BspANI	GGCC	5 cut(s)	470, 477, 764, 1007, 1036
BspCNI	CTCAG	5 cut(s)	94, 363, 511, 1090, 1510
BspFNI	CGCG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	8 cut(s)	216, 516, 690, 774, 913, 1095, 1368, 1554
BspMI	ACCTGC	2 cut(s)	1564, 1864
BspOI	GCTAGC	1 cut(s)	1298
BspPI	GGATC	7 cut(s)	2, 209, 222, 906, 919, 956, 1281
BspQI	GCTCTTC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	1552
BsrDI	GCAATG	3 cut(s)	369, 865, 1526
BsrGI	TGTACA	1 cut(s)	1564
BsrI	ACTGG	4 cut(s)	1190, 1448, 1721, 1880
BssECI	CCNNGG	7 cut(s)	322, 1037, 1515, 1516, 1745, 1841, 1904
BssMI	GATC	8 cut(s)	7, 155, 214, 911, 961, 1273, 1405, 1796
BssNAI	GTATAC	1 cut(s)	1775
BssT1I	CCWWGG	4 cut(s)	322, 1745, 1841, 1904
Bst1107I	GTATAC	1 cut(s)	1775
Bst2UI	CCWGG	3 cut(s)	946, 1038, 1517
Bst4CI	ACNGT	6 cut(s)	719, 1253, 1306, 1342, 1717, 1821
Bst6I	CTCTTC	4 cut(s)	351, 638, 1781, 1802
BstAPI	GCANNNNNTGC	1 cut(s)	1856
BstAUI	TGTACA	1 cut(s)	1564
BstC8I	GCNNGC	2 cut(s)	360, 1296
BstDEI	CTNAG	7 cut(s)	81, 294, 350, 519, 666, 1098, 1497
BstDSI	CCRYGG	2 cut(s)	1745, 1841
BstENI	CCTNNNNNAGG	1 cut(s)	1860
BstF5I	GGATG	4 cut(s)	360, 579, 754, 1431
BstFNI	CGCG	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	73, 458
BstKTI	GATC	8 cut(s)	10, 158, 217, 914, 964, 1276, 1408, 1799
BstMAI	GTCTC	2 cut(s)	269, 399
BstMBI	GATC	8 cut(s)	7, 155, 214, 911, 961, 1273, 1405, 1796
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 368, 1013, 1055, 1064, 1708, 1856
BstNI	CCWGG	3 cut(s)	946, 1038, 1517
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	4 cut(s)	944, 1036, 1160, 1515
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	5 cut(s)	80, 637, 1028, 1079, 1711
BstV2I	GAAGAC	2 cut(s)	1815, 1886
BstX2I	RGATCY	3 cut(s)	214, 911, 1405
BstXI	CCANNNNNNTGG	1 cut(s)	1533
BstYI	RGATCY	3 cut(s)	214, 911, 1405
BstZ17I	GTATAC	1 cut(s)	1775
Bsu36I	CCTNAGG	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	1501
BsuRI	GGCC	5 cut(s)	470, 477, 764, 1007, 1036
BtgI	CCRYGG	2 cut(s)	1745, 1841
BtsCI	GGATG	4 cut(s)	360, 579, 754, 1431
BtsIMutI	CAGTG	4 cut(s)	724, 1197, 1258, 1728
BveI	ACCTGC	2 cut(s)	1564, 1864
Cac8I	GCNNGC	2 cut(s)	360, 1296
CaiI	CAGNNNCTG	1 cut(s)	1124
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	2 cut(s)	73, 458
Cfr13I	GGNCC	2 cut(s)	1006, 1413
Csp6I	GTAC	5 cut(s)	223, 1106, 1565, 1669, 1713
CviAII	CATG	9 cut(s)	395, 479, 673, 989, 1010, 1746, 1782, 1803, 1842
CviQI	GTAC	5 cut(s)	223, 1106, 1565, 1669, 1713
DdeI	CTNAG	7 cut(s)	81, 294, 350, 519, 666, 1098, 1497
DpnI	GATC	8 cut(s)	9, 157, 216, 913, 963, 1275, 1407, 1798
DpnII	GATC	8 cut(s)	7, 155, 214, 911, 961, 1273, 1405, 1796
DrdI	GACNNNNNNGTC	1 cut(s)	413
DriI	GACNNNNNGTC	1 cut(s)	607
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	4 cut(s)	351, 638, 1781, 1802
Eam1105I	GACNNNNNGTC	1 cut(s)	607
EarI	CTCTTC	4 cut(s)	351, 638, 1781, 1802
Eco130I	CCWWGG	4 cut(s)	322, 1745, 1841, 1904
Eco147I	AGGCCT	1 cut(s)	1036
Eco24I	GRGCYC	1 cut(s)	1476
Eco47I	GGWCC	1 cut(s)	1413
Eco57I	CTGAAG	2 cut(s)	575, 824
Eco81I	CCTNAGG	1 cut(s)	519
EcoNI	CCTNNNNNAGG	1 cut(s)	1860
EcoRI	GAATTC	1 cut(s)	303
EcoRII	CCWGG	3 cut(s)	944, 1036, 1515
EcoT14I	CCWWGG	4 cut(s)	322, 1745, 1841, 1904
EcoT38I	GRGCYC	1 cut(s)	1476
ErhI	CCWWGG	4 cut(s)	322, 1745, 1841, 1904
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	9 cut(s)	398, 482, 676, 992, 1013, 1749, 1785, 1806, 1845
FalI	AAGNNNNNCTT	2 cut(s)	1807, 1839
FaqI	GGGAC	3 cut(s)	510, 1144, 1144
FatI	CATG	9 cut(s)	394, 478, 672, 988, 1009, 1745, 1781, 1802, 1841
FauNDI	CATATG	4 cut(s)	877, 899, 1603, 1768
FblI	GTMKAC	4 cut(s)	233, 381, 417, 1774
Fnu4HI	GCNGC	5 cut(s)	69, 651, 1017, 1068, 1700
FokI	GGATG	4 cut(s)	367, 586, 761, 1438
FriOI	GRGCYC	1 cut(s)	1476
Fsp4HI	GCNGC	5 cut(s)	69, 651, 1017, 1068, 1700
FspBI	CTAG	4 cut(s)	888, 1050, 1295, 1371
GlaI	GCGC	2 cut(s)	72, 457
GluI	GCNGC	5 cut(s)	69, 651, 1017, 1068, 1700
GsaI	CCCAGC	1 cut(s)	1131
HaeIII	GGCC	5 cut(s)	470, 477, 764, 1007, 1036
HapII	CCGG	1 cut(s)	1162
HhaI	GCGC	2 cut(s)	73, 458
Hin1II	CATG	9 cut(s)	398, 482, 676, 992, 1013, 1749, 1785, 1806, 1845
Hin6I	GCGC	2 cut(s)	71, 456
HinP1I	GCGC	2 cut(s)	71, 456
HindIII	AAGCTT	2 cut(s)	783, 1436
HinfI	GANTC	7 cut(s)	49, 329, 536, 881, 1121, 1157, 1246
HpaII	CCGG	1 cut(s)	1162
HphI	GGTGA	3 cut(s)	125, 338, 769
Hpy166II	GTNNAC	7 cut(s)	90, 234, 291, 382, 418, 1623, 1775
Hpy188III	TCNNGA	8 cut(s)	272, 352, 518, 658, 673, 698, 1097, 1336
Hpy8I	GTNNAC	7 cut(s)	90, 234, 291, 382, 418, 1623, 1775
HpyAV	CCTTC	6 cut(s)	361, 718, 754, 1081, 1512, 1788
HpyCH4III	ACNGT	6 cut(s)	719, 1253, 1306, 1342, 1717, 1821
HpyCH4IV	ACGT	2 cut(s)	408, 813
HpyCH4V	TGCA	8 cut(s)	318, 362, 563, 1016, 1058, 1243, 1699, 1859
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 368, 1013, 1055, 1064, 1708, 1856
HpyF3I	CTNAG	7 cut(s)	81, 294, 350, 519, 666, 1098, 1497
HpySE526I	ACGT	2 cut(s)	408, 813
Hsp92II	CATG	9 cut(s)	398, 482, 676, 992, 1013, 1749, 1785, 1806, 1845
HspAI	GCGC	2 cut(s)	71, 456
Kzo9I	GATC	8 cut(s)	7, 155, 214, 911, 961, 1273, 1405, 1796
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	628, 1099
Lsp1109I	GCAGC	5 cut(s)	80, 637, 1028, 1079, 1711
LweI	GCATC	4 cut(s)	215, 345, 1003, 1378
MaeI	CTAG	4 cut(s)	888, 1050, 1295, 1371
MaeII	ACGT	2 cut(s)	408, 813
MalI	GATC	8 cut(s)	9, 157, 216, 913, 963, 1275, 1407, 1798
MboI	GATC	8 cut(s)	7, 155, 214, 911, 961, 1273, 1405, 1796
MflI	RGATCY	3 cut(s)	214, 911, 1405
MhlI	GDGCHC	1 cut(s)	1476
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	8 cut(s)	25, 105, 303, 436, 483, 565, 993, 1264
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	4 cut(s)	43, 323, 1166, 1255
Mox20I	TGGCCA	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	996
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	5 cut(s)	711, 801, 1173, 1314, 1362
MslI	CAYNNNNRTG	2 cut(s)	1744, 1840
Msp20I	TGGCCA	1 cut(s)	477
MspI	CCGG	1 cut(s)	1162
MspR9I	CCNGG	4 cut(s)	946, 1038, 1162, 1517
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	3 cut(s)	946, 1038, 1517
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	7 cut(s)	77, 368, 1013, 1055, 1064, 1708, 1856
NciI	CCSGG	1 cut(s)	1162
NcoI	CCATGG	2 cut(s)	1745, 1841
NdeI	CATATG	4 cut(s)	877, 899, 1603, 1768
NdeII	GATC	8 cut(s)	7, 155, 214, 911, 961, 1273, 1405, 1796
NheI	GCTAGC	1 cut(s)	1294
NlaIII	CATG	9 cut(s)	398, 482, 676, 992, 1013, 1749, 1785, 1806, 1845
NlaIV	GGNNCC	8 cut(s)	216, 516, 690, 774, 913, 1095, 1368, 1554
NmuCI	GTSAC	6 cut(s)	46, 326, 446, 1221, 1247, 1536
NspI	RCATGY	1 cut(s)	398
PagI	TCATGA	1 cut(s)	672
PaqCI	CACCTGC	1 cut(s)	1564
PasI	CCCWGGG	1 cut(s)	1516
PceI	AGGCCT	1 cut(s)	1036
PciSI	GCTCTTC	1 cut(s)	351
PctI	GAATGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	3 cut(s)	536, 881, 1121
PkrI	GCNGC	5 cut(s)	70, 652, 1018, 1069, 1701
PleI	GAGTC	4 cut(s)	43, 323, 1165, 1254
PpsI	GAGTC	4 cut(s)	43, 323, 1165, 1254
PshBI	ATTAAT	2 cut(s)	711, 801
PsiI	TTATAA	1 cut(s)	921
Psp1406I	AACGTT	1 cut(s)	813
Psp6I	CCWGG	3 cut(s)	944, 1036, 1515
PspFI	CCCAGC	1 cut(s)	1127
PspGI	CCWGG	3 cut(s)	944, 1036, 1515
PspN4I	GGNNCC	8 cut(s)	216, 516, 690, 774, 913, 1095, 1368, 1554
PspPI	GGNCC	2 cut(s)	1006, 1413
PstNI	CAGNNNCTG	1 cut(s)	1124
PsuI	RGATCY	3 cut(s)	214, 911, 1405
RsaI	GTAC	5 cut(s)	224, 1107, 1566, 1670, 1714
RsaNI	GTAC	5 cut(s)	223, 1106, 1565, 1669, 1713
RseI	CAYNNNNRTG	2 cut(s)	1744, 1840
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	5 cut(s)	711, 801, 1173, 1314, 1362
SatI	GCNGC	5 cut(s)	69, 651, 1017, 1068, 1700
Sau3AI	GATC	8 cut(s)	7, 155, 214, 911, 961, 1273, 1405, 1796
Sau96I	GGNCC	2 cut(s)	1006, 1413
ScaI	AGTACT	1 cut(s)	1670
SchI	GAGTC	4 cut(s)	43, 323, 1166, 1255
ScrFI	CCNGG	4 cut(s)	946, 1038, 1162, 1517
SduI	GDGCHC	1 cut(s)	1476
SfaNI	GCATC	4 cut(s)	215, 345, 1003, 1378
SinI	GGWCC	1 cut(s)	1413
SmiMI	CAYNNNNRTG	2 cut(s)	1744, 1840
SmlI	CTYRAG	3 cut(s)	459, 698, 1001
SmoI	CTYRAG	3 cut(s)	459, 698, 1001
Sse9I	AATT	8 cut(s)	25, 105, 303, 436, 483, 565, 993, 1264
SseBI	AGGCCT	1 cut(s)	1036
SsiI	CCGC	4 cut(s)	218, 226, 1411, 1607
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	4 cut(s)	888, 1050, 1295, 1371
StuI	AGGCCT	1 cut(s)	1036
StyD4I	CCNGG	4 cut(s)	944, 1036, 1160, 1515
StyI	CCWWGG	4 cut(s)	322, 1745, 1841, 1904
TaaI	ACNGT	6 cut(s)	719, 1253, 1306, 1342, 1717, 1821
TaiI	ACGT	2 cut(s)	411, 816
TaqI	TCGA	1 cut(s)	1344
TasI	AATT	8 cut(s)	25, 105, 303, 436, 483, 565, 993, 1264
TatI	WGTACW	2 cut(s)	1564, 1668
TfiI	GAWTC	3 cut(s)	536, 881, 1121
Tru1I	TTAA	5 cut(s)	711, 801, 1173, 1314, 1362
Tru9I	TTAA	5 cut(s)	711, 801, 1173, 1314, 1362
TscAI	CASTG	4 cut(s)	724, 1197, 1258, 1728
TseFI	GTSAC	6 cut(s)	46, 326, 446, 1221, 1247, 1536
TseI	GCWGC	5 cut(s)	68, 650, 1016, 1067, 1699
Tsp45I	GTSAC	6 cut(s)	46, 326, 446, 1221, 1247, 1536
TspRI	CASTG	4 cut(s)	724, 1197, 1258, 1728
VpaK11BI	GGWCC	1 cut(s)	1413
VspI	ATTAAT	2 cut(s)	711, 801
XagI	CCTNNNNNAGG	1 cut(s)	1860
XapI	RAATTY	5 cut(s)	105, 303, 483, 565, 993
XceI	RCATGY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	3 cut(s)	952, 1513, 1645
XmiI	GTMKAC	4 cut(s)	233, 381, 417, 1774
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	4 cut(s)	888, 1050, 1295, 1371
ZrmI	AGTACT	1 cut(s)	1670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.