Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001854

Physical Location & Seq

Genomic Coordinates Forward (+)

13948012 .. 13954938

Gene Structure 6927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGTGTTGGGAAGGCGGCGGTGCTGCTCGAAGTGTTGGGCGGGTCGATTCCGGGTTGGTCTCGTGATGGCAAGGACTTGGCGGTGATGCGTCTTTTGTTGCGGGGCTCATCCTTCTTCCGGATGACATATCTTTTGCTAAAGGGGATCCTACATCTTGTAAGATTTCATGAGTGGTTTGCATCTCAAGGTTTCAGGAACCAGAGTTCGTGGCGACGACTAGGTTTGCTTGGTGGCGACCTTGTATTCTCAACCAAGAAGGGGGTATCTTCACCTTCATCTTGGCTATATCTTGGTGCAGCGGGGCTCGCTCGACGATGTTTGTTGTACGTTGGCTGCGGCCTTATTCTCTTTGTTGTGATCGCGGTTTGTGCTCATAACAATGGTGGTTTGGCGACCGACATGGAGTCGATGCGGGCTTGGGACCGGGCTGCAGGTTCGTTGAAGACTACGAAGACGGCATCGGTGTCGGGGCCTTTATGCACTGCGATGGTGGTCTCTGGCTGGGTTGGGATATGTCAATTTCTATGGAGGACAAAGGGATTGGTGGTGATCCCAATTCTTCTCTGGTGGGAACGGTTGATGTTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.52

Weight (kDa)

10.25

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37060 AT2G37060 AT2G37060 AT3G53340 AT3G53340 AT3G53340 AT3G53340 AT3G53340
fragaria_vesca	FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260
malus_domestica	MD04G1104700.v1.1 MD12G1124800.v1.1
prunus_persica	Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1
pyrus_communis	pycom04g09970 pycom12g12320
rosa_chinensis	RchiOBHm_Chr2g0145071 RchiOBHm_Chr3g0468661 RchiOBHm_Chr5g0066261
rosa_laevigata	RLG00000024032 RLG00000024417
rosa_multiflora	Rmu_co8446349.1_g000001 Rmu_sc0009516.1_g000001 Rmu_sc0011538.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010930 Rroxscaffold_6G00412670
rosa_rugosa	Rorug03G0096100 Rorug03G0096200 Rorug03G0096200 Rorug03G0096200
rosa_samantha	Rh1AG429500 Rh1BG152900 Rh2AG054200 Rh2DG539500 Rh3AG144900 Rh3BG167300 Rh3BG326700 Rh3DG166200
rosa_wichuraiana	Rw3G013660 Rw6G026160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
AccII	CGCG	1 cut(s)	365
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	9 cut(s)	17, 20, 42, 83, 103, 302, 339, 365, 415
AclWI	GGATC	3 cut(s)	142, 155, 547
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	120, 261
AgsI	TTSAA	1 cut(s)	445
AhdI	GACNNNNNGTC	1 cut(s)	406
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	66, 502
AlwI	GGATC	3 cut(s)	142, 155, 547
Aor13HI	TCCGGA	1 cut(s)	120
AoxI	GGCC	3 cut(s)	340, 473, 588
ApeKI	GCWGC	4 cut(s)	25, 299, 336, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AspS9I	GGNCC	2 cut(s)	424, 473
AsuC2I	CCSGG	2 cut(s)	54, 428
AsuHPI	GGTGA	3 cut(s)	97, 264, 562
AvaII	GGWCC	1 cut(s)	424
BamHI	GGATCC	1 cut(s)	147
BanII	GRGCYC	2 cut(s)	110, 309
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	2 cut(s)	452, 461
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	4 cut(s)	12, 311, 323, 418
BccI	CCATC	2 cut(s)	62, 484
BceAI	ACGGC	1 cut(s)	474
BcgI	CGANNNNNNTGC	2 cut(s)	450, 484
BcnI	CCSGG	2 cut(s)	54, 428
BcoDI	GTCTC	2 cut(s)	66, 502
BfaI	CTAG	2 cut(s)	221, 592
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	425
BisI	GCNGC	6 cut(s)	18, 26, 300, 337, 340, 432
BlsI	GCNGC	6 cut(s)	19, 27, 301, 338, 341, 433
Bme1390I	CCNGG	2 cut(s)	54, 428
Bme18I	GGWCC	1 cut(s)	424
BmeRI	GACNNNNNGTC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	424, 473
BmiI	GGNNCC	4 cut(s)	149, 200, 425, 474
BmrFI	CCNGG	2 cut(s)	54, 428
BmsI	GCATC	4 cut(s)	78, 191, 402, 470
BpiI	GAAGAC	2 cut(s)	452, 461
BpuEI	CTTGAG	1 cut(s)	171
BpuMI	CCSGG	2 cut(s)	54, 428
BsaI	GGTCTC	2 cut(s)	66, 502
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 261
BseAI	TCCGGA	1 cut(s)	120
BseGI	GGATG	2 cut(s)	110, 129
BseLI	CCNNNNNNNGG	2 cut(s)	120, 261
BseXI	GCAGC	4 cut(s)	12, 311, 323, 418
BseYI	CCCAGC	1 cut(s)	504
BsgI	GTGCAG	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	342, 475, 590
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	53, 121, 427
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	120, 261
BsmAI	GTCTC	2 cut(s)	66, 502
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	342, 475, 590
Bso31I	GGTCTC	2 cut(s)	66, 502
Bsp1286I	GDGCHC	3 cut(s)	110, 309, 376
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	147, 360, 552
BspACI	CCGC	9 cut(s)	17, 20, 42, 83, 103, 302, 339, 365, 415
BspANI	GGCC	3 cut(s)	342, 475, 590
BspEI	TCCGGA	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	4 cut(s)	149, 200, 425, 474
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	3 cut(s)	142, 155, 547
BspTNI	GGTCTC	2 cut(s)	66, 502
BssMI	GATC	3 cut(s)	147, 360, 552
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	309, 417
BstF5I	GGATG	2 cut(s)	110, 129
BstFNI	CGCG	1 cut(s)	365
BstKTI	GATC	3 cut(s)	150, 363, 555
BstMAI	GTCTC	2 cut(s)	66, 502
BstMBI	GATC	3 cut(s)	147, 360, 552
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 371
BstSCI	CCNGG	2 cut(s)	52, 426
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	4 cut(s)	12, 311, 323, 418
BstV2I	GAAGAC	2 cut(s)	452, 461
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	342, 475, 590
BtgZI	GCGATG	1 cut(s)	503
BtsCI	GGATG	2 cut(s)	110, 129
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	483
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	2 cut(s)	309, 417
CciI	TCATGA	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	424, 473
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	170, 403
CviQI	GTAC	1 cut(s)	328
DpnI	GATC	3 cut(s)	149, 362, 554
DpnII	GATC	3 cut(s)	147, 360, 552
DriI	GACNNNNNGTC	1 cut(s)	406
Eam1105I	GACNNNNNGTC	1 cut(s)	406
Eco24I	GRGCYC	2 cut(s)	110, 309
Eco31I	GGTCTC	2 cut(s)	66, 502
Eco47I	GGWCC	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	473
EcoT38I	GRGCYC	2 cut(s)	110, 309
FaeI	CATG	2 cut(s)	173, 406
FaiI	YATR	8 cut(s)	130, 171, 289, 378, 404, 481, 517, 529
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	2 cut(s)	169, 402
FauI	CCCGC	4 cut(s)	35, 96, 295, 408
Fnu4HI	GCNGC	6 cut(s)	18, 26, 300, 337, 340, 432
FokI	GGATG	2 cut(s)	97, 136
FriOI	GRGCYC	2 cut(s)	110, 309
Fsp4HI	GCNGC	6 cut(s)	18, 26, 300, 337, 340, 432
FspBI	CTAG	2 cut(s)	221, 592
GluI	GCNGC	6 cut(s)	18, 26, 300, 337, 340, 432
GsaI	CCCAGC	1 cut(s)	508
HaeIII	GGCC	3 cut(s)	342, 475, 590
HapII	CCGG	3 cut(s)	53, 121, 427
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	173, 406
HinfI	GANTC	2 cut(s)	49, 407
HpaII	CCGG	3 cut(s)	53, 121, 427
HphI	GGTGA	3 cut(s)	97, 264, 562
Hpy188III	TCNNGA	4 cut(s)	65, 121, 170, 196
Hpy99I	CGWCG	2 cut(s)	219, 318
HpyAV	CCTTC	4 cut(s)	7, 124, 253, 285
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	4 cut(s)	182, 299, 434, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 371
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	173, 406
Kpn2I	TCCGGA	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	147, 360, 552
LpnPI	CCDG	9 cut(s)	66, 134, 181, 215, 420, 440, 486, 490, 553
Lsp1109I	GCAGC	4 cut(s)	12, 311, 323, 418
LweI	GCATC	4 cut(s)	78, 191, 402, 470
MaeI	CTAG	2 cut(s)	221, 592
MaeII	ACGT	1 cut(s)	330
MalI	GATC	3 cut(s)	149, 362, 554
MboI	GATC	3 cut(s)	147, 360, 552
MboII	GAAGA	5 cut(s)	109, 261, 457, 466, 554
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	3 cut(s)	110, 309, 376
MluCI	AATT	2 cut(s)	521, 558
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	1 cut(s)	525
MroI	TCCGGA	1 cut(s)	120
MslI	CAYNNNNRTG	2 cut(s)	381, 488
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	3 cut(s)	53, 121, 427
MspR9I	CCNGG	2 cut(s)	54, 428
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	308, 371
NciI	CCSGG	2 cut(s)	54, 428
NdeII	GATC	3 cut(s)	147, 360, 552
NlaIII	CATG	2 cut(s)	173, 406
NlaIV	GGNNCC	4 cut(s)	149, 200, 425, 474
PagI	TCATGA	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	6 cut(s)	19, 27, 301, 338, 341, 433
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	504
PspN4I	GGNNCC	4 cut(s)	149, 200, 425, 474
PspPI	GGNCC	2 cut(s)	424, 473
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	381, 488
SatI	GCNGC	6 cut(s)	18, 26, 300, 337, 340, 432
Sau3AI	GATC	3 cut(s)	147, 360, 552
Sau96I	GGNCC	2 cut(s)	424, 473
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	2 cut(s)	54, 428
SduI	GDGCHC	3 cut(s)	110, 309, 376
SetI	ASST	6 cut(s)	193, 226, 243, 277, 333, 439
SfaNI	GCATC	4 cut(s)	78, 191, 402, 470
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	381, 488
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	521, 558
SsiI	CCGC	9 cut(s)	17, 20, 42, 83, 103, 302, 339, 365, 415
SspMI	CTAG	2 cut(s)	221, 592
StyD4I	CCNGG	2 cut(s)	52, 426
TaaI	ACNGT	1 cut(s)	579
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	4 cut(s)	30, 47, 313, 410
TaqII	GACCGA	1 cut(s)	413
TasI	AATT	2 cut(s)	521, 558
TauI	GCSGC	2 cut(s)	20, 342
TfiI	GAWTC	1 cut(s)	49
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	4 cut(s)	25, 299, 336, 431
TspDTI	ATGAA	2 cut(s)	158, 267
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	564
XspI	CTAG	2 cut(s)	221, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.