Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001854

Physical Location & Seq

Genomic Coordinates Reverse (-)

19970949 .. 19980773

Gene Structure 9825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1124800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGAAGGCGCTTCCTCCTAACGGGAAAATCGCCAAGGATGCCAAGGAAATCGTCCAGGATTGCGTTTCTGAGTTCATCAGCTTCATCACCTCTGAGGCGAGTGACAAGTGCCAGAGAGAGAAGAGGAAGACGATTAACGGTGATGATTTGCTCTGGGCAATGGCGACTTTGGACTTTGAGGATTATATCGACCCCCTCAAAGTTTACCTCGCCAAATACAGAGAGGGTGATACCAAGGGTTCAGGGAAAGGTGGAGATTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCAAACCCTCAGATTTCTCACCAAGGTTCTTTCTCCCAAGGAGGGAACTACTCAAATTCTCAAAACCAGAACATGATAACTCCTCTGCAAGGATCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

131

Amino Acids

14.28

Weight (kDa)

5.86

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	1 - 55	8.3e-21	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37060 AT2G37060 AT2G37060 AT3G53340 AT3G53340 AT3G53340 AT3G53340 AT3G53340
fragaria_vesca	FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260
malus_domestica	MD04G1104700.v1.1 MD12G1124800.v1.1
prunus_persica	Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1
pyrus_communis	pycom04g09970 pycom12g12320
rosa_chinensis	RchiOBHm_Chr2g0145071 RchiOBHm_Chr3g0468661 RchiOBHm_Chr5g0066261
rosa_laevigata	RLG00000024032 RLG00000024417
rosa_multiflora	Rmu_co8446349.1_g000001 Rmu_sc0009516.1_g000001 Rmu_sc0011538.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010930 Rroxscaffold_6G00412670
rosa_rugosa	Rorug03G0096100 Rorug03G0096200 Rorug03G0096200 Rorug03G0096200
rosa_samantha	Rh1AG429500 Rh1BG152900 Rh2AG054200 Rh2DG539500 Rh3AG144900 Rh3BG167300 Rh3BG326700 Rh3DG166200
rosa_wichuraiana	Rw3G013660 Rw6G026160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	346
AfiI	CCNNNNNNNGG	3 cut(s)	23, 333, 380
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
AlwI	GGATC	1 cut(s)	391
ApoI	RAATTY	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	13
AsuHPI	GGTGA	4 cut(s)	82, 155, 242, 302
BbsI	GAAGAC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	137
BsaJI	CCNNGG	5 cut(s)	36, 45, 237, 313, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 333, 380
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	5 cut(s)	36, 45, 237, 313, 328
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	23, 333, 380
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	3 cut(s)	63, 87, 314
BseRI	GAGGAG	1 cut(s)	363
BslI	CCNNNNNNNGG	3 cut(s)	23, 333, 380
Bsp143I	GATC	1 cut(s)	383
BspCNI	CTCAG	3 cut(s)	64, 88, 313
BspPI	GGATC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	168
BssECI	CCNNGG	5 cut(s)	36, 45, 237, 313, 328
BssMI	GATC	1 cut(s)	383
BssT1I	CCWWGG	5 cut(s)	36, 45, 237, 313, 328
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	119
BstDEI	CTNAG	4 cut(s)	72, 96, 270, 300
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	1 cut(s)	386
BstMBI	GATC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	46
CfoI	GCGC	1 cut(s)	13
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	2 cut(s)	84, 286
CviKI_1	RGCY	2 cut(s)	84, 286
DdeI	CTNAG	4 cut(s)	72, 96, 270, 300
DpnI	GATC	1 cut(s)	385
DpnII	GATC	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	5 cut(s)	36, 45, 237, 313, 328
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	5 cut(s)	36, 45, 237, 313, 328
ErhI	CCWWGG	5 cut(s)	36, 45, 237, 313, 328
FaeI	CATG	1 cut(s)	367
FaiI	YATR	2 cut(s)	189, 365
FatI	CATG	1 cut(s)	363
FokI	GGATG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	14
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	1 cut(s)	260
HphI	GGTGA	4 cut(s)	82, 155, 242, 302
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	4 cut(s)	73, 97, 303, 388
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	4 cut(s)	72, 96, 270, 300
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	383
LpnPI	CCDG	6 cut(s)	44, 71, 128, 142, 231, 371
LweI	GCATC	1 cut(s)	31
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	385
MboI	GATC	1 cut(s)	383
MboII	GAAGA	4 cut(s)	16, 136, 142, 258
MluCI	AATT	1 cut(s)	346
MseI	TTAA	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	1 cut(s)	383
NlaIII	CATG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	5 cut(s)	86, 95, 213, 256, 319
SfaNI	GCATC	1 cut(s)	31
Sse9I	AATT	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	5 cut(s)	36, 45, 237, 313, 328
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	4 cut(s)	17, 67, 76, 252
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.