Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001854

Physical Location & Seq

Genomic Coordinates Forward (+)

9505483 .. 9509008

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15260.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGGAAGGTCCAGCGAGCCCCGGCGGCGGCGGGAGCCACGACAGCGGCGAGCACAGTCCCCGATCGAATGTCCGGGAGCAGGATCGGTATCTTCCGATCGCGAATATTAGCCGGATTATGAAGAAGGCGCTTCCGGCGAACGGTAAGATCGCTAAGGATGCGAAGGAGACTGTGCAGGAGTGCGTTTCAGAGTTCATCAGCTTCATCACCAGCGAGGCGAGCGACAAGTGCCAGAGGGAAAAGAGGAAGACGATTAATGGTGACGACTTGCTTTGGGCTATGGCGACTTTAGGTTTCGAAGACTACATTGATCCTCTCAAGGTTTACCTTGCGAAATACAGAGAGATGGAGGGTGACACCAAGGGTTCAGGCAAGGGTGGAGACTCTTCTTCTAAGAAAGAAGCTCAGCCAAGTGCCATTGCTCAGATTCCTCACCAAGGTTCTTTCTCTCAAGGAGCTACTTACTCAAATTCTCAAACCCAACAAATGATGGTTCATATGCAAGGCTCGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

173

Amino Acids

18.66

Weight (kDa)

6.11

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	18 - 95	2.8e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	31 - 95	9.3e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37060 AT2G37060 AT2G37060 AT3G53340 AT3G53340 AT3G53340 AT3G53340 AT3G53340
fragaria_vesca	FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260
malus_domestica	MD04G1104700.v1.1 MD12G1124800.v1.1
prunus_persica	Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1
pyrus_communis	pycom04g09970 pycom12g12320
rosa_chinensis	RchiOBHm_Chr2g0145071 RchiOBHm_Chr3g0468661 RchiOBHm_Chr5g0066261
rosa_laevigata	RLG00000024032 RLG00000024417
rosa_multiflora	Rmu_co8446349.1_g000001 Rmu_sc0009516.1_g000001 Rmu_sc0011538.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010930 Rroxscaffold_6G00412670
rosa_rugosa	Rorug03G0096100 Rorug03G0096200 Rorug03G0096200 Rorug03G0096200
rosa_samantha	Rh1AG429500 Rh1BG152900 Rh2AG054200 Rh2DG539500 Rh3AG144900 Rh3BG167300 Rh3BG326700 Rh3DG166200
rosa_wichuraiana	Rw3G013660 Rw6G026160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	104
AciI	CCGC	5 cut(s)	5, 27, 30, 33, 48
AclWI	GGATC	2 cut(s)	93, 308
AcsI	RAATTY	1 cut(s)	472
AfiI	CCNNNNNNNGG	4 cut(s)	29, 82, 143, 440
AluBI	AGCT	3 cut(s)	204, 407, 461
AluI	AGCT	3 cut(s)	204, 407, 461
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	2 cut(s)	164, 378
AlwI	GGATC	2 cut(s)	93, 308
ApoI	RAATTY	1 cut(s)	472
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	2 cut(s)	24, 77
AsuHPI	GGTGA	4 cut(s)	202, 275, 368, 428
AsuII	TTCGAA	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	257, 309
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	2 cut(s)	343, 487
BcnI	CCSGG	2 cut(s)	24, 77
BcoDI	GTCTC	2 cut(s)	164, 378
BfoI	RGCGCY	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	27
BisI	GCNGC	3 cut(s)	28, 31, 49
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	3 cut(s)	29, 32, 50
Bme1390I	CCNGG	2 cut(s)	24, 77
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	2 cut(s)	24, 77
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	2 cut(s)	257, 309
Bpu10I	CCTNAGC	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	305, 438
BpuMI	CCSGG	2 cut(s)	24, 77
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	22, 363, 439
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 82, 143, 440
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	90
BseDI	CCNNGG	3 cut(s)	22, 363, 439
BseGI	GGATG	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	4 cut(s)	29, 82, 143, 440
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	422, 440
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	2 cut(s)	68, 102
BsiEI	CGRYCG	2 cut(s)	68, 102
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	4 cut(s)	24, 76, 115, 137
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	4 cut(s)	29, 82, 143, 440
BsmAI	GTCTC	2 cut(s)	164, 378
BsmFI	GGGAC	1 cut(s)	45
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	23, 57
Bsp143I	GATC	5 cut(s)	65, 85, 99, 150, 313
Bsp1720I	GCTNAGC	1 cut(s)	408
Bsp68I	TCGCGA	1 cut(s)	104
BspACI	CCGC	5 cut(s)	5, 27, 30, 33, 48
BspCNI	CTCAG	2 cut(s)	421, 439
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	93, 308
BspT104I	TTCGAA	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	3 cut(s)	22, 363, 439
BssMI	GATC	5 cut(s)	65, 85, 99, 150, 313
BssT1I	CCWWGG	2 cut(s)	363, 439
Bst4CI	ACNGT	3 cut(s)	59, 146, 175
Bst6I	CTCTTC	1 cut(s)	394
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	3 cut(s)	19, 53, 223
BstDEI	CTNAG	4 cut(s)	156, 396, 408, 426
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	5 cut(s)	68, 88, 102, 153, 316
BstMAI	GTCTC	2 cut(s)	164, 378
BstMBI	GATC	5 cut(s)	65, 85, 99, 150, 313
BstMCI	CGRYCG	2 cut(s)	68, 102
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 36, 45, 137, 161, 222, 231
BstSCI	CCNGG	2 cut(s)	22, 75
BstUI	CGCG	1 cut(s)	104
BstV2I	GAAGAC	2 cut(s)	257, 309
BtsCI	GGATG	1 cut(s)	166
BtuMI	TCGCGA	1 cut(s)	104
Cac8I	GCNNGC	3 cut(s)	19, 53, 223
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	11
CviJI	RGCY	9 cut(s)	21, 39, 114, 204, 281, 407, 412, 461, 510
CviKI_1	RGCY	9 cut(s)	21, 39, 114, 204, 281, 407, 412, 461, 510
DdeI	CTNAG	4 cut(s)	156, 396, 408, 426
DpnI	GATC	5 cut(s)	67, 87, 101, 152, 315
DpnII	GATC	5 cut(s)	65, 85, 99, 150, 313
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	363, 439
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	11
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	363, 439
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	2 cut(s)	363, 439
FaiI	YATR	4 cut(s)	122, 284, 501, 503
FaqI	GGGAC	1 cut(s)	45
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	501
Fnu4HI	GCNGC	3 cut(s)	28, 31, 49
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	28, 31, 49
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	28, 31, 49
HaeII	RGCGCY	1 cut(s)	134
HapII	CCGG	4 cut(s)	24, 76, 115, 137
HhaI	GCGC	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	2 cut(s)	386, 430
HpaII	CCGG	4 cut(s)	24, 76, 115, 137
HphI	GGTGA	4 cut(s)	202, 275, 368, 428
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	4 cut(s)	99, 193, 429, 514
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	2 cut(s)	121, 160
HpyCH4III	ACNGT	3 cut(s)	59, 146, 175
HpyCH4V	TGCA	2 cut(s)	178, 505
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 36, 45, 137, 161, 222, 231
HpyF3I	CTNAG	4 cut(s)	156, 396, 408, 426
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	5 cut(s)	65, 85, 99, 150, 313
LmnI	GCTCC	3 cut(s)	36, 79, 458
LweI	GCATC	1 cut(s)	151
MaeIII	GTNAC	2 cut(s)	263, 356
MalI	GATC	5 cut(s)	67, 87, 101, 152, 315
MboI	GATC	5 cut(s)	65, 85, 99, 150, 313
MboII	GAAGA	6 cut(s)	86, 136, 262, 314, 381, 384
MhlI	GDGCHC	2 cut(s)	23, 57
MluCI	AATT	1 cut(s)	472
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	6 cut(s)	211, 231, 240, 327, 346, 444
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	4 cut(s)	24, 76, 115, 137
MspR9I	CCNGG	2 cut(s)	24, 77
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	7 cut(s)	27, 36, 45, 137, 161, 222, 231
NciI	CCSGG	2 cut(s)	24, 77
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	5 cut(s)	65, 85, 99, 150, 313
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	2 cut(s)	263, 356
NruI	TCGCGA	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	430
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	29, 32, 50
Ple19I	CGATCG	2 cut(s)	68, 102
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	11
PvuI	CGATCG	2 cut(s)	68, 102
RruI	TCGCGA	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	3 cut(s)	28, 31, 49
Sau3AI	GATC	5 cut(s)	65, 85, 99, 150, 313
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	24, 77
SduI	GDGCHC	2 cut(s)	23, 57
SetI	ASST	8 cut(s)	13, 206, 298, 327, 333, 409, 445, 463
SfaNI	GCATC	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	300
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	320, 453
SmoI	CTYRAG	2 cut(s)	320, 453
Sse9I	AATT	1 cut(s)	472
SsiI	CCGC	5 cut(s)	5, 27, 30, 33, 48
SspI	AATATT	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	22, 75
StyI	CCWWGG	2 cut(s)	363, 439
TaaI	ACNGT	3 cut(s)	59, 146, 175
TaqI	TCGA	2 cut(s)	68, 300
TasI	AATT	1 cut(s)	472
TauI	GCSGC	3 cut(s)	30, 33, 51
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseFI	GTSAC	2 cut(s)	263, 356
Tsp45I	GTSAC	2 cut(s)	263, 356
TspDTI	ATGAA	4 cut(s)	137, 187, 196, 488
VpaK11BI	GGWCC	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	258
XagI	CCTNNNNNAGG	1 cut(s)	438
XapI	RAATTY	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.