Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001854

Physical Location & Seq

Genomic Coordinates Reverse (-)

49562099 .. 49564984

Gene Structure 2886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTTCTCTCTCTAACTCTCGCAATAGAGGTAGCTGGGCGGCGGCTAGGTTTTGCGGGTGGCGGCTCTGTACTTTCACCCAAGAATGAGGTCTTGTCACTTTCATCTGGGTTGTTCCTTGGTAACGGCGGGCGTGCTCGACGGTTCCTGTATCTTGTAGGTTTCGGCCTTATTTTCTTTGCTGTGTTCGTGGCTTGTGTCCGCAGCAATGGTGGTGTGGTTAGTAAGGAGGCGATCTGGGGTCATCCCCACGGGTCTCAACAGATGGTGTTTGTAAAGGCTACTGCTGGTGATTGGGTTGCTGATTGGATGATTAATCCAGGTCAACGTGCTCTGGGGATGATGGCGGCAAGGGCCGGCATCGGTGTTTGCTCAGCTTGCGGCGAAGATCGCTGGCAGAACTGGGGTGATAATGGGTTTATGGTGCTGTGCTCGTCATTGGAGCTAGTTCGCCCAGCATCGGATCCGCGTGCTACTAGTGGTGGTGGAAGAGCGGGTGTCGGTCTCCGGCGAGCAGTGCCTGGTGGCGAAGGCAGGGCTGTCTCCTCACTTGGTGTTTACCCTCGGTGGGTTGACTGGGACTGGACTCGTGTATCTATTTCATATTTTTTTGGAAAACATGTGCGTACGTGCCTCCTCTTGACTCTATCAGGTTATGCCTCCCCAGCCCCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

23.87

Weight (kDa)

9.88

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37060 AT2G37060 AT2G37060 AT3G53340 AT3G53340 AT3G53340 AT3G53340 AT3G53340
fragaria_vesca	FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260
malus_domestica	MD04G1104700.v1.1 MD12G1124800.v1.1
prunus_persica	Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1
pyrus_communis	pycom04g09970 pycom12g12320
rosa_chinensis	RchiOBHm_Chr2g0145071 RchiOBHm_Chr3g0468661 RchiOBHm_Chr5g0066261
rosa_laevigata	RLG00000024032 RLG00000024417
rosa_multiflora	Rmu_co8446349.1_g000001 Rmu_sc0009516.1_g000001 Rmu_sc0011538.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010930 Rroxscaffold_6G00412670
rosa_rugosa	Rorug03G0096100 Rorug03G0096200 Rorug03G0096200 Rorug03G0096200
rosa_samantha	Rh1AG429500 Rh1BG152900 Rh2AG054200 Rh2DG539500 Rh3AG144900 Rh3BG167300 Rh3BG326700 Rh3DG166200
rosa_wichuraiana	Rw3G013660 Rw6G026160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	494
AccII	CGCG	1 cut(s)	469
AclWI	GGATC	2 cut(s)	458, 471
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	2 cut(s)	72, 628
AfiI	CCNNNNNNNGG	2 cut(s)	460, 568
AflIII	ACRYGT	1 cut(s)	619
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	2 cut(s)	319, 520
AluBI	AGCT	3 cut(s)	35, 377, 445
AluI	AGCT	3 cut(s)	35, 377, 445
Alw21I	GWGCWC	3 cut(s)	139, 334, 434
Alw26I	GTCTC	3 cut(s)	261, 509, 547
AlwI	GGATC	2 cut(s)	458, 471
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	166, 354
ApeKI	GCWGC	1 cut(s)	204
AseI	ATTAAT	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	3 cut(s)	69, 302, 419
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BamHI	GGATCC	1 cut(s)	463
BauI	CACGAG	1 cut(s)	588
Bbv12I	GWGCWC	3 cut(s)	139, 334, 434
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	259, 337
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	2 cut(s)	321, 522
BcoDI	GTCTC	3 cut(s)	261, 509, 547
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	3 cut(s)	47, 446, 477
BisI	GCNGC	6 cut(s)	41, 44, 64, 205, 348, 382
BlpI	GCTNAGC	1 cut(s)	373
BlsI	GCNGC	6 cut(s)	42, 45, 65, 206, 349, 383
Bme1390I	CCNGG	2 cut(s)	321, 522
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	2 cut(s)	146, 465
BmrFI	CCNGG	2 cut(s)	321, 522
BmrI	ACTGGG	2 cut(s)	412, 586
BmsI	GCATC	2 cut(s)	369, 467
BmuI	ACTGGG	2 cut(s)	412, 586
Bpu1102I	GCTNAGC	1 cut(s)	373
BsaAI	YACGTR	1 cut(s)	630
BsaI	GGTCTC	2 cut(s)	261, 509
BsaJI	CCNNGG	3 cut(s)	118, 250, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	460, 568
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	3 cut(s)	407, 581, 587
Bse3DI	GCAATG	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	321, 522
BseDI	CCNNGG	3 cut(s)	118, 250, 563
BseGI	GGATG	3 cut(s)	244, 315, 345
BseLI	CCNNNNNNNGG	2 cut(s)	460, 568
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	3 cut(s)	407, 581, 587
BseRI	GAGGAG	2 cut(s)	535, 626
BseXI	GCAGC	1 cut(s)	216
BseYI	CCCAGC	3 cut(s)	35, 454, 664
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	2 cut(s)	168, 356
BsiHKAI	GWGCWC	3 cut(s)	139, 334, 434
BsiSI	CCGG	2 cut(s)	357, 508
BsiWI	CGTACG	1 cut(s)	626
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	2 cut(s)	460, 568
BsmAI	GTCTC	3 cut(s)	261, 509, 547
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	168, 356
Bso31I	GGTCTC	2 cut(s)	261, 509
Bsp1286I	GDGCHC	3 cut(s)	139, 334, 434
Bsp143I	GATC	3 cut(s)	234, 388, 463
Bsp1720I	GCTNAGC	1 cut(s)	373
BspANI	GGCC	2 cut(s)	168, 356
BspCNI	CTCAG	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	146, 465
BspPI	GGATC	2 cut(s)	458, 471
BspQI	GCTCTTC	1 cut(s)	484
BspTNI	GGTCTC	2 cut(s)	261, 509
BsrBI	CCGCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	3 cut(s)	407, 581, 587
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	3 cut(s)	118, 250, 563
BssMI	GATC	3 cut(s)	234, 388, 463
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	321, 522
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	630
BstC8I	GCNNGC	7 cut(s)	131, 135, 358, 379, 395, 471, 513
BstDEI	CTNAG	1 cut(s)	373
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	244, 315, 345
BstFNI	CGCG	1 cut(s)	469
BstKTI	GATC	3 cut(s)	237, 391, 466
BstMAI	GTCTC	3 cut(s)	261, 509, 547
BstMBI	GATC	3 cut(s)	234, 388, 463
BstMWI	GCNNNNNNNGC	5 cut(s)	353, 378, 390, 517, 665
BstNI	CCWGG	2 cut(s)	321, 522
BstNSI	RCATGY	1 cut(s)	623
BstSCI	CCNGG	2 cut(s)	319, 520
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	168, 356
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	244, 315, 345
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	7 cut(s)	131, 135, 358, 379, 395, 471, 513
CaiI	CAGNNNCTG	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	71, 627
CviAII	CATG	1 cut(s)	620
CviQI	GTAC	2 cut(s)	71, 627
DdeI	CTNAG	1 cut(s)	373
DpnI	GATC	3 cut(s)	236, 390, 465
DpnII	GATC	3 cut(s)	234, 388, 463
DraIII	CACNNNGTG	1 cut(s)	554
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	118
Eco31I	GGTCTC	2 cut(s)	261, 509
EcoRII	CCWGG	2 cut(s)	319, 520
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	1 cut(s)	623
FaiI	YATR	5 cut(s)	422, 604, 621, 657, 676
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	1 cut(s)	619
FauI	CCCGC	3 cut(s)	49, 122, 487
Fnu4HI	GCNGC	6 cut(s)	41, 44, 64, 205, 348, 382
FokI	GGATG	3 cut(s)	231, 322, 352
Fsp4HI	GCNGC	6 cut(s)	41, 44, 64, 205, 348, 382
FspBI	CTAG	3 cut(s)	47, 446, 477
GluI	GCNGC	6 cut(s)	41, 44, 64, 205, 348, 382
GsaI	CCCAGC	3 cut(s)	39, 458, 668
HaeIII	GGCC	2 cut(s)	168, 356
HapII	CCGG	2 cut(s)	357, 508
Hin1II	CATG	1 cut(s)	623
HincII	GTYRAC	2 cut(s)	326, 574
HindII	GTYRAC	2 cut(s)	326, 574
HinfI	GANTC	2 cut(s)	586, 643
HpaII	CCGG	2 cut(s)	357, 508
HphI	GGTGA	3 cut(s)	69, 302, 419
Hpy166II	GTNNAC	3 cut(s)	326, 559, 574
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	1 cut(s)	640
Hpy8I	GTNNAC	3 cut(s)	326, 559, 574
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	2 cut(s)	328, 629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	353, 378, 390, 517, 665
HpyF3I	CTNAG	1 cut(s)	373
HpySE526I	ACGT	2 cut(s)	328, 629
Hsp92II	CATG	1 cut(s)	623
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	234, 388, 463
LguI	GCTCTTC	1 cut(s)	484
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	369, 467
MaeI	CTAG	3 cut(s)	47, 446, 477
MaeII	ACGT	2 cut(s)	328, 629
MaeIII	GTNAC	2 cut(s)	96, 122
MalI	GATC	3 cut(s)	236, 390, 465
MbiI	CCGCTC	1 cut(s)	494
MboI	GATC	3 cut(s)	234, 388, 463
MboII	GAAGA	2 cut(s)	398, 501
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	3 cut(s)	139, 334, 434
MlyI	GAGTC	2 cut(s)	580, 637
MnlI	CCTC	8 cut(s)	22, 82, 223, 556, 573, 644, 647, 670
MroNI	GCCGGC	1 cut(s)	356
MseI	TTAA	1 cut(s)	315
MspI	CCGG	2 cut(s)	357, 508
MspR9I	CCNGG	2 cut(s)	321, 522
MvaI	CCWGG	2 cut(s)	321, 522
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	5 cut(s)	353, 378, 390, 517, 665
NaeI	GCCGGC	1 cut(s)	358
NdeII	GATC	3 cut(s)	234, 388, 463
NgoMIV	GCCGGC	1 cut(s)	356
NlaIII	CATG	1 cut(s)	623
NlaIV	GGNNCC	2 cut(s)	146, 465
NmuCI	GTSAC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	623
PciI	ACATGT	1 cut(s)	619
PciSI	GCTCTTC	1 cut(s)	484
PdiI	GCCGGC	1 cut(s)	358
Pfl23II	CGTACG	1 cut(s)	626
PkrI	GCNGC	6 cut(s)	42, 45, 65, 206, 349, 383
PleI	GAGTC	2 cut(s)	580, 637
PpsI	GAGTC	2 cut(s)	580, 637
Ppu21I	YACGTR	1 cut(s)	630
PscI	ACATGT	1 cut(s)	619
PshBI	ATTAAT	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	319, 520
PspFI	CCCAGC	3 cut(s)	35, 454, 664
PspGI	CCWGG	2 cut(s)	319, 520
PspLI	CGTACG	1 cut(s)	626
PspN4I	GGNNCC	2 cut(s)	146, 465
PspPI	GGNCC	1 cut(s)	354
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	2 cut(s)	72, 628
RsaNI	GTAC	2 cut(s)	71, 627
SapI	GCTCTTC	1 cut(s)	484
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	6 cut(s)	41, 44, 64, 205, 348, 382
Sau3AI	GATC	3 cut(s)	234, 388, 463
Sau96I	GGNCC	1 cut(s)	354
SchI	GAGTC	2 cut(s)	580, 637
ScrFI	CCNGG	2 cut(s)	321, 522
SduI	GDGCHC	3 cut(s)	139, 334, 434
SfaNI	GCATC	2 cut(s)	369, 467
SpeI	ACTAGT	1 cut(s)	476
SspMI	CTAG	3 cut(s)	47, 446, 477
StyD4I	CCNGG	2 cut(s)	319, 520
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	2 cut(s)	331, 632
TaqI	TCGA	1 cut(s)	139
TaqII	GACCGA	1 cut(s)	491
TatI	WGTACW	1 cut(s)	70
TauI	GCSGC	5 cut(s)	43, 46, 66, 350, 384
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	2 cut(s)	93, 591
TspRI	CASTG	1 cut(s)	522
VspI	ATTAAT	1 cut(s)	315
XceI	RCATGY	1 cut(s)	623
XspI	CTAG	3 cut(s)	47, 446, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.