Rh1BG152900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001854
Physical Location & Seq
Reverse (-)
25167500 .. 25171242
3743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG152900.1

Sequence Viewer

Length: 270 bp
ATGGGTTTTGCAAAGGCCACCGCTAGTGATTGGGTTGCTAATTGGATGACAGATCCAGATCAGAGTGCTCTGGGGATGCTGGAGGCAAGGTCTGGCATCGGTGTATGCTCAGATTGCGGCGCAGAACGTTGGCAGAATTGGGGTGATCTCGGACTTATGGGAATCTGCTCGCCGTCGGAGCTGTTTCGCCAAGAATCGGTATCAAGGTCGTCCCGAGTACTCGTTCATTCCAATACCCCAACTTCTAAAGTCTCCAAGGTGAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.65

Weight (kDa)

6.54

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 117
AclI AACGTT 1 cut(s) 127
AclWI GGATC 1 cut(s) 47
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 196
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
BmcAI AGTACT 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 213
BmsI GCATC 2 cut(s) 66, 105
BpmI CTGGAG 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 51, 81
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 123
BshFI GGCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 17
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 52, 58, 145
BspACI CCGC 2 cut(s) 21, 117
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 122
BspPI GGATC 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 3 cut(s) 52, 58, 145
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 51, 81
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 3 cut(s) 55, 61, 148
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 3 cut(s) 52, 58, 145
BstMWI GCNNNNNNNGC 2 cut(s) 114, 178
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 2 cut(s) 51, 81
Cac8I GCNNGC 1 cut(s) 170
CfoI GCGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 218
CviJI RGCY 2 cut(s) 17, 181
CviKI_1 RGCY 2 cut(s) 17, 181
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 109
DpnI GATC 3 cut(s) 54, 60, 147
DpnII GATC 3 cut(s) 52, 58, 145
Eco130I CCWWGG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaiI YATR 2 cut(s) 106, 158
FaqI GGGAC 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 2 cut(s) 58, 88
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 17
HhaI GCGC 1 cut(s) 122
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 2 cut(s) 162, 194
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 4 cut(s) 63, 112, 152, 178
Hpy188III TCNNGA 2 cut(s) 56, 213
Hpy99I CGWCG 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 178
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 1 cut(s) 127
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 3 cut(s) 52, 58, 145
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 4 cut(s) 56, 65, 69, 78
LweI GCATC 2 cut(s) 66, 105
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 127
MalI GATC 3 cut(s) 54, 60, 147
MboI GATC 3 cut(s) 52, 58, 145
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 2 cut(s) 40, 136
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 114, 178
NdeII GATC 3 cut(s) 52, 58, 145
PfeI GAWTC 2 cut(s) 162, 194
PkrI GCNGC 1 cut(s) 119
Psp1406I AACGTT 1 cut(s) 127
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 3 cut(s) 52, 58, 145
ScaI AGTACT 1 cut(s) 219
SduI GDGCHC 1 cut(s) 70
SetI ASST 5 cut(s) 92, 130, 183, 209, 261
SfaNI GCATC 2 cut(s) 66, 105
Sse9I AATT 2 cut(s) 40, 136
SsiI CCGC 2 cut(s) 21, 117
SspMI CTAG 1 cut(s) 24
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 1 cut(s) 130
TasI AATT 2 cut(s) 40, 136
TatI WGTACW 1 cut(s) 217
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 2 cut(s) 162, 194
TspDTI ATGAA 1 cut(s) 215
XspI CTAG 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.