Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001854

Physical Location & Seq

Genomic Coordinates Reverse (-)

35162122 .. 35165345

Gene Structure 3224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGGAAGGTCCGGCGAGTCCAGGCGGCGGCGGGAGCCACGACAGCGGCGGCGAGCACAGTCCGCGGTCGAACGTTCGAGAACAGGATCGGTATCTTCCGATCGCGAATATTAGCAGGATCATGAAGAAGGCGCTTCCGGCGAACGGCAAGATCGCCAAGGATGCGAAGGAGACTGTGCAGGAATGCGTTTCCGAGTTCATCAGCTTCATCACCAGCGAGGCGAGCGATAAGTGCCAGAGGGAAAAGAGGAAGACGATTAATGGTGACGATTTGCTTTGGGCTATGGCGACTTTAGGGTTTGAAGACTATATCGATCCTCTCAAGATTTACCTTGCAAAATACAGAGAGATGGAGGGTGATACCAAGGGTTCAGGCAAGGGTGGAGAGTCATCTTCTAAGAAAGAAGTTCAGCCGAGCTCAATTGCTCAGATTTCTCATCAAGGTTCTTTCTCTCAAGGAGCTAGTTACTCAAATTCTCAAACCCAACAAATGATGGTTCCTATGCAAGGCTCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

173

Amino Acids

18.73

Weight (kDa)

5.97

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	19 - 96	2e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	32 - 96	7.1e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37060 AT2G37060 AT2G37060 AT3G53340 AT3G53340 AT3G53340 AT3G53340 AT3G53340
fragaria_vesca	FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260 FvH4_6g15260
malus_domestica	MD04G1104700.v1.1 MD12G1124800.v1.1
prunus_persica	Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1 Prupe.6G241800_v2.0.a1
pyrus_communis	pycom04g09970 pycom12g12320
rosa_chinensis	RchiOBHm_Chr2g0145071 RchiOBHm_Chr3g0468661 RchiOBHm_Chr5g0066261
rosa_laevigata	RLG00000024032 RLG00000024417
rosa_multiflora	Rmu_co8446349.1_g000001 Rmu_sc0009516.1_g000001 Rmu_sc0011538.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010930 Rroxscaffold_6G00412670
rosa_rugosa	Rorug03G0096100 Rorug03G0096200 Rorug03G0096200 Rorug03G0096200
rosa_samantha	Rh1AG429500 Rh1BG152900 Rh2AG054200 Rh2DG539500 Rh3AG144900 Rh3BG167300 Rh3BG326700 Rh3DG166200
rosa_wichuraiana	Rw3G013660 Rw6G026160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	67, 107
AciI	CCGC	8 cut(s)	5, 27, 30, 33, 48, 51, 65, 67
AclI	AACGTT	1 cut(s)	75
AclWI	GGATC	3 cut(s)	96, 128, 311
AcsI	RAATTY	1 cut(s)	475
AfiI	CCNNNNNNNGG	3 cut(s)	29, 146, 509
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	207, 420, 464
AluI	AGCT	3 cut(s)	207, 420, 464
Alw21I	GWGCWC	2 cut(s)	60, 422
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	3 cut(s)	96, 128, 311
ApoI	RAATTY	1 cut(s)	475
AseI	ATTAAT	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	205, 278, 371
AvaII	GGWCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	422
BbsI	GAAGAC	2 cut(s)	260, 312
Bbv12I	GWGCWC	2 cut(s)	60, 422
BccI	CCATC	2 cut(s)	346, 490
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	4 cut(s)	28, 31, 49, 52
BlsI	GCNGC	4 cut(s)	29, 32, 50, 53
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	38, 501
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	260, 312
BpuEI	CTTGAG	2 cut(s)	308, 441
Bsa29I	ATCGAT	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	65, 159, 366
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 146, 509
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	65, 159, 366
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	3 cut(s)	29, 146, 509
BseMII	CTCAG	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	67, 107
Bsh1285I	CGRYCG	2 cut(s)	71, 105
BshVI	ATCGAT	1 cut(s)	315
BsiEI	CGRYCG	2 cut(s)	71, 105
BsiHKAI	GWGCWC	2 cut(s)	60, 422
BsiSI	CCGG	2 cut(s)	14, 140
BslI	CCNNNNNNNGG	3 cut(s)	29, 146, 509
BsmAI	GTCTC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	60, 422
Bsp143I	GATC	5 cut(s)	88, 102, 120, 153, 316
Bsp68I	TCGCGA	1 cut(s)	107
BspACI	CCGC	8 cut(s)	5, 27, 30, 33, 48, 51, 65, 67
BspCNI	CTCAG	1 cut(s)	442
BspDI	ATCGAT	1 cut(s)	315
BspFNI	CGCG	2 cut(s)	67, 107
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	38, 501
BspPI	GGATC	3 cut(s)	96, 128, 311
BssECI	CCNNGG	3 cut(s)	65, 159, 366
BssMI	GATC	5 cut(s)	88, 102, 120, 153, 316
BssT1I	CCWWGG	2 cut(s)	159, 366
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	62, 178
BstC8I	GCNNGC	2 cut(s)	56, 226
BstDEI	CTNAG	3 cut(s)	399, 429, 514
BstDSI	CCRYGG	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	2 cut(s)	67, 107
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	5 cut(s)	91, 105, 123, 156, 319
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	5 cut(s)	88, 102, 120, 153, 316
BstMCI	CGRYCG	2 cut(s)	71, 105
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 45, 64, 140, 164, 225, 234
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstUI	CGCG	2 cut(s)	67, 107
BstV2I	GAAGAC	2 cut(s)	260, 312
Bsu15I	ATCGAT	1 cut(s)	315
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	169
BtuMI	TCGCGA	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	56, 226
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	11
Cfr42I	CCGCGG	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	315
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	7 cut(s)	39, 207, 284, 415, 420, 464, 513
CviKI_1	RGCY	7 cut(s)	39, 207, 284, 415, 420, 464, 513
DdeI	CTNAG	3 cut(s)	399, 429, 514
DpnI	GATC	5 cut(s)	90, 104, 122, 155, 318
DpnII	GATC	5 cut(s)	88, 102, 120, 153, 316
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	420
Eco130I	CCWWGG	2 cut(s)	159, 366
Eco24I	GRGCYC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	420
EcoNI	CCTNNNNNAGG	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	159, 366
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	2 cut(s)	159, 366
FaeI	CATG	1 cut(s)	127
FaiI	YATR	4 cut(s)	125, 287, 312, 506
FatI	CATG	1 cut(s)	123
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	4 cut(s)	28, 31, 49, 52
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	4 cut(s)	28, 31, 49, 52
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	4 cut(s)	28, 31, 49, 52
HaeII	RGCGCY	1 cut(s)	137
HapII	CCGG	2 cut(s)	14, 140
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	2 cut(s)	19, 389
HpaII	CCGG	2 cut(s)	14, 140
HphI	GGTGA	3 cut(s)	205, 278, 371
Hpy188I	TCNGA	4 cut(s)	102, 196, 432, 517
Hpy188III	TCNNGA	4 cut(s)	80, 106, 124, 325
HpyAV	CCTTC	2 cut(s)	124, 163
HpyCH4III	ACNGT	2 cut(s)	62, 178
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	181, 338, 508
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 45, 64, 140, 164, 225, 234
HpyF3I	CTNAG	3 cut(s)	399, 429, 514
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	1 cut(s)	134
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	5 cut(s)	88, 102, 120, 153, 316
LmnI	GCTCC	2 cut(s)	36, 461
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	266, 467
MalI	GATC	5 cut(s)	90, 104, 122, 155, 318
MboI	GATC	5 cut(s)	88, 102, 120, 153, 316
MboII	GAAGA	5 cut(s)	89, 139, 265, 317, 387
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	2 cut(s)	60, 422
MluCI	AATT	2 cut(s)	423, 475
MlyI	GAGTC	2 cut(s)	28, 398
MnlI	CCTC	5 cut(s)	214, 234, 243, 330, 349
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	2 cut(s)	48, 67
MspI	CCGG	2 cut(s)	14, 140
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	2 cut(s)	67, 107
MwoI	GCNNNNNNNGC	7 cut(s)	36, 45, 64, 140, 164, 225, 234
NdeII	GATC	5 cut(s)	88, 102, 120, 153, 316
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	2 cut(s)	38, 501
NmeAIII	GCCGAG	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	266
NruI	TCGCGA	1 cut(s)	107
PagI	TCATGA	1 cut(s)	123
PctI	GAATGC	1 cut(s)	191
PkrI	GCNGC	4 cut(s)	29, 32, 50, 53
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	2 cut(s)	27, 397
PpsI	GAGTC	2 cut(s)	27, 397
PshBI	ATTAAT	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	422
Psp1406I	AACGTT	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	38, 501
PspPI	GGNCC	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	105
RruI	TCGCGA	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	422
SacII	CCGCGG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	4 cut(s)	28, 31, 49, 52
Sau3AI	GATC	5 cut(s)	88, 102, 120, 153, 316
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	2 cut(s)	28, 398
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	60, 422
SetI	ASST	7 cut(s)	13, 78, 209, 336, 422, 448, 466
SfaNI	GCATC	1 cut(s)	154
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	323, 456
SmoI	CTYRAG	2 cut(s)	323, 456
Sse9I	AATT	2 cut(s)	423, 475
SsiI	CCGC	8 cut(s)	5, 27, 30, 33, 48, 51, 65, 67
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	2 cut(s)	159, 366
TaaI	ACNGT	2 cut(s)	62, 178
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	71, 79, 315
TasI	AATT	2 cut(s)	423, 475
TauI	GCSGC	4 cut(s)	30, 33, 51, 54
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	140, 190, 199
VpaK11BI	GGWCC	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	261
XagI	CCTNNNNNAGG	1 cut(s)	507
XapI	RAATTY	1 cut(s)	475
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.