Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011828

Physical Location & Seq

Genomic Coordinates Forward (+)

34487747 .. 34491107

Gene Structure 3361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGGAAACATGGGCAGTAGTAGAGGCAACTCCTCCCGCCGGAGACACCACCACAACCGCCAGAGCCACCCGTCTCCGCCGCCACCGGCCCCACCACAGCCCGAAATCTCCGCCAACCGCTACGTCTTCGCGGCCGCGACGCCGTACCCTGCTCAGTACCCGAACCAAAACCCGCCGCAATACCCGAACCCGAACCAGGCCCAGTATTTCCAGTACCCGGGTTACTACCCGCCGGCGCCACTGCCGGCGCCGTACGATCACCACCACCGGGTGCCGCATCCGCAGATGGACCCGGCCCAGGCGAATTGGGCCGGCGGGAGGTACCGGTGCGGGCCGGTAATGCAGGCTCCGACGCCGTACGTGGAGCACCAGAAGGCGGTGACGATAAGGAACGATGTGAATCTGAAGAAGGAGTCTTTGAGGGTTGAACCGGATGAGGAAAACCCCGGGAGCTTTCTGTTGTCTTTCACTTTTGACGCCACAGTTGCTGGGAGGATTGGTAGAATTTGGTTAGTTTGTGATCAATGGGGTAGTTTGGTTACTGGATATAGAGAAAAGATTGAGATGTCAGAGCAAAGTGTTGTTTTATATTGTTACAGTCTGTCCCTAGGTTGTGGACCTTTTCCCAGTACTGAAGAGGCAAATAGATTCAGATTGATGGAATTTGAACCTTGCTTGAGTGAGAGGCAGAACTGTCTTGACTATGGCGATGAGGGAGGTGTGGATGGTGACAACTACATCACCATCATCTTCTTTGCAAAGGAAGGTGAGGACTGTAACCTGACACCAACGAAGTTTAACCTCCTCCCACCTGTGACAGTACACTTTCAACAAGGCCTGGGCCAGAAGTTCAAACAACCCCCTGGAACTGGAATTAACTTCTCAATGTTTGACGAGACAGAGTTACTGAAAGTAGCTGGCTTGGATATCTATCCTCTAGCAGTGAAGGCAGAGGCATCCCCACCTGAGCATGATGGATCAGAGGGAAACTCTGTATCTGTAGCAACGAACTCCCAGATAACTCAGGCTGTATTTGAGAGGGAGAAAGGTGAATTCCAGGTGAGGGTTGTCAAGCAGATTCTTTGGGTGAGTGGGATGAGGTATGAACTACAGGAGATATATGGAATTGGTAATTCAGTCGAGGATGACTTGGACGGGAACGATCCAGGAAAAGAATGCGTCATTTGCCTGTCTGAACCACGGGACACAACTGTTCTTCCATGTCGGCACATGTGTATGTGCAGTGGGTGTGCCAAGGTTTTGAGATACCAGACAAATCGATGTCCAATTTGCCGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTCAACAATGGTCCTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005829 GO:0005886 GO:0006464 GO:0006513 GO:0006807 GO:0006810 GO:0007034 GO:0007041 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008277 GO:0008333 GO:0008589 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016192 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0032446 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043949 GO:0043951 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045744 GO:0045879 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055081 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080144 GO:0097305 GO:0097306 GO:0097708 GO:0140096 GO:1901527 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

449

Amino Acids

50.31

Weight (kDa)

5.54

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNF157-like_N	PF26192	133 - 171	1.1e-10	RNF157-like N-terminal domain
RNF157-like_N	PF26192	245 - 370	1e-50	RNF157-like N-terminal domain
zf-C3HC4_3	PF13920	391 - 437	2.1e-16	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	392 - 432	5.6e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09770 AT3G09770
fragaria_vesca	FvH4_6g15750
malus_domestica	MD04G1099100.v1.1 MD12G1119700.v1.1
prunus_persica	Prupe.6G237500_v2.0.a1 Prupe.6G237500_v2.0.a1
pyrus_communis	pycom04g09400
rosa_chinensis	RchiOBHm_Chr3g0469461
rosa_laevigata	RLG00000024348
rosa_multiflora	Rmu_sc0005274.1_g000003 Rmu_sc0008852.1_g000003
rosa_roxburghii	Rroxscaffold_6G00411870
rosa_rugosa	Rorug03G0101900
rosa_samantha	Rh3AG150900 Rh3BG174600 Rh3CG165600 Rh3DG200800
rosa_wichuraiana	Rw3G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	4 cut(s)	235, 247, 271, 321
AccII	CGCG	2 cut(s)	131, 137
AclWI	GGATC	2 cut(s)	985, 1157
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	3 cut(s)	504, 662, 1052
AcuI	CTGAAG	2 cut(s)	425, 654
AcyI	GRCGYC	5 cut(s)	140, 236, 248, 353, 477
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	8 cut(s)	146, 158, 215, 254, 323, 359, 631, 822
AfiI	CCNNNNNNNGG	9 cut(s)	39, 196, 217, 268, 298, 318, 376, 869, 1063
AflIII	ACRYGT	1 cut(s)	1230
AgeI	ACCGGT	1 cut(s)	324
AgsI	TTSAA	4 cut(s)	428, 668, 830, 853
AjnI	CCWGG	6 cut(s)	195, 297, 837, 862, 1056, 1165
AluBI	AGCT	2 cut(s)	453, 917
AluI	AGCT	2 cut(s)	453, 917
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	3 cut(s)	37, 78, 890
AlwI	GGATC	2 cut(s)	985, 1157
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	2 cut(s)	217, 446
AoxI	GGCC	8 cut(s)	87, 132, 198, 294, 309, 332, 835, 841
ApoI	RAATTY	3 cut(s)	504, 662, 1052
AsiGI	ACCGGT	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	321
AspA2I	CCTAGG	1 cut(s)	607
AspLEI	GCGC	2 cut(s)	238, 250
AspS9I	GGNCC	9 cut(s)	88, 199, 289, 295, 309, 332, 617, 841, 1337
AsuC2I	CCSGG	6 cut(s)	218, 219, 269, 293, 447, 448
AsuHPI	GGTGA	8 cut(s)	251, 391, 733, 740, 779, 1061, 1072, 1099
AvaI	CYCGRG	2 cut(s)	217, 446
AvaII	GGWCC	3 cut(s)	289, 617, 1337
AvrII	CCTAGG	1 cut(s)	607
AxyI	CCTNAGG	1 cut(s)	1341
BanI	GGYRCC	4 cut(s)	235, 247, 271, 321
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	369
BccI	CCATC	5 cut(s)	280, 652, 719, 752, 968
BceAI	ACGGC	3 cut(s)	127, 235, 340
BciT130I	CCWGG	6 cut(s)	197, 299, 839, 864, 1058, 1167
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	6 cut(s)	218, 219, 269, 293, 447, 448
BcoDI	GTCTC	3 cut(s)	37, 78, 890
BfaI	CTAG	2 cut(s)	608, 938
BfmI	CTRYAG	2 cut(s)	999, 1109
BfoI	RGCGCY	2 cut(s)	239, 251
BisI	GCNGC	5 cut(s)	80, 132, 135, 176, 275
BlnI	CCTAGG	1 cut(s)	607
BlsI	GCNGC	5 cut(s)	81, 133, 136, 177, 276
BmcAI	AGTACT	1 cut(s)	631
Bme18I	GGWCC	3 cut(s)	289, 617, 1337
BmeT110I	CYCGRG	2 cut(s)	217, 446
BmgT120I	GGNCC	9 cut(s)	88, 199, 289, 295, 309, 332, 617, 841, 1337
BmiI	GGNNCC	7 cut(s)	90, 237, 249, 273, 291, 323, 348
BmrI	ACTGGG	2 cut(s)	196, 621
BmsI	GCATC	2 cut(s)	286, 965
BmuI	ACTGGG	2 cut(s)	196, 621
BpiI	GAAGAC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	974, 1006
Bpu10I	CCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	1 cut(s)	697
BpuMI	CCSGG	6 cut(s)	218, 219, 269, 293, 447, 448
Bsa29I	ATCGAT	1 cut(s)	1279
BsaAI	YACGTR	1 cut(s)	361
BsaBI	GATNNNNATC	2 cut(s)	399, 930
BsaHI	GRCGYC	5 cut(s)	140, 236, 248, 353, 477
BsaJI	CCNNGG	9 cut(s)	217, 297, 445, 446, 607, 838, 862, 1199, 1254
BsaWI	WCCGGW	2 cut(s)	324, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bsc4I	CCNNNNNNNGG	9 cut(s)	39, 196, 217, 268, 298, 318, 376, 869, 1063
Bse118I	RCCGGY	6 cut(s)	85, 232, 244, 311, 324, 334
Bse1I	ACTGG	6 cut(s)	202, 211, 547, 627, 874, 1301
Bse21I	CCTNAGG	1 cut(s)	1341
Bse8I	GATNNNNATC	2 cut(s)	399, 930
BseBI	CCWGG	6 cut(s)	197, 299, 839, 864, 1058, 1167
BseCI	ATCGAT	1 cut(s)	1279
BseDI	CCNNGG	9 cut(s)	217, 297, 445, 446, 607, 838, 862, 1199, 1254
BseGI	GGATG	6 cut(s)	277, 439, 730, 956, 1101, 1150
BseJI	GATNNNNATC	2 cut(s)	399, 930
BseLI	CCNNNNNNNGG	9 cut(s)	39, 196, 217, 268, 298, 318, 376, 869, 1063
BseMII	CTCAG	4 cut(s)	167, 957, 1037, 1332
BseNI	ACTGG	6 cut(s)	202, 211, 547, 627, 874, 1301
BseRI	GAGGAG	2 cut(s)	22, 794
BseX3I	CGGCCG	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	1261
Bsh1236I	CGCG	2 cut(s)	131, 137
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	8 cut(s)	89, 134, 200, 296, 311, 334, 837, 843
BshNI	GGYRCC	4 cut(s)	235, 247, 271, 321
BshTI	ACCGGT	1 cut(s)	324
BshVI	ATCGAT	1 cut(s)	1279
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	2 cut(s)	217, 446
BsiWI	CGTACG	2 cut(s)	252, 357
BslFI	GGGAC	2 cut(s)	589, 1217
BslI	CCNNNNNNNGG	9 cut(s)	39, 196, 217, 268, 298, 318, 376, 869, 1063
BsmAI	GTCTC	3 cut(s)	37, 78, 890
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	2 cut(s)	589, 1217
BsmI	GAATGC	1 cut(s)	1181
BsnI	GGCC	8 cut(s)	89, 134, 200, 296, 311, 334, 837, 843
BsoBI	CYCGRG	2 cut(s)	217, 446
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	256, 520, 977, 1162
BspANI	GGCC	8 cut(s)	89, 134, 200, 296, 311, 334, 837, 843
BspCNI	CTCAG	4 cut(s)	166, 958, 1036, 1333
BspDI	ATCGAT	1 cut(s)	1279
BspFNI	CGCG	2 cut(s)	131, 137
BspLI	GGNNCC	7 cut(s)	90, 237, 249, 273, 291, 323, 348
BspPI	GGATC	2 cut(s)	985, 1157
BspT107I	GGYRCC	4 cut(s)	235, 247, 271, 321
BsrFI	RCCGGY	6 cut(s)	85, 232, 244, 311, 324, 334
BsrI	ACTGG	6 cut(s)	202, 211, 547, 627, 874, 1301
BssAI	RCCGGY	6 cut(s)	85, 232, 244, 311, 324, 334
BssECI	CCNNGG	9 cut(s)	217, 297, 445, 446, 607, 838, 862, 1199, 1254
BssMI	GATC	4 cut(s)	256, 520, 977, 1162
BssNI	GRCGYC	5 cut(s)	140, 236, 248, 353, 477
BssT1I	CCWWGG	2 cut(s)	607, 1254
Bst2UI	CCWGG	6 cut(s)	197, 299, 839, 864, 1058, 1167
Bst4CI	ACNGT	6 cut(s)	484, 599, 695, 776, 820, 1213
Bst6I	CTCTTC	1 cut(s)	630
BstACI	GRCGYC	5 cut(s)	140, 236, 248, 353, 477
BstBAI	YACGTR	1 cut(s)	361
BstC8I	GCNNGC	6 cut(s)	234, 246, 313, 332, 345, 919
BstDEI	CTNAG	4 cut(s)	153, 966, 1023, 1341
BstDSI	CCRYGG	1 cut(s)	1199
BstF5I	GGATG	6 cut(s)	277, 439, 730, 956, 1101, 1150
BstFNI	CGCG	2 cut(s)	131, 137
BstH2I	RGCGCY	2 cut(s)	239, 251
BstHHI	GCGC	2 cut(s)	238, 250
BstKTI	GATC	4 cut(s)	259, 523, 980, 1165
BstMAI	GTCTC	3 cut(s)	37, 78, 890
BstMBI	GATC	4 cut(s)	256, 520, 977, 1162
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	6 cut(s)	280, 308, 340, 485, 947, 1185
BstNI	CCWGG	6 cut(s)	197, 299, 839, 864, 1058, 1167
BstNSI	RCATGY	1 cut(s)	1234
BstSFI	CTRYAG	2 cut(s)	999, 1109
BstUI	CGCG	2 cut(s)	131, 137
BstV2I	GAAGAC	1 cut(s)	118
BstZI	CGGCCG	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	1279
Bsu36I	CCTNAGG	1 cut(s)	1341
BsuRI	GGCC	8 cut(s)	89, 134, 200, 296, 311, 334, 837, 843
BsuTUI	ATCGAT	1 cut(s)	1279
BtgI	CCRYGG	1 cut(s)	1199
BtgZI	GCGATG	1 cut(s)	723
BtsCI	GGATG	6 cut(s)	277, 439, 730, 956, 1101, 1150
BtsI	GCAGTG	3 cut(s)	239, 948, 1249
BtsIMutI	CAGTG	3 cut(s)	239, 948, 1249
Cac8I	GCNNGC	6 cut(s)	234, 246, 313, 332, 345, 919
CaiI	CAGNNNCTG	1 cut(s)	488
CciNI	GCGGCCGC	1 cut(s)	132
CfoI	GCGC	2 cut(s)	238, 250
Cfr10I	RCCGGY	6 cut(s)	85, 232, 244, 311, 324, 334
Cfr13I	GGNCC	9 cut(s)	88, 199, 289, 295, 309, 332, 617, 841, 1337
Cfr9I	CCCGGG	2 cut(s)	217, 446
ClaI	ATCGAT	1 cut(s)	1279
CseI	GACGC	4 cut(s)	148, 361, 485, 1168
Csp6I	GTAC	8 cut(s)	145, 157, 214, 253, 322, 358, 630, 821
CspAI	ACCGGT	1 cut(s)	324
CviAII	CATG	4 cut(s)	10, 971, 1221, 1231
CviQI	GTAC	8 cut(s)	145, 157, 214, 253, 322, 358, 630, 821
DdeI	CTNAG	4 cut(s)	153, 966, 1023, 1341
DinI	GGCGCC	2 cut(s)	237, 249
DpnI	GATC	4 cut(s)	258, 522, 979, 1164
DpnII	GATC	4 cut(s)	256, 520, 977, 1162
DraIII	CACNNNGTG	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	132
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
EciI	GGCGGA	2 cut(s)	66, 100
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	607, 1254
Eco147I	AGGCCT	1 cut(s)	837
Eco32I	GATATC	1 cut(s)	928
Eco47I	GGWCC	3 cut(s)	289, 617, 1337
Eco52I	CGGCCG	1 cut(s)	132
Eco57I	CTGAAG	2 cut(s)	425, 654
Eco81I	CCTNAGG	1 cut(s)	1341
Eco88I	CYCGRG	2 cut(s)	217, 446
EcoRI	GAATTC	1 cut(s)	1052
EcoRII	CCWGG	6 cut(s)	195, 297, 837, 862, 1056, 1165
EcoRV	GATATC	1 cut(s)	928
EcoT14I	CCWWGG	2 cut(s)	607, 1254
EgeI	GGCGCC	2 cut(s)	237, 249
EheI	GGCGCC	2 cut(s)	237, 249
ErhI	CCWWGG	2 cut(s)	607, 1254
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	4 cut(s)	13, 974, 1224, 1234
FaqI	GGGAC	2 cut(s)	589, 1217
FatI	CATG	4 cut(s)	9, 970, 1220, 1230
FauI	CCCGC	5 cut(s)	44, 180, 237, 308, 323
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	5 cut(s)	80, 132, 135, 176, 275
FokI	GGATG	6 cut(s)	264, 446, 737, 943, 1108, 1157
Fsp4HI	GCNGC	5 cut(s)	80, 132, 135, 176, 275
FspBI	CTAG	2 cut(s)	608, 938
GlaI	GCGC	2 cut(s)	237, 249
GluI	GCNGC	5 cut(s)	80, 132, 135, 176, 275
GsaI	CCCAGC	1 cut(s)	492
HaeII	RGCGCY	2 cut(s)	239, 251
HaeIII	GGCC	8 cut(s)	89, 134, 200, 296, 311, 334, 837, 843
HgaI	GACGC	4 cut(s)	148, 361, 485, 1168
HhaI	GCGC	2 cut(s)	238, 250
Hin1I	GRCGYC	5 cut(s)	140, 236, 248, 353, 477
Hin1II	CATG	4 cut(s)	13, 974, 1224, 1234
Hin6I	GCGC	2 cut(s)	236, 248
HinP1I	GCGC	2 cut(s)	236, 248
HincII	GTYRAC	1 cut(s)	1330
HindII	GTYRAC	1 cut(s)	1330
HinfI	GANTC	4 cut(s)	400, 413, 648, 1078
HphI	GGTGA	8 cut(s)	251, 391, 733, 740, 779, 1061, 1072, 1099
Hpy166II	GTNNAC	3 cut(s)	617, 823, 1330
Hpy188I	TCNGA	6 cut(s)	351, 405, 571, 653, 982, 1195
Hpy188III	TCNNGA	2 cut(s)	698, 1340
Hpy8I	GTNNAC	3 cut(s)	617, 823, 1330
Hpy99I	CGWCG	2 cut(s)	142, 355
HpyAV	CCTTC	4 cut(s)	367, 403, 758, 940
HpyCH4III	ACNGT	6 cut(s)	484, 599, 695, 776, 820, 1213
HpyCH4IV	ACGT	2 cut(s)	123, 360
HpyCH4V	TGCA	3 cut(s)	343, 758, 1242
HpyF10VI	GCNNNNNNNGC	6 cut(s)	280, 308, 340, 485, 947, 1185
HpyF3I	CTNAG	4 cut(s)	153, 966, 1023, 1341
HpySE526I	ACGT	2 cut(s)	123, 360
Hsp92I	GRCGYC	5 cut(s)	140, 236, 248, 353, 477
Hsp92II	CATG	4 cut(s)	13, 974, 1224, 1234
HspAI	GCGC	2 cut(s)	236, 248
KasI	GGCGCC	2 cut(s)	235, 247
KpnI	GGTACC	1 cut(s)	325
KroI	GCCGGC	3 cut(s)	232, 244, 311
KroNI	GCCGGC	3 cut(s)	234, 246, 313
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	256, 520, 977, 1162
LmnI	GCTCC	3 cut(s)	352, 364, 450
LweI	GCATC	2 cut(s)	286, 965
MaeI	CTAG	2 cut(s)	608, 938
MaeII	ACGT	2 cut(s)	123, 360
MaeIII	GTNAC	8 cut(s)	221, 379, 538, 593, 728, 776, 814, 903
MalI	GATC	4 cut(s)	258, 522, 979, 1164
MboI	GATC	4 cut(s)	256, 520, 977, 1162
MboII	GAAGA	5 cut(s)	118, 418, 647, 742, 1208
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	8 cut(s)	304, 504, 662, 873, 1052, 1125, 1132, 1287
Mly113I	GGCGCC	2 cut(s)	236, 248
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	374
MreI	CGCCGGCG	1 cut(s)	232
MroNI	GCCGGC	3 cut(s)	232, 244, 311
MseI	TTAA	2 cut(s)	798, 876
MslI	CAYNNNNRTG	1 cut(s)	1235
Mva1269I	GAATGC	1 cut(s)	1181
MvaI	CCWGG	6 cut(s)	197, 299, 839, 864, 1058, 1167
MvnI	CGCG	2 cut(s)	131, 137
MwoI	GCNNNNNNNGC	6 cut(s)	280, 308, 340, 485, 947, 1185
NaeI	GCCGGC	3 cut(s)	234, 246, 313
NarI	GGCGCC	2 cut(s)	236, 248
NciI	CCSGG	6 cut(s)	218, 219, 269, 293, 447, 448
NdeII	GATC	4 cut(s)	256, 520, 977, 1162
NgoMIV	GCCGGC	3 cut(s)	232, 244, 311
NlaIII	CATG	4 cut(s)	13, 974, 1224, 1234
NlaIV	GGNNCC	7 cut(s)	90, 237, 249, 273, 291, 323, 348
NmuCI	GTSAC	3 cut(s)	379, 728, 814
NotI	GCGGCCGC	1 cut(s)	132
NspI	RCATGY	1 cut(s)	1234
PceI	AGGCCT	1 cut(s)	837
PciI	ACATGT	1 cut(s)	1230
PctI	GAATGC	1 cut(s)	1181
PdiI	GCCGGC	3 cut(s)	234, 246, 313
PfeI	GAWTC	3 cut(s)	400, 648, 1078
Pfl23II	CGTACG	2 cut(s)	252, 357
PfoI	TCCNGGA	1 cut(s)	1165
PinAI	ACCGGT	1 cut(s)	324
PkrI	GCNGC	5 cut(s)	81, 133, 136, 177, 276
PleI	GAGTC	1 cut(s)	421
PluTI	GGCGCC	2 cut(s)	239, 251
PpsI	GAGTC	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	361
PscI	ACATGT	1 cut(s)	1230
Psp6I	CCWGG	6 cut(s)	195, 297, 837, 862, 1056, 1165
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	6 cut(s)	195, 297, 837, 862, 1056, 1165
PspLI	CGTACG	2 cut(s)	252, 357
PspN4I	GGNNCC	7 cut(s)	90, 237, 249, 273, 291, 323, 348
PspPI	GGNCC	9 cut(s)	88, 199, 289, 295, 309, 332, 617, 841, 1337
PstNI	CAGNNNCTG	1 cut(s)	488
RsaI	GTAC	8 cut(s)	146, 158, 215, 254, 323, 359, 631, 822
RsaNI	GTAC	8 cut(s)	145, 157, 214, 253, 322, 358, 630, 821
RseI	CAYNNNNRTG	1 cut(s)	1235
SaqAI	TTAA	2 cut(s)	798, 876
SatI	GCNGC	5 cut(s)	80, 132, 135, 176, 275
Sau3AI	GATC	4 cut(s)	256, 520, 977, 1162
Sau96I	GGNCC	9 cut(s)	88, 199, 289, 295, 309, 332, 617, 841, 1337
ScaI	AGTACT	1 cut(s)	631
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	2 cut(s)	286, 965
SfcI	CTRYAG	2 cut(s)	999, 1109
SfoI	GGCGCC	2 cut(s)	237, 249
SgrAI	CRCCGGYG	1 cut(s)	232
SinI	GGWCC	3 cut(s)	289, 617, 1337
SmaI	CCCGGG	2 cut(s)	219, 448
SmiMI	CAYNNNNRTG	1 cut(s)	1235
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	8 cut(s)	304, 504, 662, 873, 1052, 1125, 1132, 1287
SseBI	AGGCCT	1 cut(s)	837
SspDI	GGCGCC	2 cut(s)	235, 247
SspMI	CTAG	2 cut(s)	608, 938
StuI	AGGCCT	1 cut(s)	837
StyI	CCWWGG	2 cut(s)	607, 1254
TaaI	ACNGT	6 cut(s)	484, 599, 695, 776, 820, 1213
TaiI	ACGT	2 cut(s)	126, 363
TaqI	TCGA	2 cut(s)	1140, 1279
TasI	AATT	8 cut(s)	304, 504, 662, 873, 1052, 1125, 1132, 1287
TatI	WGTACW	2 cut(s)	629, 820
TauI	GCSGC	5 cut(s)	82, 134, 137, 178, 277
TfiI	GAWTC	3 cut(s)	400, 648, 1078
Tru1I	TTAA	2 cut(s)	798, 876
Tru9I	TTAA	2 cut(s)	798, 876
TscAI	CASTG	3 cut(s)	246, 948, 1249
TseFI	GTSAC	3 cut(s)	379, 728, 814
Tsp45I	GTSAC	3 cut(s)	379, 728, 814
TspDTI	ATGAA	1 cut(s)	1119
TspMI	CCCGGG	2 cut(s)	217, 446
TspRI	CASTG	3 cut(s)	246, 948, 1249
VpaK11BI	GGWCC	3 cut(s)	289, 617, 1337
XapI	RAATTY	3 cut(s)	504, 662, 1052
XceI	RCATGY	1 cut(s)	1234
XmaI	CCCGGG	2 cut(s)	217, 446
XmaJI	CCTAGG	1 cut(s)	607
XspI	CTAG	2 cut(s)	608, 938
ZrmI	AGTACT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.