Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0017189

Physical Location & Seq

Genomic Coordinates Forward (+)

13537322 .. 13539039

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGCTCCGCTCCGGCTTCCTCCCCCACGTCAAGGCCTGGAGCGCCGTCGTCAGCCGCCTCGCTGCCTCCGGCGACGACGGCCCTTCCGAAGCGCTCAAGCTCTTCTATTCCGTCACGCGCCGCGTCCGGAGGTTCGCCGAGCCGGAGCTGGTGGCGGACTCGCGGCCGGACACGGCGGCGTTCAATGCCGCGCTGAATGCTTGTGCTAATTTGGGTGATACAGATAGGTTCTTGAAGCTGTTCGACGAAATGCCTGAGTCAGGTGCCGAGCCGGATGTGCTTACTTATAATGACTTGCTTGTTTTTGTGTTGGAGAGGATTTTGGAGCAGGGGATCACAGTGTGTATGACCACATTGAATTCCCTGGTTGCGGCTTATGTTGGTTTCGGAGACTTGGAAACTGCGGAGAGGATGGTTCAGGCAATGAGGGAAGGGAGGAGAGACCTCTGCAAGATTCTAAGGGAGGCTAATTTGAGGAATTCGAATTCTAGTAGAAGAGATGGGGATGTGTTTGAGAGGTTGCTTCCGAATTCAGTTACAGCTAGTGAATGTGAGCCGCCATTGTTGCCGAAAGCGTATACTTCTAACTCGAGGATTTACACTACACTGATGAAGGGTTATATGAATGCTGGGCGTGTTACTGACACGGTTCGGATGCTAGAGGCACTGAGGCACCAGGATGATAGCTCGAGTCAGCCTGACCATGTGACATATACGACTGTTATTTCTGCATTTGTGAAGGCGGGTTCCATGGACCGTGCTCGCAGGGTTCTAGCTGAGATGACGAGAGTTGGCGTGCCTGCAAATCGGATAACGTATAACATTCTTCTCAAGGGTTATTGTCAGCAGCTGCAGATAGACCAGGCAAAGGAGCTGGTTAGAGAGATGACTGAGGATGCGGGGATTGAGCCTGATGTGGTTTCATATAACATCTTGATCGATGGGTGCATACAGGTTGATGACAGTGCTGGTGCTCTTGCTTTTTTCAATGAAATGAGAGCAAAAGGAATTGCTCCCACCAAGATCAGCTACACCACTTTGATGAAAGCTTTTGCCTTGTCTGGACAGCCAAAGCTGGCTAACAAGGTATTCGAAGAAATGCTCAACGATCCTCGGGTCAAGGCTGATTTGGTAGCTTGGAACATGTTGGTCGAAGGGTATTGCAGACTGGGGTTGGTTGAAGAATCCAAGAAAATCATTCAGAGAATGAAAGAGCATGGGTTTCACCCTGATGTGGCTACTTATGGTAGCCTAGCTAATGGGATAGCATTGGCCAGAAAACCGGGAGAGGCACTTTTGCTTTGGAATGAAGTGAAGGACAGATGTACAGCGAAAAAGGAAGGTGAAAAATCTGATGATTCAGATCCTCCAACATTGAAACCTGATGAAGGGCTTTTGGATACTTTGGCTGATATTTGTGTTAGGGCTGCTTTCTTCAAGAAGGCTCTAGAAATTGTCGCTTGTATGGAAGAGAATGGGATTCCTCCGAACAAGACCAAGTTCACTAAAATCTATGTGGAGATGCATTCGAGGATGTTTACTAGTAAGCACGCCTCACAAGCTAGGCAGGACAGGAGGAGTGAAAGGAAGAGAGCAGCTGAGGCTTTCAAGTTTTGGTTGGGTTTACCCAATTCTTATTATGGGAGTGAATGGAGGTTAGGATCTTTGGACGGAGATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

560

Amino Acids

62.48

Weight (kDa)

6.27

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	55 - 100	1.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	56 - 97	7.8e-09	PPR repeat family
TPR_24	PF23276	210 - 331	1.8e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	217 - 318	1.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	232 - 262	1.6e-07	PPR repeat
PPR_3	PF13812	232 - 280	2.9e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	233 - 282	5.5e-15	PPR repeat family
PPR	PF01535	236 - 266	5.2e-06	PPR repeat
PPR_1	PF12854	265 - 297	3.3e-08	PPR repeat
PPR_2	PF13041	269 - 317	2e-14	PPR repeat family
PPR_3	PF13812	292 - 351	3.5e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	304 - 352	3.1e-14	PPR repeat family
PPR_2	PF13041	376 - 422	1.5e-10	PPR repeat family
PPR	PF01535	378 - 408	3.1e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09650
fragaria_vesca	FvH4_6g15290
prunus_persica	Prupe.6G241600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468701
rosa_laevigata	RLG00000024415
rosa_multiflora	Rmu_sc0011538.1_g000002 Rmu_sc0028512.1_g000001 Rmu_sc0033138.1_g000003
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145300 Rh3BG168000 Rh3DG166600
rosa_wichuraiana	Rw3G013690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AccB1I	GGYRCC	2 cut(s)	263, 672
AccBSI	CCGCTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	578
AccII	CGCG	4 cut(s)	118, 123, 163, 191
AccIII	TCCGGA	1 cut(s)	126
AclWI	GGATC	4 cut(s)	341, 1103, 1358, 1669
AcoI	YGGCCR	2 cut(s)	164, 1272
AcsI	RAATTY	4 cut(s)	358, 478, 484, 529
AdeI	CACNNNGTG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	1327
AfeI	AGCGCT	1 cut(s)	93
AfiI	CCNNNNNNNGG	6 cut(s)	31, 260, 370, 868, 1234, 1388
AflIII	ACRYGT	1 cut(s)	1143
AgsI	TTSAA	8 cut(s)	184, 235, 358, 988, 1181, 1378, 1438, 1609
AhlI	ACTAGT	1 cut(s)	1541
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	4 cut(s)	35, 363, 675, 861
Alw21I	GWGCWC	2 cut(s)	763, 976
Alw26I	GTCTC	2 cut(s)	384, 435
AlwI	GGATC	4 cut(s)	341, 1103, 1358, 1669
AlwNI	CAGNNNCTG	1 cut(s)	850
Ama87I	CYCGRG	3 cut(s)	589, 688, 1113
Aor13HI	TCCGGA	1 cut(s)	126
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	4 cut(s)	33, 79, 164, 1272
ApeKI	GCWGC	5 cut(s)	62, 847, 850, 1427, 1595
ApoI	RAATTY	4 cut(s)	358, 478, 484, 529
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	4 cut(s)	44, 94, 120, 193
AspS9I	GGNCC	2 cut(s)	80, 754
AsuC2I	CCSGG	1 cut(s)	1284
AsuHPI	GGTGA	3 cut(s)	227, 1217, 1355
AsuII	TTCGAA	2 cut(s)	482, 1092
AvaI	CYCGRG	3 cut(s)	589, 688, 1113
AvaII	GGWCC	1 cut(s)	754
BalI	TGGCCA	1 cut(s)	1274
BanI	GGYRCC	2 cut(s)	263, 672
Bbv12I	GWGCWC	2 cut(s)	763, 976
BbvCI	CCTCAGC	1 cut(s)	1599
BbvI	GCAGC	5 cut(s)	49, 837, 859, 1414, 1607
BccI	CCATC	3 cut(s)	406, 494, 935
BceAI	ACGGC	3 cut(s)	29, 94, 189
BciT130I	CCWGG	4 cut(s)	37, 365, 677, 863
BciVI	GTATCC	1 cut(s)	1393
BcnI	CCSGG	1 cut(s)	1284
BcoDI	GTCTC	2 cut(s)	384, 435
BcuI	ACTAGT	1 cut(s)	1541
BfaI	CTAG	8 cut(s)	489, 543, 659, 773, 1253, 1448, 1542, 1563
BfmI	CTRYAG	1 cut(s)	851
BfoI	RGCGCY	2 cut(s)	45, 95
BfuI	GTATCC	1 cut(s)	1393
Bme1390I	CCNGG	5 cut(s)	37, 365, 677, 863, 1284
Bme18I	GGWCC	1 cut(s)	754
BmeT110I	CYCGRG	3 cut(s)	589, 688, 1113
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	80, 754
BmiI	GGNNCC	3 cut(s)	265, 674, 748
BmrFI	CCNGG	5 cut(s)	37, 365, 677, 863, 1284
BmrI	ACTGGG	1 cut(s)	1178
BmsI	GCATC	3 cut(s)	645, 886, 1512
BmuI	ACTGGG	1 cut(s)	1178
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	1599
Bpu14I	TTCGAA	2 cut(s)	482, 1092
BpuEI	CTTGAG	2 cut(s)	80, 815
BpuMI	CCSGG	1 cut(s)	1284
Bsa29I	ATCGAT	1 cut(s)	939
BsaBI	GATNNNNATC	1 cut(s)	1362
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	363, 750, 1112
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 260, 370, 868, 1234, 1388
Bse1I	ACTGG	1 cut(s)	1173
Bse3DI	GCAATG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	1362
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	4 cut(s)	37, 365, 677, 863
BseCI	ATCGAT	1 cut(s)	939
BseDI	CCNNGG	3 cut(s)	363, 750, 1112
BseGI	GGATG	7 cut(s)	280, 417, 511, 660, 685, 901, 1539
BseJI	GATNNNNATC	1 cut(s)	1362
BseLI	CCNNNNNNNGG	6 cut(s)	31, 260, 370, 868, 1234, 1388
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	5 cut(s)	246, 659, 768, 882, 1590
BseNI	ACTGG	1 cut(s)	1173
BseRI	GAGGAG	2 cut(s)	451, 1591
BseX3I	CGGCCG	1 cut(s)	164
BseXI	GCAGC	5 cut(s)	49, 837, 859, 1414, 1607
BseYI	CCCAGC	1 cut(s)	629
Bsh1236I	CGCG	4 cut(s)	118, 123, 163, 191
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	4 cut(s)	35, 81, 166, 1274
BshNI	GGYRCC	2 cut(s)	263, 672
BshVI	ATCGAT	1 cut(s)	939
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	763, 976
BsiHKCI	CYCGRG	3 cut(s)	589, 688, 1113
BsiSI	CCGG	7 cut(s)	12, 69, 127, 143, 167, 272, 1283
BslI	CCNNNNNNNGG	6 cut(s)	31, 260, 370, 868, 1234, 1388
BsmAI	GTCTC	2 cut(s)	384, 435
BsmI	GAATGC	3 cut(s)	202, 631, 1525
BsnI	GGCC	4 cut(s)	35, 81, 166, 1274
Bso31I	GGTCTC	1 cut(s)	435
BsoBI	CYCGRG	3 cut(s)	589, 688, 1113
Bsp119I	TTCGAA	2 cut(s)	482, 1092
Bsp1286I	GDGCHC	2 cut(s)	763, 976
Bsp13I	TCCGGA	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	1325
Bsp143I	GATC	6 cut(s)	333, 936, 1023, 1108, 1363, 1661
Bsp19I	CCATGG	1 cut(s)	750
BspANI	GGCC	4 cut(s)	35, 81, 166, 1274
BspCNI	CTCAG	5 cut(s)	247, 660, 769, 883, 1591
BspDI	ATCGAT	1 cut(s)	939
BspEI	TCCGGA	1 cut(s)	126
BspFNI	CGCG	4 cut(s)	118, 123, 163, 191
BspLI	GGNNCC	3 cut(s)	265, 674, 748
BspMAI	CTGCAG	1 cut(s)	855
BspPI	GGATC	4 cut(s)	341, 1103, 1358, 1669
BspQI	GCTCTTC	1 cut(s)	107
BspT104I	TTCGAA	2 cut(s)	482, 1092
BspT107I	GGYRCC	2 cut(s)	263, 672
BspTNI	GGTCTC	1 cut(s)	435
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	1325
BsrI	ACTGG	1 cut(s)	1173
BssECI	CCNNGG	3 cut(s)	363, 750, 1112
BssMI	GATC	6 cut(s)	333, 936, 1023, 1108, 1363, 1661
BssNAI	GTATAC	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	750
Bst1107I	GTATAC	1 cut(s)	579
Bst2UI	CCWGG	4 cut(s)	37, 365, 677, 863
Bst4CI	ACNGT	5 cut(s)	340, 649, 721, 758, 965
Bst6I	CTCTTC	4 cut(s)	107, 490, 1464, 1583
BstAUI	TGTACA	1 cut(s)	1325
BstBI	TTCGAA	2 cut(s)	482, 1092
BstC8I	GCNNGC	5 cut(s)	763, 797, 801, 1077, 1551
BstDEI	CTNAG	6 cut(s)	255, 458, 668, 777, 891, 1599
BstDSI	CCRYGG	1 cut(s)	750
BstENI	CCTNNNNNAGG	2 cut(s)	258, 1386
BstF5I	GGATG	7 cut(s)	280, 417, 511, 660, 685, 901, 1539
BstFNI	CGCG	4 cut(s)	118, 123, 163, 191
BstH2I	RGCGCY	2 cut(s)	45, 95
BstHHI	GCGC	4 cut(s)	44, 94, 120, 193
BstKTI	GATC	6 cut(s)	336, 939, 1026, 1111, 1366, 1664
BstMAI	GTCTC	2 cut(s)	384, 435
BstMBI	GATC	6 cut(s)	333, 936, 1023, 1108, 1363, 1661
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 78, 185, 197, 277, 565, 1559, 1601
BstNI	CCWGG	4 cut(s)	37, 365, 677, 863
BstNSI	RCATGY	1 cut(s)	1147
BstSCI	CCNGG	5 cut(s)	35, 363, 675, 861, 1282
BstSFI	CTRYAG	1 cut(s)	851
BstUI	CGCG	4 cut(s)	118, 123, 163, 191
BstV1I	GCAGC	5 cut(s)	49, 837, 859, 1414, 1607
BstX2I	RGATCY	2 cut(s)	1363, 1661
BstYI	RGATCY	2 cut(s)	1363, 1661
BstZ17I	GTATAC	1 cut(s)	579
BstZI	CGGCCG	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	939
BsuI	GTATCC	1 cut(s)	1393
BsuRI	GGCC	4 cut(s)	35, 81, 166, 1274
BsuTUI	ATCGAT	1 cut(s)	939
BtgI	CCRYGG	1 cut(s)	750
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	7 cut(s)	280, 417, 511, 660, 685, 901, 1539
BtsIMutI	CAGTG	4 cut(s)	345, 605, 665, 970
Cac8I	GCNNGC	5 cut(s)	763, 797, 801, 1077, 1551
CaiI	CAGNNNCTG	1 cut(s)	850
CfoI	GCGC	4 cut(s)	44, 94, 120, 193
Cfr13I	GGNCC	2 cut(s)	80, 754
ClaI	ATCGAT	1 cut(s)	939
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	1326
CviAII	CATG	4 cut(s)	704, 751, 1144, 1217
CviQI	GTAC	1 cut(s)	1326
DdeI	CTNAG	6 cut(s)	255, 458, 668, 777, 891, 1599
DpnI	GATC	6 cut(s)	335, 938, 1025, 1110, 1365, 1663
DpnII	GATC	6 cut(s)	333, 936, 1023, 1108, 1363, 1661
DraIII	CACNNNGTG	1 cut(s)	342
EaeI	YGGCCR	2 cut(s)	164, 1272
EagI	CGGCCG	1 cut(s)	164
Eam1104I	CTCTTC	4 cut(s)	107, 490, 1464, 1583
EarI	CTCTTC	4 cut(s)	107, 490, 1464, 1583
EciI	GGCGGA	1 cut(s)	170
EclXI	CGGCCG	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	754
Eco47III	AGCGCT	1 cut(s)	93
Eco52I	CGGCCG	1 cut(s)	164
Eco88I	CYCGRG	3 cut(s)	589, 688, 1113
EcoNI	CCTNNNNNAGG	2 cut(s)	258, 1386
EcoRI	GAATTC	4 cut(s)	358, 478, 484, 529
EcoRII	CCWGG	4 cut(s)	35, 363, 675, 861
EcoT14I	CCWWGG	1 cut(s)	750
EcoT22I	ATGCAT	1 cut(s)	1527
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	4 cut(s)	707, 754, 1147, 1220
FatI	CATG	4 cut(s)	703, 750, 1143, 1216
FauI	CCCGC	2 cut(s)	736, 892
FblI	GTMKAC	1 cut(s)	578
FokI	GGATG	7 cut(s)	287, 424, 518, 667, 692, 908, 1546
FspBI	CTAG	8 cut(s)	489, 543, 659, 773, 1253, 1448, 1542, 1563
GlaI	GCGC	4 cut(s)	43, 93, 119, 192
GsaI	CCCAGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	2 cut(s)	45, 95
HaeIII	GGCC	4 cut(s)	35, 81, 166, 1274
HapII	CCGG	7 cut(s)	12, 69, 127, 143, 167, 272, 1283
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	4 cut(s)	44, 94, 120, 193
Hin1II	CATG	4 cut(s)	707, 754, 1147, 1220
Hin6I	GCGC	4 cut(s)	42, 92, 118, 191
HinP1I	GCGC	4 cut(s)	42, 92, 118, 191
HindIII	AAGCTT	1 cut(s)	1047
HinfI	GANTC	7 cut(s)	158, 257, 454, 691, 1184, 1358, 1480
HpaII	CCGG	7 cut(s)	12, 69, 127, 143, 167, 272, 1283
HphI	GGTGA	3 cut(s)	227, 1217, 1355
Hpy166II	GTNNAC	4 cut(s)	579, 1503, 1539, 1625
Hpy188I	TCNGA	9 cut(s)	88, 389, 528, 654, 810, 1203, 1354, 1363, 1488
Hpy188III	TCNNGA	6 cut(s)	127, 232, 934, 1062, 1438, 1448
Hpy8I	GTNNAC	4 cut(s)	579, 1503, 1539, 1625
Hpy99I	CGWCG	4 cut(s)	50, 77, 80, 248
HpyAV	CCTTC	9 cut(s)	93, 425, 607, 733, 1148, 1309, 1334, 1382, 1435
HpyCH4III	ACNGT	5 cut(s)	340, 649, 721, 758, 965
HpyCH4IV	ACGT	2 cut(s)	27, 815
HpyCH4V	TGCA	7 cut(s)	450, 731, 803, 853, 948, 1164, 1525
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 78, 185, 197, 277, 565, 1559, 1601
HpyF3I	CTNAG	6 cut(s)	255, 458, 668, 777, 891, 1599
HpySE526I	ACGT	2 cut(s)	27, 815
Hsp92II	CATG	4 cut(s)	707, 754, 1147, 1220
HspAI	GCGC	4 cut(s)	42, 92, 118, 191
Kpn2I	TCCGGA	1 cut(s)	126
Kzo9I	GATC	6 cut(s)	333, 936, 1023, 1108, 1363, 1661
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	7 cut(s)	9, 14, 39, 145, 325, 871, 1018
Lsp1109I	GCAGC	5 cut(s)	49, 837, 859, 1414, 1607
LweI	GCATC	3 cut(s)	645, 886, 1512
MaeI	CTAG	8 cut(s)	489, 543, 659, 773, 1253, 1448, 1542, 1563
MaeII	ACGT	2 cut(s)	27, 815
MaeIII	GTNAC	4 cut(s)	112, 535, 637, 706
MalI	GATC	6 cut(s)	335, 938, 1025, 1110, 1365, 1663
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	6 cut(s)	333, 936, 1023, 1108, 1363, 1661
MboII	GAAGA	8 cut(s)	94, 507, 818, 1106, 1193, 1426, 1481, 1600
MflI	RGATCY	2 cut(s)	1363, 1661
MhlI	GDGCHC	2 cut(s)	763, 976
MlsI	TGGCCA	1 cut(s)	1274
MluCI	AATT	9 cut(s)	208, 358, 469, 478, 484, 529, 1008, 1452, 1630
MluNI	TGGCCA	1 cut(s)	1274
MlyI	GAGTC	3 cut(s)	152, 266, 700
MmeI	TCCRAC	2 cut(s)	291, 1394
Mox20I	TGGCCA	1 cut(s)	1274
Mph1103I	ATGCAT	1 cut(s)	1527
MroI	TCCGGA	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	1274
MslI	CAYNNNNRTG	3 cut(s)	678, 1040, 1230
Msp20I	TGGCCA	1 cut(s)	1274
MspA1I	CMGCKG	2 cut(s)	850, 1598
MspI	CCGG	7 cut(s)	12, 69, 127, 143, 167, 272, 1283
MspR9I	CCNGG	5 cut(s)	37, 365, 677, 863, 1284
Mva1269I	GAATGC	3 cut(s)	202, 631, 1525
MvaI	CCWGG	4 cut(s)	37, 365, 677, 863
MvnI	CGCG	4 cut(s)	118, 123, 163, 191
MwoI	GCNNNNNNNGC	8 cut(s)	41, 78, 185, 197, 277, 565, 1559, 1601
NciI	CCSGG	1 cut(s)	1284
NcoI	CCATGG	1 cut(s)	750
NdeII	GATC	6 cut(s)	333, 936, 1023, 1108, 1363, 1661
NlaIII	CATG	4 cut(s)	707, 754, 1147, 1220
NlaIV	GGNNCC	3 cut(s)	265, 674, 748
NmeAIII	GCCGAG	2 cut(s)	163, 292
NmuCI	GTSAC	2 cut(s)	112, 706
NsiI	ATGCAT	1 cut(s)	1527
NspI	RCATGY	1 cut(s)	1147
NspV	TTCGAA	2 cut(s)	482, 1092
PaeR7I	CTCGAG	2 cut(s)	589, 688
PceI	AGGCCT	1 cut(s)	35
PciI	ACATGT	1 cut(s)	1143
PciSI	GCTCTTC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	3 cut(s)	202, 631, 1525
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	4 cut(s)	454, 1184, 1358, 1480
PleI	GAGTC	3 cut(s)	152, 265, 699
PpsI	GAGTC	3 cut(s)	152, 265, 699
PscI	ACATGT	1 cut(s)	1143
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	4 cut(s)	35, 363, 675, 861
PspFI	CCCAGC	1 cut(s)	629
PspGI	CCWGG	4 cut(s)	35, 363, 675, 861
PspN4I	GGNNCC	3 cut(s)	265, 674, 748
PspPI	GGNCC	2 cut(s)	80, 754
PspXI	VCTCGAGB	2 cut(s)	589, 688
PstI	CTGCAG	1 cut(s)	855
PstNI	CAGNNNCTG	1 cut(s)	850
PsuI	RGATCY	2 cut(s)	1363, 1661
PvuII	CAGCTG	2 cut(s)	850, 1598
RsaI	GTAC	1 cut(s)	1327
RsaNI	GTAC	1 cut(s)	1326
RseI	CAYNNNNRTG	3 cut(s)	678, 1040, 1230
SapI	GCTCTTC	1 cut(s)	107
Sau3AI	GATC	6 cut(s)	333, 936, 1023, 1108, 1363, 1661
Sau96I	GGNCC	2 cut(s)	80, 754
SchI	GAGTC	3 cut(s)	152, 266, 700
ScrFI	CCNGG	5 cut(s)	37, 365, 677, 863, 1284
SduI	GDGCHC	2 cut(s)	763, 976
SfaNI	GCATC	3 cut(s)	645, 886, 1512
SfcI	CTRYAG	1 cut(s)	851
Sfr274I	CTCGAG	2 cut(s)	589, 688
SfuI	TTCGAA	2 cut(s)	482, 1092
SinI	GGWCC	1 cut(s)	754
SlaI	CTCGAG	2 cut(s)	589, 688
SmiMI	CAYNNNNRTG	3 cut(s)	678, 1040, 1230
SmlI	CTYRAG	4 cut(s)	95, 589, 688, 830
SmoI	CTYRAG	4 cut(s)	95, 589, 688, 830
SpeI	ACTAGT	1 cut(s)	1541
Sse9I	AATT	9 cut(s)	208, 358, 469, 478, 484, 529, 1008, 1452, 1630
SseBI	AGGCCT	1 cut(s)	35
SspMI	CTAG	8 cut(s)	489, 543, 659, 773, 1253, 1448, 1542, 1563
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	5 cut(s)	35, 363, 675, 861, 1282
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	5 cut(s)	340, 649, 721, 758, 965
TaiI	ACGT	2 cut(s)	30, 818
TaqI	TCGA	8 cut(s)	243, 482, 590, 689, 939, 1092, 1152, 1529
TasI	AATT	9 cut(s)	208, 358, 469, 478, 484, 529, 1008, 1452, 1630
TatI	WGTACW	1 cut(s)	1325
TauI	GCSGC	7 cut(s)	57, 123, 166, 179, 191, 374, 559
TfiI	GAWTC	4 cut(s)	454, 1184, 1358, 1480
TscAI	CASTG	4 cut(s)	345, 612, 672, 970
TseFI	GTSAC	2 cut(s)	112, 706
TseI	GCWGC	5 cut(s)	62, 847, 850, 1427, 1595
Tsp45I	GTSAC	2 cut(s)	112, 706
TspDTI	ATGAA	8 cut(s)	626, 638, 912, 1005, 1058, 1223, 1323, 1401
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	4 cut(s)	345, 612, 672, 970
VpaK11BI	GGWCC	1 cut(s)	754
XagI	CCTNNNNNAGG	2 cut(s)	258, 1386
XapI	RAATTY	4 cut(s)	358, 478, 484, 529
XbaI	TCTAGA	1 cut(s)	1447
XceI	RCATGY	1 cut(s)	1147
XhoI	CTCGAG	2 cut(s)	589, 688
XmiI	GTMKAC	1 cut(s)	578
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	8 cut(s)	489, 543, 659, 773, 1253, 1448, 1542, 1563
Zsp2I	ATGCAT	1 cut(s)	1527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.