Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001854

Physical Location & Seq

Genomic Coordinates Reverse (-)

35621656 .. 35624227

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024417

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCGGAAGGTCCGGTTAGCCCAGGCGGCGGCGGGAGCCACGACAGCGGCGGCGAGCACAGTCCGCGGTCGAATGTTCGAGAACAGGATCGGTATCTTCCGATCGCGAATATTAGCAGGATTATGAAGAAGGCGCTTCCGGCGAACGGTAAGATCGCCAAGGATGCGAAGGAGACTATGGAGGGTGATACCAAGGGTTCAGGCAAGGGTGGGGAGTCATCTTCTAAGAAAGAAGTTCAGCCGAGCTCAATTGCTCAGATTTCTCATCAAGGTTCTTTCTCTCAAGGAGCTAGTTACTCAAATTCTCAAACCCAACAAATGATGGTTCCTATGCAAGGCTCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

116

Amino Acids

11.99

Weight (kDa)

8.03

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	32 - 60	1.5e-08	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37060 AT2G37060 AT2G37060 AT3G53340 AT3G53340 AT3G53340 AT3G53340 AT3G53340
fragaria_vesca	FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260
malus_domestica	MD04G1104700.v1.1 MD12G1124800.v1.1
prunus_persica	Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1
pyrus_communis	pycom04g09970 pycom12g12320
rosa_chinensis	RchiOBHm_Chr2g0145071 RchiOBHm_Chr3g0468661 RchiOBHm_Chr5g0066261
rosa_laevigata	RLG00000024032 RLG00000024417
rosa_multiflora	Rmu_co8446349.1_g000001 Rmu_sc0009516.1_g000001 Rmu_sc0011538.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010930 Rroxscaffold_6G00412670
rosa_rugosa	Rorug03G0096100 Rorug03G0096200 Rorug03G0096200 Rorug03G0096200
rosa_samantha	Rh1AG429500 Rh1BG152900 Rh2AG054200 Rh2DG539500 Rh3AG144900 Rh3BG167300 Rh3BG326700 Rh3DG166200
rosa_wichuraiana	Rw3G013660 Rw6G026160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	67, 107
AciI	CCGC	8 cut(s)	5, 27, 30, 33, 48, 51, 65, 67
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	301
AfiI	CCNNNNNNNGG	3 cut(s)	29, 146, 335
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	2 cut(s)	246, 290
AluI	AGCT	2 cut(s)	246, 290
Alw21I	GWGCWC	2 cut(s)	60, 248
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	248
Bbv12I	GWGCWC	2 cut(s)	60, 248
BccI	CCATC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	27
BisI	GCNGC	4 cut(s)	28, 31, 49, 52
BlsI	GCNGC	4 cut(s)	29, 32, 50, 53
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	38, 327
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	22, 65, 159, 192
BsaWI	WCCGGW	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 146, 335
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	22, 65, 159, 192
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	3 cut(s)	29, 146, 335
BseMII	CTCAG	1 cut(s)	269
Bsh1236I	CGCG	2 cut(s)	67, 107
Bsh1285I	CGRYCG	2 cut(s)	71, 105
BsiEI	CGRYCG	2 cut(s)	71, 105
BsiHKAI	GWGCWC	2 cut(s)	60, 248
BsiSI	CCGG	2 cut(s)	14, 140
BslI	CCNNNNNNNGG	3 cut(s)	29, 146, 335
BsmAI	GTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	60, 248
Bsp143I	GATC	3 cut(s)	88, 102, 153
Bsp68I	TCGCGA	1 cut(s)	107
BspACI	CCGC	8 cut(s)	5, 27, 30, 33, 48, 51, 65, 67
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	67, 107
BspLI	GGNNCC	2 cut(s)	38, 327
BspPI	GGATC	1 cut(s)	96
BssECI	CCNNGG	4 cut(s)	22, 65, 159, 192
BssMI	GATC	3 cut(s)	88, 102, 153
BssT1I	CCWWGG	2 cut(s)	159, 192
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	62, 149
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	3 cut(s)	225, 255, 340
BstDSI	CCRYGG	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	2 cut(s)	67, 107
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	3 cut(s)	91, 105, 156
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	88, 102, 153
BstMCI	CGRYCG	2 cut(s)	71, 105
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 36, 45, 64, 140, 164
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstUI	CGCG	2 cut(s)	67, 107
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	169
BtuMI	TCGCGA	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	56
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	11
Cfr42I	CCGCGG	1 cut(s)	68
CviJI	RGCY	6 cut(s)	21, 39, 241, 246, 290, 339
CviKI_1	RGCY	6 cut(s)	21, 39, 241, 246, 290, 339
DdeI	CTNAG	3 cut(s)	225, 255, 340
DpnI	GATC	3 cut(s)	90, 104, 155
DpnII	GATC	3 cut(s)	88, 102, 153
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	159, 192
Eco24I	GRGCYC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	159, 192
EcoT38I	GRGCYC	1 cut(s)	248
ErhI	CCWWGG	2 cut(s)	159, 192
FaiI	YATR	3 cut(s)	125, 179, 332
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	4 cut(s)	28, 31, 49, 52
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	4 cut(s)	28, 31, 49, 52
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	4 cut(s)	28, 31, 49, 52
HaeII	RGCGCY	1 cut(s)	137
HapII	CCGG	2 cut(s)	14, 140
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	2 cut(s)	14, 140
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	3 cut(s)	102, 258, 343
Hpy188III	TCNNGA	2 cut(s)	80, 106
HpyAV	CCTTC	2 cut(s)	124, 163
HpyCH4III	ACNGT	2 cut(s)	62, 149
HpyCH4V	TGCA	1 cut(s)	334
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 36, 45, 64, 140, 164
HpyF3I	CTNAG	3 cut(s)	225, 255, 340
HspAI	GCGC	1 cut(s)	134
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	88, 102, 153
LmnI	GCTCC	2 cut(s)	36, 287
LpnPI	CCDG	7 cut(s)	9, 27, 36, 71, 103, 153, 186
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	3 cut(s)	90, 104, 155
MboI	GATC	3 cut(s)	88, 102, 153
MboII	GAAGA	3 cut(s)	89, 139, 213
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	2 cut(s)	60, 248
MluCI	AATT	2 cut(s)	249, 301
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	1 cut(s)	175
MspA1I	CMGCKG	2 cut(s)	48, 67
MspI	CCGG	2 cut(s)	14, 140
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	2 cut(s)	67, 107
MwoI	GCNNNNNNNGC	6 cut(s)	27, 36, 45, 64, 140, 164
NdeII	GATC	3 cut(s)	88, 102, 153
NlaIV	GGNNCC	2 cut(s)	38, 327
NmeAIII	GCCGAG	1 cut(s)	267
NruI	TCGCGA	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	29, 32, 50, 53
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	38, 327
PspPI	GGNCC	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	105
RruI	TCGCGA	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	248
SacII	CCGCGG	1 cut(s)	68
SatI	GCNGC	4 cut(s)	28, 31, 49, 52
Sau3AI	GATC	3 cut(s)	88, 102, 153
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	60, 248
SetI	ASST	4 cut(s)	13, 248, 274, 292
SfaNI	GCATC	1 cut(s)	154
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	2 cut(s)	249, 301
SsiI	CCGC	8 cut(s)	5, 27, 30, 33, 48, 51, 65, 67
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	2 cut(s)	159, 192
TaaI	ACNGT	2 cut(s)	62, 149
TaqI	TCGA	2 cut(s)	71, 79
TasI	AATT	2 cut(s)	249, 301
TauI	GCSGC	4 cut(s)	30, 33, 51, 54
TspDTI	ATGAA	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	11
XagI	CCTNNNNNAGG	1 cut(s)	333
XapI	RAATTY	1 cut(s)	301
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.