Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011828

Physical Location & Seq

Genomic Coordinates Reverse (-)

2996179 .. 2998255

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGGAAACATTAGCAGCAGCGGTGGTGAAGGTAGACGCCGTCGACGGCGAAACCATACGGCGGCTCCACCACCACCTCCTCCTCCTCCTTCTTCTTCTCTTCCTCCACCACCTCTACCTACAGAAATCCAAGCTAATCCCATCGTTTTCGCTGCCGTTACTCCCTATCCTAATCCTAATCCTAATCCGGTTTACCAGTACCCTGCTTCTTACTACCACCATCCTCCCCCGGGAGCCATGCCTCTTCCGCCGTACGACCACCACCTCCAACATCATCCACCGCATCCTTACCACAACCACTCTTGGGCTCCCGTGGCGATGGCCAGATACCCTTATGCTGGTCACATGATGGCTCAACCGACTCCTTACGTTGAACACCAGAAAGCCGTCACGATTCGTAACGACGTTAATCTCAAGAAGGAGTCTCTTAGGCTTGAACCCGACCCGGATAATCCGGGTCGCTTTCTCGTCTCCTTTACGTTTGATGCAACCGTCTCCGGAAGGATTAGTGTCATTTTCTTTGCTAAAGAATCCGAAGATTGCAAACTCACAGCGACAAAGGAAGATATACTGCCACCTATCACTCTAGATTTCGAGAAAGGACTTGGTCAGAAGTTTAAACAATCATCTGGTTCTGGTATAGACTTTTCGGTCTTTGAGGACGTTGAGCTGTTCAAAGCGGCCGCAGACACAGAGATCTATCCATTAGCGGTTAAGGCAGAAGCAGCTCCCTCAGGTGGTGAGAATGAAGAAGAAGAAAGGTCGGGGTCGAAGAATGCGCAGATTACTCAAGCGGTTTATGAGAAGGATAAAGGAGAGATTAAGATTAGAGTGGTGAAGCAGATACTATGGGTTAATGGAACGAGATATGAGTTGCAGGAGATTTATGGGATTGGGAATACAGTTGAGGGGGATGATGATTCAGCTGATGATGCTAATGATCCTGGTAAAGAATGTGTTATATGTTTGTCTGAACCACGAGACACCACTGTTCTTCCATGTCGACATATGTGTATGTGTAGCGGATGTGCTAAGGTATTGAGGTTTCAGACAAATCGATGCCCCATTTGCAGGCAACCTGTTGAAAGGCTTTTGGAGATAAAAGTTCACGGTAACAACGGAAGCGGGAATAACACCGGACAGGGAGAAACAGTTGAACAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005829 GO:0005886 GO:0006464 GO:0006513 GO:0006807 GO:0006810 GO:0007034 GO:0007041 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008277 GO:0008333 GO:0008589 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016192 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0032446 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043949 GO:0043951 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045744 GO:0045879 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055081 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080144 GO:0097305 GO:0097306 GO:0097708 GO:0140096 GO:1901527 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

388

Amino Acids

42.85

Weight (kDa)

5.81

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNF157-like_N	PF26192	136 - 292	7.7e-62	RNF157-like N-terminal domain
zf-C3HC4_3	PF13920	317 - 338	9.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09770 AT3G09770
fragaria_vesca	FvH4_6g15750
malus_domestica	MD04G1099100.v1.1 MD12G1119700.v1.1
prunus_persica	Prupe.6G237500_v2.0.a1 Prupe.6G237500_v2.0.a1
pyrus_communis	pycom04g09400
rosa_chinensis	RchiOBHm_Chr3g0469461
rosa_laevigata	RLG00000024348
rosa_multiflora	Rmu_sc0005274.1_g000003 Rmu_sc0008852.1_g000003
rosa_roxburghii	Rroxscaffold_6G00411870
rosa_rugosa	Rorug03G0101900
rosa_samantha	Rh3AG150900 Rh3BG174600 Rh3CG165600 Rh3DG200800
rosa_wichuraiana	Rw3G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	650
Acc16I	TGCGCA	1 cut(s)	780
AccI	GTMKAC	3 cut(s)	34, 43, 1003
AccIII	TCCGGA	1 cut(s)	497
AclWI	GGATC	1 cut(s)	935
AcoI	YGGCCR	2 cut(s)	321, 681
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	2 cut(s)	200, 254
AfiI	CCNNNNNNNGG	6 cut(s)	61, 230, 304, 338, 737, 1071
AgsI	TTSAA	5 cut(s)	374, 437, 676, 1085, 1157
AjnI	CCWGG	1 cut(s)	943
AluBI	AGCT	4 cut(s)	134, 670, 728, 926
AluI	AGCT	4 cut(s)	134, 670, 728, 926
Alw26I	GTCTC	4 cut(s)	429, 475, 499, 975
AlwI	GGATC	1 cut(s)	935
Ama87I	CYCGRG	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	497
AoxI	GGCC	2 cut(s)	321, 681
ApeKI	GCWGC	4 cut(s)	15, 18, 152, 725
AspLEI	GCGC	1 cut(s)	781
AsuC2I	CCSGG	4 cut(s)	230, 231, 446, 456
AsuHPI	GGTGA	3 cut(s)	38, 752, 847
AvaI	CYCGRG	1 cut(s)	229
AxyI	CCTNAGG	1 cut(s)	733
BalI	TGGCCA	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	978
BbvI	GCAGC	4 cut(s)	27, 30, 139, 737
BccI	CCATC	4 cut(s)	149, 228, 313, 343
BceAI	ACGGC	6 cut(s)	24, 62, 75, 140, 235, 371
BciT130I	CCWGG	1 cut(s)	945
BcnI	CCSGG	4 cut(s)	230, 231, 446, 456
BcoDI	GTCTC	4 cut(s)	429, 475, 499, 975
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	1 cut(s)	120
BglII	AGATCT	1 cut(s)	696
BisI	GCNGC	7 cut(s)	16, 19, 63, 153, 681, 684, 726
BlsI	GCNGC	7 cut(s)	17, 20, 64, 154, 682, 685, 727
Bme1390I	CCNGG	5 cut(s)	230, 231, 446, 456, 945
BmeT110I	CYCGRG	1 cut(s)	229
BmiI	GGNNCC	3 cut(s)	66, 235, 309
BmrFI	CCNGG	5 cut(s)	230, 231, 446, 456, 945
BmsI	GCATC	4 cut(s)	292, 475, 922, 1049
Bpu10I	CCTNAGC	1 cut(s)	1032
BpuEI	CTTGAG	2 cut(s)	398, 774
BpuMI	CCSGG	4 cut(s)	230, 231, 446, 456
Bsa29I	ATCGAT	1 cut(s)	1057
BsaHI	GRCGYC	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	228, 229, 312
BsaWI	WCCGGW	3 cut(s)	187, 497, 1136
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 1137, 1167
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 230, 304, 338, 737, 1071
Bse1I	ACTGG	1 cut(s)	196
Bse21I	CCTNAGG	1 cut(s)	733
BseAI	TCCGGA	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	945
BseCI	ATCGAT	1 cut(s)	1057
BseDI	CCNNGG	3 cut(s)	228, 229, 312
BseGI	GGATG	5 cut(s)	220, 274, 283, 919, 1031
BseLI	CCNNNNNNNGG	6 cut(s)	61, 230, 304, 338, 737, 1071
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	3 cut(s)	69, 72, 75
BseX3I	CGGCCG	1 cut(s)	681
BseXI	GCAGC	4 cut(s)	27, 30, 139, 737
Bsh1285I	CGRYCG	1 cut(s)	684
BshFI	GGCC	2 cut(s)	323, 683
BshVI	ATCGAT	1 cut(s)	1057
BsiEI	CGRYCG	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	6 cut(s)	188, 230, 446, 455, 498, 1137
BsiWI	CGTACG	1 cut(s)	252
BslI	CCNNNNNNNGG	6 cut(s)	61, 230, 304, 338, 737, 1071
BsmAI	GTCTC	4 cut(s)	429, 475, 499, 975
BsmBI	CGTCTC	2 cut(s)	475, 499
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	2 cut(s)	323, 683
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp13I	TCCGGA	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	696, 940
BspANI	GGCC	2 cut(s)	323, 683
BspCNI	CTCAG	1 cut(s)	746
BspDI	ATCGAT	1 cut(s)	1057
BspEI	TCCGGA	1 cut(s)	497
BspLI	GGNNCC	3 cut(s)	66, 235, 309
BspPI	GGATC	1 cut(s)	935
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	3 cut(s)	228, 229, 312
BssMI	GATC	2 cut(s)	696, 940
BssNI	GRCGYC	1 cut(s)	37
BssSI	CACGAG	1 cut(s)	978
Bst2BI	CACGAG	1 cut(s)	978
Bst2UI	CCWGG	1 cut(s)	945
Bst4CI	ACNGT	5 cut(s)	493, 904, 991, 1112, 1153
Bst6I	CTCTTC	2 cut(s)	105, 249
BstACI	GRCGYC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	1073
BstDEI	CTNAG	3 cut(s)	428, 733, 1032
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	5 cut(s)	220, 274, 283, 919, 1031
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	2 cut(s)	699, 943
BstMAI	GTCTC	4 cut(s)	429, 475, 499, 975
BstMBI	GATC	2 cut(s)	696, 940
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	6 cut(s)	247, 314, 716, 725, 932, 1068
BstNI	CCWGG	1 cut(s)	945
BstSCI	CCNGG	5 cut(s)	228, 229, 444, 454, 943
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	4 cut(s)	27, 30, 139, 737
BstX2I	RGATCY	1 cut(s)	696
BstYI	RGATCY	1 cut(s)	696
BstZI	CGGCCG	1 cut(s)	681
Bsu15I	ATCGAT	1 cut(s)	1057
Bsu36I	CCTNAGG	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	323, 683
BsuTUI	ATCGAT	1 cut(s)	1057
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	5 cut(s)	220, 274, 283, 919, 1031
BtsIMutI	CAGTG	1 cut(s)	987
Cac8I	GCNNGC	1 cut(s)	1073
CciNI	GCGGCCGC	1 cut(s)	681
CfoI	GCGC	1 cut(s)	781
Cfr9I	CCCGGG	1 cut(s)	229
ClaI	ATCGAT	1 cut(s)	1057
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	199, 253
CviAII	CATG	3 cut(s)	238, 346, 999
CviQI	GTAC	2 cut(s)	199, 253
DdeI	CTNAG	3 cut(s)	428, 733, 1032
DpnI	GATC	2 cut(s)	698, 942
DpnII	GATC	2 cut(s)	696, 940
DraI	TTTAAA	1 cut(s)	619
DrdI	GACNNNNNNGTC	1 cut(s)	650
DseDI	GACNNNNNNGTC	1 cut(s)	650
EaeI	YGGCCR	2 cut(s)	321, 681
EagI	CGGCCG	1 cut(s)	681
Eam1104I	CTCTTC	2 cut(s)	105, 249
EarI	CTCTTC	2 cut(s)	105, 249
EciI	GGCGGA	1 cut(s)	237
EclXI	CGGCCG	1 cut(s)	681
Eco24I	GRGCYC	1 cut(s)	310
Eco52I	CGGCCG	1 cut(s)	681
Eco81I	CCTNAGG	1 cut(s)	733
Eco88I	CYCGRG	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	943
EcoT38I	GRGCYC	1 cut(s)	310
Esp3I	CGTCTC	2 cut(s)	475, 499
FaeI	CATG	3 cut(s)	241, 349, 1002
FatI	CATG	3 cut(s)	237, 345, 998
FauI	CCCGC	1 cut(s)	1118
FauNDI	CATATG	1 cut(s)	1008
FblI	GTMKAC	3 cut(s)	34, 43, 1003
Fnu4HI	GCNGC	7 cut(s)	16, 19, 63, 153, 681, 684, 726
FokI	GGATG	5 cut(s)	207, 261, 270, 926, 1038
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	7 cut(s)	16, 19, 63, 153, 681, 684, 726
FspBI	CTAG	1 cut(s)	587
FspI	TGCGCA	1 cut(s)	780
GlaI	GCGC	1 cut(s)	780
GluI	GCNGC	7 cut(s)	16, 19, 63, 153, 681, 684, 726
HaeIII	GGCC	2 cut(s)	323, 683
HapII	CCGG	6 cut(s)	188, 230, 446, 455, 498, 1137
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	781
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	3 cut(s)	241, 349, 1002
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HincII	GTYRAC	2 cut(s)	44, 1004
HindII	GTYRAC	2 cut(s)	44, 1004
HinfI	GANTC	5 cut(s)	361, 394, 422, 530, 920
HpaII	CCGG	6 cut(s)	188, 230, 446, 455, 498, 1137
HphI	GGTGA	3 cut(s)	38, 752, 847
Hpy166II	GTNNAC	5 cut(s)	35, 44, 193, 1004, 1108
Hpy188I	TCNGA	4 cut(s)	535, 612, 973, 1050
Hpy188III	TCNNGA	5 cut(s)	391, 415, 498, 587, 595
Hpy8I	GTNNAC	5 cut(s)	35, 44, 193, 1004, 1108
Hpy99I	CGWCG	3 cut(s)	45, 48, 407
HpyAV	CCTTC	5 cut(s)	23, 99, 412, 495, 799
HpyCH4III	ACNGT	5 cut(s)	493, 904, 991, 1112, 1153
HpyCH4IV	ACGT	4 cut(s)	369, 405, 479, 663
HpyCH4V	TGCA	4 cut(s)	488, 543, 877, 1071
HpyF10VI	GCNNNNNNNGC	6 cut(s)	247, 314, 716, 725, 932, 1068
HpyF3I	CTNAG	3 cut(s)	428, 733, 1032
HpySE526I	ACGT	4 cut(s)	369, 405, 479, 663
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	3 cut(s)	241, 349, 1002
HspAI	GCGC	1 cut(s)	779
Kpn2I	TCCGGA	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	696, 940
LmnI	GCTCC	4 cut(s)	70, 233, 313, 733
Lsp1109I	GCAGC	4 cut(s)	27, 30, 139, 737
LweI	GCATC	4 cut(s)	292, 475, 922, 1049
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	4 cut(s)	369, 405, 479, 663
MaeIII	GTNAC	5 cut(s)	157, 341, 388, 398, 1112
MalI	GATC	2 cut(s)	698, 942
MboI	GATC	2 cut(s)	696, 940
MflI	RGATCY	1 cut(s)	696
MhlI	GDGCHC	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	323
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	355, 431
MmeI	TCCRAC	1 cut(s)	292
Mox20I	TGGCCA	1 cut(s)	323
MroI	TCCGGA	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	5 cut(s)	408, 618, 714, 822, 855
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	2 cut(s)	21, 926
MspI	CCGG	6 cut(s)	188, 230, 446, 455, 498, 1137
MspR9I	CCNGG	5 cut(s)	230, 231, 446, 456, 945
MssI	GTTTAAAC	1 cut(s)	619
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	945
MwoI	GCNNNNNNNGC	6 cut(s)	247, 314, 716, 725, 932, 1068
NciI	CCSGG	4 cut(s)	230, 231, 446, 456
NdeI	CATATG	1 cut(s)	1008
NdeII	GATC	2 cut(s)	696, 940
NlaIII	CATG	3 cut(s)	241, 349, 1002
NlaIV	GGNNCC	3 cut(s)	66, 235, 309
NmuCI	GTSAC	2 cut(s)	341, 388
NotI	GCGGCCGC	1 cut(s)	681
NsbI	TGCGCA	1 cut(s)	780
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	3 cut(s)	394, 530, 920
Pfl23II	CGTACG	1 cut(s)	252
PflFI	GACNNNGTC	2 cut(s)	39, 606
PkrI	GCNGC	7 cut(s)	17, 20, 64, 154, 682, 685, 727
PleI	GAGTC	2 cut(s)	355, 430
PmeI	GTTTAAAC	1 cut(s)	619
PpsI	GAGTC	2 cut(s)	355, 430
Psp6I	CCWGG	1 cut(s)	943
PspGI	CCWGG	1 cut(s)	943
PspLI	CGTACG	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	66, 235, 309
PsuI	RGATCY	1 cut(s)	696
PsyI	GACNNNGTC	2 cut(s)	39, 606
PvuII	CAGCTG	1 cut(s)	926
RsaI	GTAC	2 cut(s)	200, 254
RsaNI	GTAC	2 cut(s)	199, 253
SalI	GTCGAC	2 cut(s)	42, 1002
SaqAI	TTAA	5 cut(s)	408, 618, 714, 822, 855
SatI	GCNGC	7 cut(s)	16, 19, 63, 153, 681, 684, 726
Sau3AI	GATC	2 cut(s)	696, 940
SchI	GAGTC	2 cut(s)	355, 431
ScrFI	CCNGG	5 cut(s)	230, 231, 446, 456, 945
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	4 cut(s)	292, 475, 922, 1049
SfcI	CTRYAG	1 cut(s)	120
SgrDI	CGTCGACG	1 cut(s)	42
SmaI	CCCGGG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	413, 789
SmoI	CTYRAG	2 cut(s)	413, 789
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	5 cut(s)	228, 229, 444, 454, 943
TaaI	ACNGT	5 cut(s)	493, 904, 991, 1112, 1153
TaiI	ACGT	4 cut(s)	372, 408, 482, 666
TaqI	TCGA	5 cut(s)	43, 594, 770, 1003, 1057
TaqII	GACCGA	1 cut(s)	640
TauI	GCSGC	3 cut(s)	65, 683, 686
TfiI	GAWTC	3 cut(s)	394, 530, 920
Tru1I	TTAA	5 cut(s)	408, 618, 714, 822, 855
Tru9I	TTAA	5 cut(s)	408, 618, 714, 822, 855
TscAI	CASTG	1 cut(s)	994
TseFI	GTSAC	2 cut(s)	341, 388
TseI	GCWGC	4 cut(s)	15, 18, 152, 725
Tsp45I	GTSAC	2 cut(s)	341, 388
TspDTI	ATGAA	1 cut(s)	762
TspGWI	ACGGA	1 cut(s)	1134
TspMI	CCCGGG	1 cut(s)	229
TspRI	CASTG	1 cut(s)	994
Tth111I	GACNNNGTC	2 cut(s)	39, 606
XbaI	TCTAGA	1 cut(s)	586
XmaI	CCCGGG	1 cut(s)	229
XmiI	GTMKAC	3 cut(s)	34, 43, 1003
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.