RchiOBHm_Chr2g0145071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001854
Physical Location & Seq
Forward (+)
62667775 .. 62672474
4700 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51494

Sequence Viewer

Length: 837 bp
ATGGTGGCTAAATTGAAACGTCTGGCTAGTGGGTGCCTTGCATTCTCAACCAAGGGGGTCTCTTTATCTTCGTCTTGGCTGTACCTCGGTGTCGCGGGGCTCGCTCGATGGCGCTTGCTTTGTGTAGGTTGCGGCCTTGTTCTCTTGGTTGCGGGTGTGGCTTGGGACCGGGTTGTCGGTTGGATGAAGGCTACGAGGGCGGGCATCGGTGTCTGTGTTTCTAAGCATGGTGGTGGTGCTCTTTGGCACGGCCGTGATCGGTCGATTGTAATGAAGGACATAGGGACCAGTGGTGATCCCAATTCTTCTTCGGCGGCAGGTGGATGTCGGGTTGGATTTGGGTTTCGAGAATGGTGCCTCCAAGAGGGTGCTATCAATGGGGGTGGTAGCGCAGATGATGTTCTCTGGCGAGTGGTGCATGGCGGCGGCGGCGGCTTGAATGCTTTCTCATCTAGGGTTGCCGTAGGTGTTTTGGTCGGGCCTGGTATTGGGTTGCTAGGGTTTTGTTTAGGACCCGAGCAGTTGAGAGCTCGCAAAGAAAATAGAGACCTCGTCGTCTCTATTGGACTCACCGATAAAATCTGGGACAATACGTCCATCGCAATATCTTCCAGTGGAATGGTGGAAGTATGTTTCTCCATATGGCCAGGCTATCGCTGCATCATCTTCTACGGTAATATTAGGAAGGTATTGGTTGTTTCCAGCCTCAAATGGCGAGTCCCCAAACACAAACAACGCCACCTTATTATGATTGTGTTCTATACTAGTACTACTGGAGTACTGATCAGGATGATCATGATGATGACCGTAGAGAAGGAAGCTAATTGGGTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

29.85

Weight (kDa)

9.76

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 308
AasI GACNNNNNNGTC 2 cut(s) 173, 554
Acc36I ACCTGC 1 cut(s) 308
AccB1I GGYRCC 2 cut(s) 33, 354
AccII CGCG 1 cut(s) 95
AciI CCGC 9 cut(s) 95, 132, 152, 200, 314, 423, 426, 429, 432
AclWI GGATC 1 cut(s) 290
AcoI YGGCCR 2 cut(s) 250, 644
AfaI GTAC 3 cut(s) 83, 769, 780
AfiI CCNNNNNNNGG 2 cut(s) 364, 488
AgsI TTSAA 3 cut(s) 16, 439, 833
AhdI GACNNNNNGTC 1 cut(s) 592
AhlI ACTAGT 1 cut(s) 764
AjnI CCWGG 2 cut(s) 481, 646
AleI CACNNNNGTG 1 cut(s) 252
AluBI AGCT 2 cut(s) 530, 821
AluI AGCT 2 cut(s) 530, 821
Alw21I GWGCWC 2 cut(s) 241, 532
Alw26I GTCTC 3 cut(s) 64, 540, 562
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 515
AoxI GGCC 4 cut(s) 133, 250, 479, 644
ApeKI GCWGC 1 cut(s) 657
ArsI GACNNNNNNTTYG 2 cut(s) 702, 734
Asp700I GAANNNNTTC 1 cut(s) 443
AspLEI GCGC 2 cut(s) 114, 392
AspS9I GGNCC 4 cut(s) 166, 285, 479, 512
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 305, 562
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 3 cut(s) 166, 285, 512
BalI TGGCCA 1 cut(s) 646
BanI GGYRCC 2 cut(s) 33, 354
BanII GRGCYC 2 cut(s) 102, 532
Bbv12I GWGCWC 2 cut(s) 241, 532
BbvI GCAGC 1 cut(s) 644
BccI CCATC 2 cut(s) 102, 605
BceAI ACGGC 3 cut(s) 237, 265, 446
BcgI CGANNNNNNTGC 2 cut(s) 336, 370
BciT130I CCWGG 2 cut(s) 483, 648
BclI TGATCA 2 cut(s) 783, 792
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 3 cut(s) 64, 540, 562
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 4 cut(s) 27, 453, 497, 765
BfoI RGCGCY 1 cut(s) 115
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 7 cut(s) 133, 315, 424, 427, 430, 433, 658
BlsI GCNGC 7 cut(s) 134, 316, 425, 428, 431, 434, 659
BmcAI AGTACT 2 cut(s) 769, 780
Bme1390I CCNGG 3 cut(s) 170, 483, 648
Bme18I GGWCC 3 cut(s) 166, 285, 512
BmeRI GACNNNNNGTC 1 cut(s) 592
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 4 cut(s) 166, 285, 479, 512
BmiI GGNNCC 5 cut(s) 35, 167, 286, 356, 514
BmrFI CCNGG 3 cut(s) 170, 483, 648
BmsI GCATC 2 cut(s) 213, 669
BpmI CTGGAG 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 170
BsaI GGTCTC 2 cut(s) 64, 540
BsaJI CCNNGG 2 cut(s) 51, 85
Bsc4I CCNNNNNNNGG 2 cut(s) 364, 488
Bse1I ACTGG 3 cut(s) 288, 612, 778
BseBI CCWGG 2 cut(s) 483, 648
BseDI CCNNGG 2 cut(s) 51, 85
BseGI GGATG 3 cut(s) 189, 329, 795
BseLI CCNNNNNNNGG 2 cut(s) 364, 488
BseNI ACTGG 3 cut(s) 288, 612, 778
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 644
Bsh1236I CGCG 1 cut(s) 95
Bsh1285I CGRYCG 2 cut(s) 253, 263
BshFI GGCC 4 cut(s) 135, 252, 481, 646
BshNI GGYRCC 2 cut(s) 33, 354
BsiEI CGRYCG 2 cut(s) 253, 263
BsiHKAI GWGCWC 2 cut(s) 241, 532
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 4 cut(s) 179, 298, 599, 704
BslI CCNNNNNNNGG 2 cut(s) 364, 488
BsmAI GTCTC 3 cut(s) 64, 540, 562
BsmBI CGTCTC 1 cut(s) 562
BsmFI GGGAC 4 cut(s) 179, 298, 599, 704
BsmI GAATGC 2 cut(s) 41, 445
BsnI GGCC 4 cut(s) 135, 252, 481, 646
Bso31I GGTCTC 2 cut(s) 64, 540
BsoBI CYCGRG 1 cut(s) 515
Bsp1286I GDGCHC 3 cut(s) 102, 241, 532
Bsp143I GATC 4 cut(s) 256, 295, 783, 792
BspACI CCGC 9 cut(s) 95, 132, 152, 200, 314, 423, 426, 429, 432
BspANI GGCC 4 cut(s) 135, 252, 481, 646
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 5 cut(s) 35, 167, 286, 356, 514
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 1 cut(s) 290
BspT107I GGYRCC 2 cut(s) 33, 354
BspTNI GGTCTC 2 cut(s) 64, 540
BsrI ACTGG 3 cut(s) 288, 612, 778
BssECI CCNNGG 2 cut(s) 51, 85
BssMI GATC 4 cut(s) 256, 295, 783, 792
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 483, 648
Bst4CI ACNGT 2 cut(s) 674, 808
BstC8I GCNNGC 4 cut(s) 102, 116, 202, 532
BstDEI CTNAG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 3 cut(s) 189, 329, 795
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 2 cut(s) 114, 392
BstKTI GATC 4 cut(s) 259, 298, 786, 795
BstMAI GTCTC 3 cut(s) 64, 540, 562
BstMBI GATC 4 cut(s) 256, 295, 783, 792
BstMCI CGRYCG 2 cut(s) 253, 263
BstMWI GCNNNNNNNGC 7 cut(s) 101, 158, 197, 415, 429, 432, 657
BstNI CCWGG 2 cut(s) 483, 648
BstSCI CCNGG 3 cut(s) 168, 481, 646
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 644
BstXI CCANNNNNNTGG 1 cut(s) 619
BstZI CGGCCG 1 cut(s) 250
BsuRI GGCC 4 cut(s) 135, 252, 481, 646
BtgZI GCGATG 1 cut(s) 583
BtsCI GGATG 3 cut(s) 189, 329, 795
BtsIMutI CAGTG 2 cut(s) 295, 619
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 4 cut(s) 102, 116, 202, 532
CciI TCATGA 1 cut(s) 795
CfoI GCGC 2 cut(s) 114, 392
Cfr13I GGNCC 4 cut(s) 166, 285, 479, 512
Csp6I GTAC 3 cut(s) 82, 768, 779
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 3 cut(s) 227, 419, 796
CviQI GTAC 3 cut(s) 82, 768, 779
DdeI CTNAG 1 cut(s) 222
DpnI GATC 4 cut(s) 258, 297, 785, 794
DpnII GATC 4 cut(s) 256, 295, 783, 792
DrdI GACNNNNNNGTC 2 cut(s) 173, 554
DriI GACNNNNNGTC 1 cut(s) 592
DseDI GACNNNNNNGTC 2 cut(s) 173, 554
EaeI YGGCCR 2 cut(s) 250, 644
EagI CGGCCG 1 cut(s) 250
Eam1105I GACNNNNNGTC 1 cut(s) 592
Ecl136II GAGCTC 1 cut(s) 530
EclXI CGGCCG 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 51
Eco24I GRGCYC 2 cut(s) 102, 532
Eco31I GGTCTC 2 cut(s) 64, 540
Eco47I GGWCC 3 cut(s) 166, 285, 512
Eco52I CGGCCG 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 530
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 481, 646
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 2 cut(s) 102, 532
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 562
FaeI CATG 3 cut(s) 230, 422, 799
FaiI YATR 9 cut(s) 228, 281, 420, 631, 641, 643, 749, 762, 797
FaqI GGGAC 4 cut(s) 179, 298, 599, 704
FatI CATG 3 cut(s) 226, 418, 795
FauI CCCGC 3 cut(s) 88, 145, 193
FauNDI CATATG 1 cut(s) 641
FbaI TGATCA 2 cut(s) 783, 792
Fnu4HI GCNGC 7 cut(s) 133, 315, 424, 427, 430, 433, 658
FokI GGATG 3 cut(s) 196, 336, 802
FriOI GRGCYC 2 cut(s) 102, 532
Fsp4HI GCNGC 7 cut(s) 133, 315, 424, 427, 430, 433, 658
FspBI CTAG 4 cut(s) 27, 453, 497, 765
GlaI GCGC 2 cut(s) 113, 391
GluI GCNGC 7 cut(s) 133, 315, 424, 427, 430, 433, 658
GsuI CTGGAG 1 cut(s) 795
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 4 cut(s) 135, 252, 481, 646
HapII CCGG 1 cut(s) 169
HhaI GCGC 2 cut(s) 114, 392
Hin1II CATG 3 cut(s) 230, 422, 799
Hin6I GCGC 2 cut(s) 112, 390
HinP1I GCGC 2 cut(s) 112, 390
HinfI GANTC 2 cut(s) 567, 717
HpaII CCGG 1 cut(s) 169
HphI GGTGA 2 cut(s) 305, 562
Hpy188III TCNNGA 3 cut(s) 347, 787, 796
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 4 cut(s) 181, 268, 679, 808
HpyCH4III ACNGT 2 cut(s) 674, 808
HpyCH4IV ACGT 2 cut(s) 19, 593
HpyCH4V TGCA 3 cut(s) 41, 418, 660
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 158, 197, 415, 429, 432, 657
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 2 cut(s) 19, 593
Hsp92II CATG 3 cut(s) 230, 422, 799
HspAI GCGC 2 cut(s) 112, 390
Ksp22I TGATCA 2 cut(s) 783, 792
Kzo9I GATC 4 cut(s) 256, 295, 783, 792
Lsp1109I GCAGC 1 cut(s) 644
LweI GCATC 2 cut(s) 213, 669
MaeI CTAG 4 cut(s) 27, 453, 497, 765
MaeII ACGT 2 cut(s) 19, 593
MalI GATC 4 cut(s) 258, 297, 785, 794
MboI GATC 4 cut(s) 256, 295, 783, 792
MboII GAAGA 5 cut(s) 60, 297, 300, 600, 658
MhlI GDGCHC 3 cut(s) 102, 241, 532
MlsI TGGCCA 1 cut(s) 646
MluCI AATT 3 cut(s) 11, 301, 823
MluNI TGGCCA 1 cut(s) 646
MlyI GAGTC 2 cut(s) 561, 726
MmeI TCCRAC 2 cut(s) 161, 313
MnlI CCTC 6 cut(s) 95, 189, 358, 368, 560, 716
Mox20I TGGCCA 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 443
MscI TGGCCA 1 cut(s) 646
MslI CAYNNNNRTG 3 cut(s) 231, 252, 800
Msp20I TGGCCA 1 cut(s) 646
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 3 cut(s) 170, 483, 648
Mva1269I GAATGC 2 cut(s) 41, 445
MvaI CCWGG 2 cut(s) 483, 648
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 7 cut(s) 101, 158, 197, 415, 429, 432, 657
NciI CCSGG 1 cut(s) 170
NdeI CATATG 1 cut(s) 641
NdeII GATC 4 cut(s) 256, 295, 783, 792
NlaIII CATG 3 cut(s) 230, 422, 799
NlaIV GGNNCC 5 cut(s) 35, 167, 286, 356, 514
OliI CACNNNNGTG 1 cut(s) 252
PagI TCATGA 1 cut(s) 795
PaqCI CACCTGC 1 cut(s) 308
PctI GAATGC 2 cut(s) 41, 445
PdmI GAANNNNTTC 1 cut(s) 443
PflFI GACNNNGTC 1 cut(s) 551
PkrI GCNGC 7 cut(s) 134, 316, 425, 428, 431, 434, 659
PleI GAGTC 2 cut(s) 561, 725
PpsI GAGTC 2 cut(s) 561, 725
PpuMI RGGWCCY 1 cut(s) 512
Psp124BI GAGCTC 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 2 cut(s) 481, 646
PspGI CCWGG 2 cut(s) 481, 646
PspN4I GGNNCC 5 cut(s) 35, 167, 286, 356, 514
PspPI GGNCC 4 cut(s) 166, 285, 479, 512
PspPPI RGGWCCY 1 cut(s) 512
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 3 cut(s) 83, 769, 780
RsaNI GTAC 3 cut(s) 82, 768, 779
RseI CAYNNNNRTG 3 cut(s) 231, 252, 800
SacI GAGCTC 1 cut(s) 532
SatI GCNGC 7 cut(s) 133, 315, 424, 427, 430, 433, 658
Sau3AI GATC 4 cut(s) 256, 295, 783, 792
Sau96I GGNCC 4 cut(s) 166, 285, 479, 512
ScaI AGTACT 2 cut(s) 769, 780
SchI GAGTC 2 cut(s) 561, 726
ScrFI CCNGG 3 cut(s) 170, 483, 648
SduI GDGCHC 3 cut(s) 102, 241, 532
SfaNI GCATC 2 cut(s) 213, 669
SinI GGWCC 3 cut(s) 166, 285, 512
SmiMI CAYNNNNRTG 3 cut(s) 231, 252, 800
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 3 cut(s) 11, 301, 823
SsiI CCGC 9 cut(s) 95, 132, 152, 200, 314, 423, 426, 429, 432
SspI AATATT 1 cut(s) 679
SspMI CTAG 4 cut(s) 27, 453, 497, 765
SstI GAGCTC 1 cut(s) 532
StyD4I CCNGG 3 cut(s) 168, 481, 646
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 674, 808
TaiI ACGT 2 cut(s) 22, 596
TaqI TCGA 3 cut(s) 106, 263, 346
TaqII GACCGA 1 cut(s) 249
TasI AATT 3 cut(s) 11, 301, 823
TatI WGTACW 2 cut(s) 767, 778
TauI GCSGC 6 cut(s) 135, 317, 426, 429, 432, 435
TscAI CASTG 2 cut(s) 295, 619
TseI GCWGC 1 cut(s) 657
TspDTI ATGAA 2 cut(s) 200, 287
TspRI CASTG 2 cut(s) 295, 619
Tth111I GACNNNGTC 1 cut(s) 551
VpaK11BI GGWCC 3 cut(s) 166, 285, 512
XagI CCTNNNNNAGG 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 1 cut(s) 619
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 4 cut(s) 27, 453, 497, 765
ZrmI AGTACT 2 cut(s) 769, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.