Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001854

Physical Location & Seq

Genomic Coordinates Reverse (-)

33980919 .. 33982101

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG326700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCCATTGCTAGCCTCGTGTTGCTTTCGCTTTGGCGCTTGGAGTGCCACCTTGGACATAGATCCCTATGGTTGCTGTCGGGGAAGGTAGTCGGCATGGATGGAGGTTGGGGACGGCGAGTTTGGGTCTCCTCGGATTACTGCTGGTTCGCAGCGGCTAGTTTTGTTGTCTCTGTTCCCGATCTGGTGTTTGCAAAGGCCAACGTTGGTGATTGGGTTGCTGATTGGATGACCGATCCAGGCCAGAATGCTCCGGGGATGATGGCTGCGAGGTCTGACATTGGTGTCGGAGCAGAGTGCGGCGAAGATCGCTGGCAGAACTGGGGTGAGCGCGGGCGTATGCATGTGCTGCACTATTTGCATCACTACCAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

14.08

Weight (kDa)

6.26

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37060 AT2G37060 AT2G37060 AT3G53340 AT3G53340 AT3G53340 AT3G53340 AT3G53340
fragaria_vesca	FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260
malus_domestica	MD04G1104700.v1.1 MD12G1124800.v1.1
prunus_persica	Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1
pyrus_communis	pycom04g09970 pycom12g12320
rosa_chinensis	RchiOBHm_Chr2g0145071 RchiOBHm_Chr3g0468661 RchiOBHm_Chr5g0066261
rosa_laevigata	RLG00000024032 RLG00000024417
rosa_multiflora	Rmu_co8446349.1_g000001 Rmu_sc0009516.1_g000001 Rmu_sc0011538.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010930 Rroxscaffold_6G00412670
rosa_rugosa	Rorug03G0096100 Rorug03G0096200 Rorug03G0096200 Rorug03G0096200
rosa_samantha	Rh1AG429500 Rh1BG152900 Rh2AG054200 Rh2DG539500 Rh3AG144900 Rh3BG167300 Rh3BG326700 Rh3DG166200
rosa_wichuraiana	Rw3G013660 Rw6G026160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccII	CGCG	1 cut(s)	333
AciI	CCGC	3 cut(s)	155, 300, 333
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	2 cut(s)	57, 230
AcoI	YGGCCR	1 cut(s)	3
AjnI	CCWGG	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	133, 175
AlwI	GGATC	2 cut(s)	57, 230
AoxI	GGCC	3 cut(s)	3, 198, 241
ApeKI	GCWGC	3 cut(s)	152, 266, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AspLEI	GCGC	2 cut(s)	39, 333
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	221, 338
AsuNHI	GCTAGC	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	164, 253, 336
BccI	CCATC	2 cut(s)	95, 256
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	133, 175
BfaI	CTAG	2 cut(s)	12, 159
BfoI	RGCGCY	1 cut(s)	40
BisI	GCNGC	5 cut(s)	153, 156, 267, 301, 350
BlsI	GCNGC	5 cut(s)	154, 157, 268, 302, 351
Bme1390I	CCNGG	2 cut(s)	240, 255
BmrFI	CCNGG	2 cut(s)	240, 255
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	370
BmtI	GCTAGC	1 cut(s)	15
BmuI	ACTGGG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	52, 132, 254
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	52, 132, 254
BseGI	GGATG	3 cut(s)	106, 234, 264
BseMI	GCAATG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	3 cut(s)	164, 253, 336
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	3 cut(s)	5, 200, 243
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	126
BsmAI	GTCTC	2 cut(s)	133, 175
BsmFI	GGGAC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	5, 200, 243
Bso31I	GGTCTC	1 cut(s)	133
Bsp143I	GATC	4 cut(s)	62, 181, 235, 307
BspACI	CCGC	3 cut(s)	155, 300, 333
BspANI	GGCC	3 cut(s)	5, 200, 243
BspFNI	CGCG	1 cut(s)	333
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	57, 230
BspTNI	GGTCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	52, 132, 254
BssMI	GATC	4 cut(s)	62, 181, 235, 307
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	240
BstAPI	GCANNNNNTGC	2 cut(s)	349, 358
BstC8I	GCNNGC	3 cut(s)	13, 314, 335
BstF5I	GGATG	3 cut(s)	106, 234, 264
BstFNI	CGCG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	2 cut(s)	39, 333
BstKTI	GATC	4 cut(s)	65, 184, 238, 310
BstMAI	GTCTC	2 cut(s)	133, 175
BstMBI	GATC	4 cut(s)	62, 181, 235, 307
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 309, 349, 358
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	238, 253
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	164, 253, 336
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	3 cut(s)	5, 200, 243
BtsCI	GGATG	3 cut(s)	106, 234, 264
Cac8I	GCNNGC	3 cut(s)	13, 314, 335
CfoI	GCGC	2 cut(s)	39, 333
CviAII	CATG	2 cut(s)	97, 344
CviJI	RGCY	6 cut(s)	5, 15, 158, 200, 243, 266
CviKI_1	RGCY	6 cut(s)	5, 15, 158, 200, 243, 266
DpnI	GATC	4 cut(s)	64, 183, 237, 309
DpnII	GATC	4 cut(s)	62, 181, 235, 307
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	2 cut(s)	100, 347
FaiI	YATR	5 cut(s)	60, 70, 98, 341, 345
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	2 cut(s)	96, 343
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	5 cut(s)	153, 156, 267, 301, 350
FokI	GGATG	3 cut(s)	113, 241, 271
Fsp4HI	GCNGC	5 cut(s)	153, 156, 267, 301, 350
FspBI	CTAG	2 cut(s)	12, 159
GlaI	GCGC	2 cut(s)	38, 332
GluI	GCNGC	5 cut(s)	153, 156, 267, 301, 350
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	3 cut(s)	5, 200, 243
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	2 cut(s)	39, 333
Hin1II	CATG	2 cut(s)	100, 347
Hin6I	GCGC	2 cut(s)	37, 331
HinP1I	GCGC	2 cut(s)	37, 331
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	221, 338
Hpy188I	TCNGA	3 cut(s)	136, 277, 290
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	4 cut(s)	194, 343, 352, 361
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 309, 349, 358
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	100, 347
HspAI	GCGC	2 cut(s)	37, 331
Kzo9I	GATC	4 cut(s)	62, 181, 235, 307
LmnI	GCTCC	2 cut(s)	256, 290
LpnPI	CCDG	8 cut(s)	130, 170, 225, 252, 257, 267, 298, 307
Lsp1109I	GCAGC	3 cut(s)	164, 253, 336
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	12, 159
MaeII	ACGT	1 cut(s)	204
MalI	GATC	4 cut(s)	64, 183, 237, 309
MboI	GATC	4 cut(s)	62, 181, 235, 307
MboII	GAAGA	1 cut(s)	317
MflI	RGATCY	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	4 cut(s)	26, 98, 142, 264
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	376
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	240, 255
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	45, 309, 349, 358
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	4 cut(s)	62, 181, 235, 307
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	100, 347
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	347
PctI	GAATGC	1 cut(s)	253
PkrI	GCNGC	5 cut(s)	154, 157, 268, 302, 351
Psp1406I	AACGTT	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	376
SatI	GCNGC	5 cut(s)	153, 156, 267, 301, 350
Sau3AI	GATC	4 cut(s)	62, 181, 235, 307
ScrFI	CCNGG	2 cut(s)	240, 255
SetI	ASST	5 cut(s)	54, 90, 109, 207, 275
SfaNI	GCATC	1 cut(s)	370
SsiI	CCGC	3 cut(s)	155, 300, 333
SspI	AATATT	1 cut(s)	374
SspMI	CTAG	2 cut(s)	12, 159
StyD4I	CCNGG	2 cut(s)	238, 253
StyI	CCWWGG	1 cut(s)	52
TaiI	ACGT	1 cut(s)	207
TaqII	GACCGA	1 cut(s)	248
TauI	GCSGC	2 cut(s)	158, 303
Tru1I	TTAA	1 cut(s)	376
Tru9I	TTAA	1 cut(s)	376
TseI	GCWGC	3 cut(s)	152, 266, 349
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	2 cut(s)	12, 159
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.