Rh2AG054200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001854
Physical Location & Seq
Reverse (-)
4300255 .. 4301657
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG054200.1

Sequence Viewer

Length: 537 bp
ATGATTTATGTTTGCAGCAATGGTGGTGTGACTGATAAGGAGGCAATCTGGTGTCATTCTACCGGGTCTCAACAGATGGTGTTTGCAAAGGCCAACACTGGTGATGGGGTTGCTGTTTGGATAACAGTTCCAGGTCCGTGTGCTATGGGGATGATGGCAACAAGGTCTGGCATCGGTGTATGCTCAGATTGCTGTGAAGGGTCGTGCGCTGGTGGTGGAAGCGCGGGCATCGGTCTCTGGCGAGTGGTGCACGGTGGCGATGGCGGGGCTGTCTTCTCACTTGGTGTTTTCTCTAGGTGGATTGATTGGGCCTGGTATTGTAATCCTATCATATTTAGTGACGGAATTTGGAGGACAATGGTGAAGGTTTTCCAAAGTGTTGAAAGAGCAGTCGGCATCCTCCGGCGGGTGGTGTTTGGTGGCGGCGGCAGGGCTGTTTTCGTACTTAGGGTTTGTCCTAGGTGGTTGGGTTGGACCTGGAATTTGATTGTTAGGCCACCGATTTGGGCCCTGACAATTACCCTATTTTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.21

Weight (kDa)

8.84

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 224
AciI CCGC 5 cut(s) 224, 264, 406, 423, 426
AcsI RAATTY 2 cut(s) 345, 481
AdeI CACNNNGTG 1 cut(s) 284
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 406, 409
AgsI TTSAA 1 cut(s) 383
AjnI CCWGG 3 cut(s) 130, 311, 476
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 2 cut(s) 72, 239
Alw44I GTGCAC 1 cut(s) 248
AoxI GGCC 4 cut(s) 90, 309, 494, 507
ApaI GGGCCC 1 cut(s) 511
ApaLI GTGCAC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 2 cut(s) 345, 481
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
Asp700I GAANNNNTTC 1 cut(s) 368
AspA2I CCTAGG 1 cut(s) 458
AspLEI GCGC 2 cut(s) 209, 224
AspS9I GGNCC 5 cut(s) 134, 309, 474, 507, 508
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 113, 373
AvaII GGWCC 2 cut(s) 134, 474
AvrII CCTAGG 1 cut(s) 458
BaeGI GKGCMC 2 cut(s) 252, 511
BanII GRGCYC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 27
BccI CCATC 4 cut(s) 70, 98, 148, 254
BciT130I CCWGG 3 cut(s) 132, 313, 478
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 72, 239
BfaI CTAG 2 cut(s) 294, 459
BisI GCNGC 3 cut(s) 16, 424, 427
BlnI CCTAGG 1 cut(s) 458
BlsI GCNGC 3 cut(s) 17, 425, 428
Bme1390I CCNGG 4 cut(s) 64, 132, 313, 478
Bme18I GGWCC 2 cut(s) 134, 474
BmgT120I GGNCC 5 cut(s) 134, 309, 474, 507, 508
BmiI GGNNCC 1 cut(s) 509
BmrFI CCNGG 4 cut(s) 64, 132, 313, 478
BmsI GCATC 3 cut(s) 180, 237, 405
BpiI GAAGAC 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 64
BsaI GGTCTC 2 cut(s) 72, 239
BsaJI CCNNGG 1 cut(s) 458
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 409
Bse1I ACTGG 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 3 cut(s) 132, 313, 478
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 2 cut(s) 156, 396
BseLI CCNNNNNNNGG 2 cut(s) 406, 409
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 103
BseSI GKGCMC 2 cut(s) 252, 511
BseXI GCAGC 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 4 cut(s) 92, 311, 496, 509
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 2 cut(s) 63, 403
BslI CCNNNNNNNGG 2 cut(s) 406, 409
BsmAI GTCTC 2 cut(s) 72, 239
BsnI GGCC 4 cut(s) 92, 311, 496, 509
Bso31I GGTCTC 2 cut(s) 72, 239
Bsp120I GGGCCC 1 cut(s) 507
Bsp1286I GDGCHC 2 cut(s) 252, 511
BspACI CCGC 5 cut(s) 224, 264, 406, 423, 426
BspANI GGCC 4 cut(s) 92, 311, 496, 509
BspCNI CTCAG 1 cut(s) 197
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 509
BspTNI GGTCTC 2 cut(s) 72, 239
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 458
Bst2UI CCWGG 3 cut(s) 132, 313, 478
Bst4CI ACNGT 2 cut(s) 127, 254
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 184, 446
BstF5I GGATG 2 cut(s) 156, 396
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 2 cut(s) 209, 224
BstMAI GTCTC 2 cut(s) 72, 239
BstMWI GCNNNNNNNGC 2 cut(s) 189, 247
BstNI CCWGG 3 cut(s) 132, 313, 478
BstSCI CCNGG 4 cut(s) 62, 130, 311, 476
BstSLI GKGCMC 2 cut(s) 252, 511
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 504
BsuRI GGCC 4 cut(s) 92, 311, 496, 509
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 156, 396
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 226
CfoI GCGC 2 cut(s) 209, 224
Cfr13I GGNCC 5 cut(s) 134, 309, 474, 507, 508
Csp6I GTAC 1 cut(s) 443
CviJI RGCY 6 cut(s) 92, 269, 311, 434, 496, 509
CviKI_1 RGCY 6 cut(s) 92, 269, 311, 434, 496, 509
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 2 cut(s) 184, 446
DraIII CACNNNGTG 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 458
Eco24I GRGCYC 1 cut(s) 511
Eco31I GGTCTC 2 cut(s) 72, 239
Eco47I GGWCC 2 cut(s) 134, 474
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 3 cut(s) 130, 311, 476
EcoT14I CCWWGG 1 cut(s) 458
EcoT38I GRGCYC 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 458
FaiI YATR 4 cut(s) 9, 146, 181, 332
FauI CCCGC 3 cut(s) 217, 257, 399
Fnu4HI GCNGC 3 cut(s) 16, 424, 427
FokI GGATG 2 cut(s) 163, 383
FriOI GRGCYC 1 cut(s) 511
Fsp4HI GCNGC 3 cut(s) 16, 424, 427
FspBI CTAG 2 cut(s) 294, 459
GlaI GCGC 2 cut(s) 208, 223
GluI GCNGC 3 cut(s) 16, 424, 427
HaeIII GGCC 4 cut(s) 92, 311, 496, 509
HapII CCGG 2 cut(s) 63, 403
HhaI GCGC 2 cut(s) 209, 224
Hin6I GCGC 2 cut(s) 207, 222
HinP1I GCGC 2 cut(s) 207, 222
HpaII CCGG 2 cut(s) 63, 403
HphI GGTGA 2 cut(s) 113, 373
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 191, 358
HpyCH4III ACNGT 2 cut(s) 127, 254
HpyCH4V TGCA 3 cut(s) 15, 86, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 247
HpyF3I CTNAG 2 cut(s) 184, 446
HspAI GCGC 2 cut(s) 207, 222
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 3 cut(s) 180, 237, 405
MaeI CTAG 2 cut(s) 294, 459
MaeIII GTNAC 2 cut(s) 28, 338
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 252, 511
MluCI AATT 3 cut(s) 345, 481, 516
MmeI TCCRAC 1 cut(s) 452
MnlI CCTC 3 cut(s) 34, 345, 410
MroXI GAANNNNTTC 1 cut(s) 368
MspI CCGG 2 cut(s) 63, 403
MspR9I CCNGG 4 cut(s) 64, 132, 313, 478
MvaI CCWGG 3 cut(s) 132, 313, 478
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 189, 247
NciI CCSGG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 509
NmuCI GTSAC 2 cut(s) 28, 338
PdmI GAANNNNTTC 1 cut(s) 368
PkrI GCNGC 3 cut(s) 17, 425, 428
Psp6I CCWGG 3 cut(s) 130, 311, 476
PspGI CCWGG 3 cut(s) 130, 311, 476
PspN4I GGNNCC 1 cut(s) 509
PspOMI GGGCCC 1 cut(s) 507
PspPI GGNCC 5 cut(s) 134, 309, 474, 507, 508
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
SatI GCNGC 3 cut(s) 16, 424, 427
Sau96I GGNCC 5 cut(s) 134, 309, 474, 507, 508
ScrFI CCNGG 4 cut(s) 64, 132, 313, 478
SduI GDGCHC 2 cut(s) 252, 511
SetI ASST 6 cut(s) 136, 167, 299, 369, 464, 479
SfaNI GCATC 3 cut(s) 180, 237, 405
SinI GGWCC 2 cut(s) 134, 474
Sse9I AATT 3 cut(s) 345, 481, 516
SsiI CCGC 5 cut(s) 224, 264, 406, 423, 426
SspMI CTAG 2 cut(s) 294, 459
StyD4I CCNGG 4 cut(s) 62, 130, 311, 476
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 2 cut(s) 127, 254
TaqII GACCGA 1 cut(s) 221
TasI AATT 3 cut(s) 345, 481, 516
TauI GCSGC 2 cut(s) 426, 429
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 2 cut(s) 28, 338
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 2 cut(s) 28, 338
TspGWI ACGGA 2 cut(s) 126, 357
TspRI CASTG 1 cut(s) 103
VneI GTGCAC 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 134, 474
XapI RAATTY 2 cut(s) 345, 481
XmaJI CCTAGG 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 2 cut(s) 294, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.