RLG00000024032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001854
Physical Location & Seq
Reverse (-)
30984712 .. 30985492
781 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024032

Sequence Viewer

Length: 417 bp
ATGTCCGACAATGAGTGGGCCGTGCACTGGGTGATTTGTTGGAGGTACAACGTGGTGGTCTACGGTGGGTGGTGGGCGATGAATTCATCAACACCATCTAGAACTGCGGTGGTTGAGTGGGGTGGATTCAAGGCAGGCCATAACTTTGCAGGCCGGCGTGCTCGATGGTGCCTGTATTATGTAGGCTTCGACCTTATTTTCTTTGCTGCGTTCATGATTTATGTGTGCAGCAATGGTGGTGTGACTGATAAGGAAGCGATCTGGTGTCATTCTACCGGGTCTCAACGAACGGTGTTTGCAATGGTCAATGCTGGTGATGGGGTTGCTGTTTGGATAACAGATCCAGGTCTGTGTGCTATGGGGATGATGGCAACAGCCAACAAGGTTTGGCATCGGTGTATGCTCAGATTGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.62

Weight (kDa)

8.85

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 60
AciI CCGC 2 cut(s) 107, 412
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 82
AdeI CACNNNGTG 1 cut(s) 31
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 343
Alw21I GWGCWC 2 cut(s) 27, 163
Alw26I GTCTC 1 cut(s) 285
Alw44I GTGCAC 1 cut(s) 23
AlwI GGATC 1 cut(s) 335
AoxI GGCC 3 cut(s) 18, 136, 151
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 206, 228
ApoI RAATTY 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 43, 326
BaeGI GKGCMC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 27, 163
BbvI GCAGC 2 cut(s) 193, 240
BccI CCATC 4 cut(s) 103, 159, 311, 361
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 345
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 1 cut(s) 99
BisI GCNGC 2 cut(s) 207, 229
BlsI GCNGC 2 cut(s) 208, 230
Bme1390I CCNGG 2 cut(s) 277, 345
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 2 cut(s) 277, 345
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 400
BmuI ACTGGG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 2 cut(s) 238, 306
BseBI CCWGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMI GCAATG 2 cut(s) 238, 306
BseNI ACTGG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 2 cut(s) 193, 240
BsgI GTGCAG 1 cut(s) 247
BshFI GGCC 3 cut(s) 20, 138, 153
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 27, 163
BsiSI CCGG 2 cut(s) 154, 276
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 285
BsnI GGCC 3 cut(s) 20, 138, 153
Bso31I GGTCTC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 27, 163
Bsp143I GATC 2 cut(s) 258, 340
BspACI CCGC 2 cut(s) 107, 412
BspANI GGCC 3 cut(s) 20, 138, 153
BspCNI CTCAG 1 cut(s) 417
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 170
BspPI GGATC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 285
BsrDI GCAATG 2 cut(s) 238, 306
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 153
BssMI GATC 2 cut(s) 258, 340
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 65, 292
BstC8I GCNNGC 4 cut(s) 136, 151, 155, 159
BstDEI CTNAG 1 cut(s) 404
BstF5I GGATG 1 cut(s) 369
BstKTI GATC 2 cut(s) 261, 343
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 258, 340
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 275, 343
BstSLI GKGCMC 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 193, 240
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 3 cut(s) 20, 138, 153
BtgZI GCGATG 1 cut(s) 92
BtsCI GGATG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 4 cut(s) 136, 151, 155, 159
CciI TCATGA 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 214
CviJI RGCY 5 cut(s) 20, 138, 153, 186, 377
CviKI_1 RGCY 5 cut(s) 20, 138, 153, 186, 377
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 404
DpnI GATC 2 cut(s) 260, 342
DpnII GATC 2 cut(s) 258, 340
DraIII CACNNNGTG 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 1 cut(s) 217
FaiI YATR 6 cut(s) 141, 180, 215, 222, 359, 401
FatI CATG 1 cut(s) 213
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 207, 229
FokI GGATG 1 cut(s) 376
Fsp4HI GCNGC 2 cut(s) 207, 229
FspBI CTAG 1 cut(s) 99
GluI GCNGC 2 cut(s) 207, 229
HaeIII GGCC 3 cut(s) 20, 138, 153
HapII CCGG 2 cut(s) 154, 276
Hin1II CATG 1 cut(s) 217
HinfI GANTC 1 cut(s) 126
HpaII CCGG 2 cut(s) 154, 276
HphI GGTGA 2 cut(s) 43, 326
Hpy166II GTNNAC 2 cut(s) 25, 61
Hpy188I TCNGA 2 cut(s) 7, 407
Hpy188III TCNNGA 2 cut(s) 99, 214
Hpy8I GTNNAC 2 cut(s) 25, 61
HpyCH4III ACNGT 2 cut(s) 65, 292
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 25, 149, 228, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 1 cut(s) 217
KroI GCCGGC 1 cut(s) 153
KroNI GCCGGC 1 cut(s) 155
Kzo9I GATC 2 cut(s) 258, 340
Lsp1109I GCAGC 2 cut(s) 193, 240
LweI GCATC 1 cut(s) 400
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 260, 342
MboI GATC 2 cut(s) 258, 340
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 27, 163
MluCI AATT 1 cut(s) 82
MmeI TCCRAC 2 cut(s) 20, 30
MnlI CCTC 1 cut(s) 36
MroNI GCCGGC 1 cut(s) 153
MspI CCGG 2 cut(s) 154, 276
MspR9I CCNGG 2 cut(s) 277, 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 409
NaeI GCCGGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 277
NdeII GATC 2 cut(s) 258, 340
NgoMIV GCCGGC 1 cut(s) 153
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 241
PagI TCATGA 1 cut(s) 213
PdiI GCCGGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 126
PkrI GCNGC 2 cut(s) 208, 230
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 2 cut(s) 207, 229
Sau3AI GATC 2 cut(s) 258, 340
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 2 cut(s) 277, 345
SduI GDGCHC 2 cut(s) 27, 163
SetI ASST 5 cut(s) 47, 54, 195, 349, 387
SfaNI GCATC 1 cut(s) 400
Sse9I AATT 1 cut(s) 82
SsiI CCGC 2 cut(s) 107, 412
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 2 cut(s) 275, 343
TaaI ACNGT 2 cut(s) 65, 292
TaiI ACGT 1 cut(s) 54
TaqI TCGA 2 cut(s) 163, 189
TasI AATT 1 cut(s) 82
TfiI GAWTC 1 cut(s) 126
TscAI CASTG 1 cut(s) 32
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 206, 228
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 3 cut(s) 75, 95, 202
TspRI CASTG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 23
XapI RAATTY 1 cut(s) 82
XbaI TCTAGA 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.