AT2G37060

factor y, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001854
Physical Location & Seq
Forward (+)
15575996 .. 15577916
1921 bp
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UTR
Exon/CDS
Intron
AT2G37060.2

Sequence Viewer

Length: 522 bp
ATGGCGGAGTCGCAGGCCAAGAGTCCCGGAGGCTGTGGAAGCCATGAGAGTGGTGGAGATCAAAGTCCCAGGTCGTTACATGTTCGTGAGCAAGATAGGTTTCTTCCGATTGCTAACATAAGCCGTATCATGAAAAGAGGTCTTCCTGCTAATGGGAAAATCGCTAAAGATGCTAAGGAGATTGTGCAGGAATGTGTCTCTGAATTCATCAGTTTCGTCACCAGCGAAGCGAGTGATAAATGTCAAAGAGAGAAAAGGAAGACTATTAATGGAGATGATTTGCTTTGGGCAATGGCTACTTTAGGATTTGAAGACTACATGGAACCTCTCAAGGTTTACCTGATGAGATATAGAGAGATGGAGGGTGACACAAAGGGATCAGCAAAAGGTGGGGATCCAAATGCAAAGAAAGATGGGCAATCAAGCCAAAATGGCCAGTTCTCGCAGCTTGCTCACCAAGGTCCTTATGGGAACTCTCAAGCTCAGCAGCATATGATGGTTCCAATGCCGGGAACAGACTAG

Protein Analysis

173

Amino Acids

19.0

Weight (kDa)

6.43

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 34 - 98 7.8e-27 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 3 cut(s) 385, 389, 402
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 152, 509
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 1 cut(s) 311
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 2 cut(s) 448, 482
AluI AGCT 2 cut(s) 448, 482
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 3 cut(s) 385, 389, 402
AoxI GGCC 2 cut(s) 15, 433
ApeKI GCWGC 2 cut(s) 445, 487
ApoI RAATTY 1 cut(s) 203
AseI ATTAAT 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 461
AsuC2I CCSGG 2 cut(s) 27, 510
AsuHPI GGTGA 3 cut(s) 211, 377, 446
AvaII GGWCC 1 cut(s) 461
BalI TGGCCA 1 cut(s) 435
BamHI GGATCC 1 cut(s) 394
BbsI GAAGAC 3 cut(s) 134, 266, 318
BbvI GCAGC 2 cut(s) 457, 499
BccI CCATC 3 cut(s) 352, 407, 490
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 1 cut(s) 70
BcnI CCSGG 2 cut(s) 27, 510
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 1 cut(s) 520
BglI GCCNNNNNGGC 1 cut(s) 432
BisI GCNGC 2 cut(s) 446, 488
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 2 cut(s) 447, 489
Bme1390I CCNGG 3 cut(s) 27, 70, 510
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 3 cut(s) 324, 396, 501
BmrFI CCNGG 3 cut(s) 27, 70, 510
BmsI GCATC 1 cut(s) 160
BpiI GAAGAC 3 cut(s) 134, 266, 318
Bpu10I CCTNAGC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 483
BpuEI CTTGAG 2 cut(s) 314, 462
BpuMI CCSGG 2 cut(s) 27, 510
BsaJI CCNNGG 2 cut(s) 68, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 509
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 68, 457
BseLI CCNNNNNNNGG 2 cut(s) 152, 509
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 1 cut(s) 436
BseXI GCAGC 2 cut(s) 457, 499
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 2 cut(s) 17, 435
BsiSI CCGG 2 cut(s) 27, 509
BslFI GGGAC 2 cut(s) 9, 51
BslI CCNNNNNNNGG 2 cut(s) 152, 509
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 2 cut(s) 9, 51
BsnI GGCC 2 cut(s) 17, 435
Bsp143I GATC 3 cut(s) 58, 377, 394
Bsp1720I GCTNAGC 1 cut(s) 483
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 17, 435
BspCNI CTCAG 1 cut(s) 496
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 324, 396, 501
BspPI GGATC 3 cut(s) 385, 389, 402
BsrDI GCAATG 1 cut(s) 297
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 68, 457
BssMI GATC 3 cut(s) 58, 377, 394
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 15, 450
BstDEI CTNAG 2 cut(s) 174, 483
BstKTI GATC 3 cut(s) 61, 380, 397
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 3 cut(s) 58, 377, 394
BstMWI GCNNNNNNNGC 3 cut(s) 39, 170, 432
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 3 cut(s) 25, 68, 508
BstV1I GCAGC 2 cut(s) 457, 499
BstV2I GAAGAC 3 cut(s) 134, 266, 318
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 50
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 2 cut(s) 17, 435
Cac8I GCNNGC 2 cut(s) 15, 450
CciI TCATGA 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 461
CviAII CATG 4 cut(s) 44, 80, 130, 319
CviJI RGCY 9 cut(s) 17, 33, 42, 123, 296, 426, 435, 448, 482
CviKI_1 RGCY 9 cut(s) 17, 33, 42, 123, 296, 426, 435, 448, 482
DdeI CTNAG 2 cut(s) 174, 483
DpnI GATC 3 cut(s) 60, 379, 396
DpnII GATC 3 cut(s) 58, 377, 394
EaeI YGGCCR 1 cut(s) 433
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 4 cut(s) 47, 83, 133, 322
FaiI YATR 9 cut(s) 45, 81, 119, 131, 320, 351, 468, 492, 494
FaqI GGGAC 2 cut(s) 9, 51
FatI CATG 4 cut(s) 43, 79, 129, 318
FauNDI CATATG 1 cut(s) 492
Fnu4HI GCNGC 2 cut(s) 446, 488
Fsp4HI GCNGC 2 cut(s) 446, 488
FspBI CTAG 1 cut(s) 520
GluI GCNGC 2 cut(s) 446, 488
HaeIII GGCC 2 cut(s) 17, 435
HapII CCGG 2 cut(s) 27, 509
Hin1II CATG 4 cut(s) 47, 83, 133, 322
HinfI GANTC 2 cut(s) 8, 22
HpaII CCGG 2 cut(s) 27, 509
HphI GGTGA 3 cut(s) 211, 377, 446
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 108, 202
Hpy188III TCNNGA 2 cut(s) 86, 130
Hpy8I GTNNAC 1 cut(s) 337
HpyCH4V TGCA 2 cut(s) 187, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 170, 432
HpyF3I CTNAG 2 cut(s) 174, 483
Hsp92II CATG 4 cut(s) 47, 83, 133, 322
Kzo9I GATC 3 cut(s) 58, 377, 394
LpnPI CCDG 8 cut(s) 40, 55, 82, 159, 173, 235, 353, 449
Lsp1109I GCAGC 2 cut(s) 457, 499
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 520
MaeIII GTNAC 3 cut(s) 75, 217, 365
MalI GATC 3 cut(s) 60, 379, 396
MboI GATC 3 cut(s) 58, 377, 394
MboII GAAGA 4 cut(s) 95, 134, 271, 323
MflI RGATCY 1 cut(s) 394
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 1 cut(s) 203
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 2 cut(s) 17, 31
MnlI CCTC 4 cut(s) 23, 131, 336, 355
Mox20I TGGCCA 1 cut(s) 435
MscI TGGCCA 1 cut(s) 435
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 2 cut(s) 48, 84
Msp20I TGGCCA 1 cut(s) 435
MspI CCGG 2 cut(s) 27, 509
MspR9I CCNGG 3 cut(s) 27, 70, 510
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 39, 170, 432
NciI CCSGG 2 cut(s) 27, 510
NdeI CATATG 1 cut(s) 492
NdeII GATC 3 cut(s) 58, 377, 394
NlaIII CATG 4 cut(s) 47, 83, 133, 322
NlaIV GGNNCC 3 cut(s) 324, 396, 501
NmuCI GTSAC 2 cut(s) 217, 365
NspI RCATGY 1 cut(s) 83
PagI TCATGA 1 cut(s) 129
PciI ACATGT 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfoI TCCNGGA 1 cut(s) 25
PkrI GCNGC 2 cut(s) 447, 489
PleI GAGTC 2 cut(s) 16, 30
PpsI GAGTC 2 cut(s) 16, 30
PpuMI RGGWCCY 1 cut(s) 461
PscI ACATGT 1 cut(s) 79
PshBI ATTAAT 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 3 cut(s) 324, 396, 501
PspPI GGNCC 1 cut(s) 461
PspPPI RGGWCCY 1 cut(s) 461
PsuI RGATCY 1 cut(s) 394
RseI CAYNNNNRTG 2 cut(s) 48, 84
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 2 cut(s) 446, 488
Sau3AI GATC 3 cut(s) 58, 377, 394
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 2 cut(s) 17, 31
ScrFI CCNGG 3 cut(s) 27, 70, 510
SfaNI GCATC 1 cut(s) 160
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 2 cut(s) 48, 84
SmlI CTYRAG 2 cut(s) 329, 477
SmoI CTYRAG 2 cut(s) 329, 477
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 520
StyD4I CCNGG 3 cut(s) 25, 68, 508
StyI CCWWGG 1 cut(s) 457
TasI AATT 1 cut(s) 203
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseFI GTSAC 2 cut(s) 217, 365
TseI GCWGC 2 cut(s) 445, 487
Tsp45I GTSAC 2 cut(s) 217, 365
TspDTI ATGAA 2 cut(s) 146, 196
VpaK11BI GGWCC 1 cut(s) 461
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 2 cut(s) 50, 464
XspI CTAG 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.