Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001854

Physical Location & Seq

Genomic Coordinates Reverse (-)

72388985 .. 72389687

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34203

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAGGTTGGGTACGACGAGTTTGGGTCTCCTCGGATTACTGCTGGTTCGCAGACTAGTGTTGGTGTCTCTGTTCCCGATCTGGTGTTTGCAAAGGCCAACGTTGGTGATTGGGTTGCTGATTGGAGGACCGATCCAGGCCAGAATGCTCTAGGGATGATGGCTGCTAGGTTTGACATTGGTGTCGGTGCAGAGTGGGGCGAAGATCGCTGGCAGAATTGGGGTGAGCTCGGGTGTATGGTGGTTTGCTTGTTGTCGGTGCTGTTTCGCTTGGAATCGGATCCATGTGCTACCAGCGATGGTGGAAGCGCGGGCGAGGTCCTCCGGCGAGTGGTGTCCGGTGGAGGGGGCAGGGCTATCTTCTCACTTAGGGTTTGCCCTAGATGGGTTGACTGGCCCTGGTATTGGGCTGCGAGGGCCTTGTCTTGGGCATGGCCGGTAGTGTTGCTTTTCTTTTTCAATTTTTGTTTGGGCCTTCATTTTTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.0

Weight (kDa)

4.75

Isoelectric Point (pI)

26.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37060 AT2G37060 AT2G37060 AT3G53340 AT3G53340 AT3G53340 AT3G53340 AT3G53340
fragaria_vesca	FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260
malus_domestica	MD04G1104700.v1.1 MD12G1124800.v1.1
prunus_persica	Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1
pyrus_communis	pycom04g09970 pycom12g12320
rosa_chinensis	RchiOBHm_Chr2g0145071 RchiOBHm_Chr3g0468661 RchiOBHm_Chr5g0066261
rosa_laevigata	RLG00000024032 RLG00000024417
rosa_multiflora	Rmu_co8446349.1_g000001 Rmu_sc0009516.1_g000001 Rmu_sc0011538.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010930 Rroxscaffold_6G00412670
rosa_rugosa	Rorug03G0096100 Rorug03G0096200 Rorug03G0096200 Rorug03G0096200
rosa_samantha	Rh1AG429500 Rh1BG152900 Rh2AG054200 Rh2DG539500 Rh3AG144900 Rh3BG167300 Rh3BG326700 Rh3DG166200
rosa_wichuraiana	Rw3G013660 Rw6G026160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccII	CGCG	1 cut(s)	311
AciI	CCGC	1 cut(s)	311
AclI	AACGTT	1 cut(s)	102
AclWI	GGATC	3 cut(s)	128, 275, 288
AcoI	YGGCCR	1 cut(s)	434
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	5 cut(s)	331, 345, 385, 405, 426
AgsI	TTSAA	1 cut(s)	460
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	2 cut(s)	136, 398
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	33, 73
AlwI	GGATC	3 cut(s)	128, 275, 288
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	6 cut(s)	96, 139, 395, 417, 434, 472
ApeKI	GCWGC	2 cut(s)	164, 410
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	5 cut(s)	129, 319, 396, 417, 472
AsuHPI	GGTGA	2 cut(s)	119, 236
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	129, 319
BamHI	GGATCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	151, 397
BccI	CCATC	3 cut(s)	154, 293, 378
BciT130I	CCWGG	2 cut(s)	138, 400
BcoDI	GTCTC	2 cut(s)	33, 73
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	4 cut(s)	57, 152, 168, 381
BisI	GCNGC	2 cut(s)	165, 411
BlsI	GCNGC	2 cut(s)	166, 412
Bme1390I	CCNGG	2 cut(s)	138, 400
Bme18I	GGWCC	2 cut(s)	129, 319
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	5 cut(s)	129, 319, 396, 417, 472
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	138, 400
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	32, 398
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	5 cut(s)	331, 345, 385, 405, 426
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	2 cut(s)	138, 400
BseDI	CCNNGG	2 cut(s)	32, 398
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	5 cut(s)	331, 345, 385, 405, 426
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	151, 397
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	6 cut(s)	98, 141, 397, 419, 436, 474
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	325, 339, 437
BslI	CCNNNNNNNGG	5 cut(s)	331, 345, 385, 405, 426
BsmAI	GTCTC	2 cut(s)	33, 73
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	6 cut(s)	98, 141, 397, 419, 436, 474
Bso31I	GGTCTC	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	79, 133, 205, 280
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	6 cut(s)	98, 141, 397, 419, 436, 474
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	3 cut(s)	128, 275, 288
BspTNI	GGTCTC	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	398
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	32, 398
BssMI	GATC	4 cut(s)	79, 133, 205, 280
Bst2UI	CCWGG	2 cut(s)	138, 400
BstC8I	GCNNGC	2 cut(s)	212, 313
BstDEI	CTNAG	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	4 cut(s)	82, 136, 208, 283
BstMAI	GTCTC	2 cut(s)	33, 73
BstMBI	GATC	4 cut(s)	79, 133, 205, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 416
BstNI	CCWGG	2 cut(s)	138, 400
BstSCI	CCNGG	2 cut(s)	136, 398
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	151, 397
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	6 cut(s)	98, 141, 397, 419, 436, 474
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	212, 313
CfoI	GCGC	1 cut(s)	311
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	5 cut(s)	129, 319, 396, 417, 472
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	285, 432
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	4 cut(s)	81, 135, 207, 282
DpnII	GATC	4 cut(s)	79, 133, 205, 280
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	434
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	129, 319
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	2 cut(s)	319, 417
EcoRII	CCWGG	2 cut(s)	136, 398
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	288, 435
FaiI	YATR	3 cut(s)	239, 286, 433
FatI	CATG	2 cut(s)	284, 431
FauI	CCCGC	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	165, 411
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	165, 411
FspBI	CTAG	4 cut(s)	57, 152, 168, 381
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	2 cut(s)	165, 411
HaeIII	GGCC	6 cut(s)	98, 141, 397, 419, 436, 474
HapII	CCGG	3 cut(s)	325, 339, 437
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	288, 435
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	3 cut(s)	325, 339, 437
HphI	GGTGA	2 cut(s)	119, 236
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	2 cut(s)	36, 280
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	485
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	92, 191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 416
HpyF3I	CTNAG	1 cut(s)	368
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	288, 435
HspAI	GCGC	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	79, 133, 205, 280
Lsp1109I	GCAGC	2 cut(s)	151, 397
MaeI	CTAG	4 cut(s)	57, 152, 168, 381
MaeII	ACGT	1 cut(s)	102
MalI	GATC	4 cut(s)	81, 135, 207, 282
MboI	GATC	4 cut(s)	79, 133, 205, 280
MboII	GAAGA	2 cut(s)	215, 352
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	217, 460
MnlI	CCTC	6 cut(s)	42, 120, 310, 332, 338, 408
MspI	CCGG	3 cut(s)	325, 339, 437
MspR9I	CCNGG	2 cut(s)	138, 400
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	2 cut(s)	138, 400
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	207, 416
NdeII	GATC	4 cut(s)	79, 133, 205, 280
NlaIII	CATG	2 cut(s)	288, 435
NlaIV	GGNNCC	1 cut(s)	282
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	166, 412
PpuMI	RGGWCCY	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	136, 398
PspGI	CCWGG	2 cut(s)	136, 398
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	5 cut(s)	129, 319, 396, 417, 472
PspPPI	RGGWCCY	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	2 cut(s)	165, 411
Sau3AI	GATC	4 cut(s)	79, 133, 205, 280
Sau96I	GGNCC	5 cut(s)	129, 319, 396, 417, 472
ScrFI	CCNGG	2 cut(s)	138, 400
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	5 cut(s)	9, 105, 173, 231, 321
SinI	GGWCC	2 cut(s)	129, 319
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	2 cut(s)	217, 460
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	4 cut(s)	57, 152, 168, 381
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	136, 398
TaiI	ACGT	1 cut(s)	105
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	2 cut(s)	217, 460
TfiI	GAWTC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	164, 410
TspDTI	ATGAA	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	129, 319
XspI	CTAG	4 cut(s)	57, 152, 168, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.