Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001854

Physical Location & Seq

Genomic Coordinates Reverse (-)

24019312 .. 24022272

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G241800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCCGAAGCTCCGGGAAGTCCAGGCGGCGGGAGCCACGAGAGCGGCGGCGACCAGAGCCCGCGCTCGAACGTTCGGGAGCAGGATCGGTATCTCCCGATCGCTAACATTAGTCGGATCATGAAGAAGGCGCTTCCTGCTAATGGCAAAATCGCCAAGGACGCCAAAGAGACCGTGCAGGAATGCGTTTCCGAATTCATCAGCTTCATCACTAGCGAGGCGAGTGACAAGTGCCAGAGAGAGAAGAGGAAGACAATTAATGGCGATGATTTGCTCTGGGCAATGGCTACTTTGGGCTTTGAAGATTATATCGACCCCCTTAAGGTTTACCTCACTAGATACAGAGAGATGGAGGGTGACACCAAGGGTTCAGGGAAGGGTGGAGATTCATCTTCTAAGAAAGATGCTCAGCCAAGTTCAAATGCTCAGATTTCTCGCCAAGGTTCTTTCTCCCAAGGAGGGAATTACTCAAATTCTCAAAATTGTGATGATATGCTCAATGATCATTTGTCTGTGGAAAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

176

Amino Acids

18.96

Weight (kDa)

5.28

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37060 AT2G37060 AT2G37060 AT3G53340 AT3G53340 AT3G53340 AT3G53340 AT3G53340
fragaria_vesca	FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260
malus_domestica	MD04G1104700.v1.1 MD12G1124800.v1.1
prunus_persica	Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1
pyrus_communis	pycom04g09970 pycom12g12320
rosa_chinensis	RchiOBHm_Chr2g0145071 RchiOBHm_Chr3g0468661 RchiOBHm_Chr5g0066261
rosa_laevigata	RLG00000024032 RLG00000024417
rosa_multiflora	Rmu_co8446349.1_g000001 Rmu_sc0009516.1_g000001 Rmu_sc0011538.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010930 Rroxscaffold_6G00412670
rosa_rugosa	Rorug03G0096100 Rorug03G0096200 Rorug03G0096200 Rorug03G0096200
rosa_samantha	Rh1AG429500 Rh1BG152900 Rh2AG054200 Rh2DG539500 Rh3AG144900 Rh3BG167300 Rh3BG326700 Rh3DG166200
rosa_wichuraiana	Rw3G013660 Rw6G026160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	1 cut(s)	64
AciI	CCGC	5 cut(s)	27, 30, 45, 48, 62
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	2 cut(s)	93, 125
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	194, 472
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	4 cut(s)	29, 143, 322, 459
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	302, 420
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	2 cut(s)	11, 204
AluI	AGCT	2 cut(s)	11, 204
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	93, 125
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	194, 472
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	66, 133
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	257
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	213, 336
BfoI	RGCGCY	1 cut(s)	134
BfrI	CTTAAG	1 cut(s)	320
BisI	GCNGC	3 cut(s)	28, 46, 49
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	3 cut(s)	29, 47, 50
Bme1390I	CCNGG	2 cut(s)	15, 24
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	2 cut(s)	15, 24
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	4 cut(s)	156, 363, 439, 454
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 143, 322, 459
Bse3DI	GCAATG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	156, 363, 439, 454
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	4 cut(s)	29, 143, 322, 459
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	422, 440
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	64
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	4 cut(s)	29, 143, 322, 459
BsmAI	GTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	4 cut(s)	85, 99, 117, 502
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	5 cut(s)	27, 30, 45, 48, 62
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	421, 439
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	2 cut(s)	93, 125
BspTI	CTTAAG	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	4 cut(s)	156, 363, 439, 454
BssMI	GATC	4 cut(s)	85, 99, 117, 502
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	4 cut(s)	156, 363, 439, 454
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	3 cut(s)	396, 408, 426
BstFNI	CGCG	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	2 cut(s)	66, 133
BstKTI	GATC	4 cut(s)	88, 102, 120, 505
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	4 cut(s)	85, 99, 117, 502
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 42, 57, 137, 161
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	2 cut(s)	13, 22
BstUI	CGCG	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	62
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	2 cut(s)	66, 133
CseI	GACGC	1 cut(s)	170
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	8 cut(s)	5, 11, 36, 60, 204, 287, 297, 412
CviKI_1	RGCY	8 cut(s)	5, 11, 36, 60, 204, 287, 297, 412
DdeI	CTNAG	3 cut(s)	396, 408, 426
DpnI	GATC	4 cut(s)	87, 101, 119, 504
DpnII	GATC	4 cut(s)	85, 99, 117, 502
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	4 cut(s)	156, 363, 439, 454
Eco24I	GRGCYC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	4 cut(s)	156, 363, 439, 454
EcoT38I	GRGCYC	1 cut(s)	62
ErhI	CCWWGG	4 cut(s)	156, 363, 439, 454
FaeI	CATG	1 cut(s)	124
FaiI	YATR	3 cut(s)	122, 309, 494
FatI	CATG	1 cut(s)	120
FauI	CCCGC	2 cut(s)	23, 69
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	28, 46, 49
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	28, 46, 49
FspBI	CTAG	2 cut(s)	213, 336
GlaI	GCGC	2 cut(s)	65, 132
GluI	GCNGC	3 cut(s)	28, 46, 49
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	2 cut(s)	66, 133
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	2 cut(s)	64, 131
HinP1I	GCGC	2 cut(s)	64, 131
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	3 cut(s)	117, 193, 429
Hpy188III	TCNNGA	3 cut(s)	77, 97, 121
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	2 cut(s)	121, 370
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 42, 57, 137, 161
HpyF3I	CTNAG	3 cut(s)	396, 408, 426
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	2 cut(s)	64, 131
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	85, 99, 117, 502
LmnI	GCTCC	3 cut(s)	16, 33, 79
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	213, 336
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	224, 356
MalI	GATC	4 cut(s)	87, 101, 119, 504
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	4 cut(s)	85, 99, 117, 502
MboII	GAAGA	5 cut(s)	136, 256, 262, 314, 384
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	5 cut(s)	194, 255, 463, 472, 481
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	5 cut(s)	211, 240, 341, 346, 452
MseI	TTAA	2 cut(s)	258, 321
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	15, 24
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	5 cut(s)	33, 42, 57, 137, 161
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	4 cut(s)	85, 99, 117, 502
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	224, 356
PagI	TCATGA	1 cut(s)	120
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	386
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	29, 47, 50
Ple19I	CGATCG	1 cut(s)	102
PshBI	ATTAAT	1 cut(s)	258
Psp1406I	AACGTT	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	35
PvuI	CGATCG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	258, 321
SatI	GCNGC	3 cut(s)	28, 46, 49
Sau3AI	GATC	4 cut(s)	85, 99, 117, 502
ScrFI	CCNGG	2 cut(s)	15, 24
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	6 cut(s)	13, 75, 206, 327, 333, 445
SfaNI	GCATC	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	5 cut(s)	194, 255, 463, 472, 481
SsiI	CCGC	5 cut(s)	27, 30, 45, 48, 62
SspMI	CTAG	2 cut(s)	213, 336
StyD4I	CCNGG	2 cut(s)	13, 22
StyI	CCWWGG	4 cut(s)	156, 363, 439, 454
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	68, 312
TasI	AATT	5 cut(s)	194, 255, 463, 472, 481
TauI	GCSGC	3 cut(s)	30, 48, 51
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	258, 321
Tru9I	TTAA	2 cut(s)	258, 321
TseFI	GTSAC	2 cut(s)	224, 356
Tsp45I	GTSAC	2 cut(s)	224, 356
TspDTI	ATGAA	4 cut(s)	137, 187, 196, 378
Vha464I	CTTAAG	1 cut(s)	320
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	2 cut(s)	194, 472
XspI	CTAG	2 cut(s)	213, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.