Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011828

Physical Location & Seq

Genomic Coordinates Forward (+)

12009778 .. 12012415

Gene Structure 2638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGAAACAGCGGAAGCAGAACAAACGGCGGCCGCCGGAGACATGGGTCCCGCCAAAACCACCCTGCTCCGCCTCCTCCGGCGCCACCTCAGCCCGAAATCTCTCAAAACCGCTACGTATTCGCAGCGGCGACTCCGTACCCCTCTCAGTACACGAACCCCAACCCGCCCCAGTACTACCAGTACCAAGGTCACTACCCGCCACAGCCCATGCCCTTGCCTCTGCCCGCTCCGTACGATCAGCACCACCGCGTCCCCTATCCCCACATGGACCCGGCCCATCCGAATTGGGCTGGCGGGCGGTACCGGTGCGGCCCGGTAATGCAGGCTCCGACGCCATACGTGGAGCACCAGAAGGCGGTAACTATAAGGAACGATGTGAATCTGAAGAAGGAGACTCTGAAGGTCGAGCCCGATGAGGAAAACCCTGGAAGCTTCCTCCTGTCCTTTGCTTTTGATGCCACTGTTGCTGGGAGCATCACCATTATCTTCTTTGCGAAAGAAGGCGAGGCCTGTAATCTGACACCAATGAAATTTAACCTTCATCCACCTGTGACAGTACATTTTGAACAAGGTCTGGGCCAGAAGTTCAGGCAGCCCCCTGGAACTGGAATTAACTTCTCAAAGTTTGAGGATACAGAGTTACTGAAAGTAGCTGACTTGGATATCTATCCTTTAGCTGTGAAGGCTGAGGCATCCCCTCCTGCCCATGATGGATCAGAGGGAAGCCCTTTGTCTGTAACAACAAACTCCCAGATAACTCAAGCTGTATTTGAAAGGGAGAAAGGTGAATTCCAAGTTAGGGTTGCCAAGCAGATTCTTTGGGTGAAGGGGATGAGGTATGAACTACAGGAGATATATGGCATTGGTAATTCAGTTGAAGGTGACGTGGACGGGAATGACCCAGGGAAAGAATGTGTAATTTGCCTATCTGAACCACAGGATACAACTGTTCTTCCATGCAGACACATGTGCATGTGCAATGGGTGTGCCAAGGTCTTGAGATTCCAAACAAACCGCTGCCCCATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTCAACGATGGCCCTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005829 GO:0005886 GO:0006464 GO:0006513 GO:0006807 GO:0006810 GO:0007034 GO:0007041 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008277 GO:0008333 GO:0008589 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016192 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0032446 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043949 GO:0043951 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045744 GO:0045879 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055081 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080144 GO:0097305 GO:0097306 GO:0097708 GO:0140096 GO:1901527 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

363

Amino Acids

40.31

Weight (kDa)

6.32

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNF157-like_N	PF26192	127 - 283	3.7e-67	RNF157-like N-terminal domain
zf-C3HC4_3	PF13920	304 - 350	3.8e-16	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	305 - 345	7.8e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09770 AT3G09770
fragaria_vesca	FvH4_6g15750
malus_domestica	MD04G1099100.v1.1 MD12G1119700.v1.1
prunus_persica	Prupe.6G237500_v2.0.a1 Prupe.6G237500_v2.0.a1
pyrus_communis	pycom04g09400
rosa_chinensis	RchiOBHm_Chr3g0469461
rosa_laevigata	RLG00000024348
rosa_multiflora	Rmu_sc0005274.1_g000003 Rmu_sc0008852.1_g000003
rosa_roxburghii	Rroxscaffold_6G00411870
rosa_rugosa	Rorug03G0101900
rosa_samantha	Rh3AG150900 Rh3BG174600 Rh3CG165600 Rh3DG200800
rosa_wichuraiana	Rw3G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	303
AccB1I	GGYRCC	2 cut(s)	82, 303
AccBSI	CCGCTC	1 cut(s)	230
AccII	CGCG	1 cut(s)	252
AclWI	GGATC	1 cut(s)	724
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	2 cut(s)	533, 791
AcuI	CTGAAG	2 cut(s)	407, 422
AcyI	GRCGYC	2 cut(s)	83, 335
AfaI	GTAC	7 cut(s)	140, 152, 176, 185, 236, 305, 561
AfiI	CCNNNNNNNGG	3 cut(s)	358, 608, 802
AflIII	ACRYGT	1 cut(s)	969
AgeI	ACCGGT	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	569, 776, 881
AjiI	CACGTC	1 cut(s)	889
AjnI	CCWGG	3 cut(s)	427, 601, 904
AluBI	AGCT	4 cut(s)	435, 656, 680, 767
AluI	AGCT	4 cut(s)	435, 656, 680, 767
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	2 cut(s)	34, 389
AlwI	GGATC	1 cut(s)	724
AoxI	GGCC	6 cut(s)	31, 276, 313, 510, 580, 1075
ApeKI	GCWGC	3 cut(s)	125, 595, 1020
ApoI	RAATTY	2 cut(s)	533, 791
AsiGI	ACCGGT	1 cut(s)	306
Asp718I	GGTACC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	6 cut(s)	48, 271, 277, 314, 580, 1076
AsuC2I	CCSGG	2 cut(s)	275, 317
AsuHPI	GGTGA	4 cut(s)	472, 800, 838, 896
AvaII	GGWCC	2 cut(s)	48, 271
AxyI	CCTNAGG	1 cut(s)	1080
BaeI	ACNNNNGTAYC	2 cut(s)	936, 969
BanI	GGYRCC	2 cut(s)	82, 303
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	351
BbvCI	CCTCAGC	2 cut(s)	90, 690
BbvI	GCAGC	3 cut(s)	137, 607, 1007
BccI	CCATC	3 cut(s)	288, 707, 1067
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	3 cut(s)	429, 603, 906
BciVI	GTATCC	2 cut(s)	628, 937
BcnI	CCSGG	2 cut(s)	275, 317
BcoDI	GTCTC	2 cut(s)	34, 389
BfmI	CTRYAG	1 cut(s)	848
BfoI	RGCGCY	1 cut(s)	86
BfuI	GTATCC	2 cut(s)	628, 937
BisI	GCNGC	7 cut(s)	31, 34, 126, 129, 313, 596, 1021
BlsI	GCNGC	7 cut(s)	32, 35, 127, 130, 314, 597, 1022
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	5 cut(s)	275, 317, 429, 603, 906
Bme18I	GGWCC	2 cut(s)	48, 271
BmgBI	CACGTC	1 cut(s)	889
BmgT120I	GGNCC	6 cut(s)	48, 271, 277, 314, 580, 1076
BmiI	GGNNCC	6 cut(s)	49, 50, 84, 273, 305, 330
BmrFI	CCNGG	5 cut(s)	275, 317, 429, 603, 906
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	3 cut(s)	448, 486, 704
BmuI	ACTGGG	1 cut(s)	166
BoxI	GACNNNNGTC	1 cut(s)	46
Bpu10I	CCTNAGC	2 cut(s)	90, 690
BpuEI	CTTGAG	2 cut(s)	747, 1021
BpuMI	CCSGG	2 cut(s)	275, 317
BsaAI	YACGTR	2 cut(s)	118, 343
BsaBI	GATNNNNATC	2 cut(s)	381, 669
BsaHI	GRCGYC	2 cut(s)	83, 335
BsaJI	CCNNGG	6 cut(s)	187, 427, 601, 904, 905, 993
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	3 cut(s)	358, 608, 802
Bse118I	RCCGGY	1 cut(s)	306
Bse1I	ACTGG	4 cut(s)	172, 181, 613, 1040
Bse21I	CCTNAGG	1 cut(s)	1080
Bse3DI	GCAATG	1 cut(s)	988
Bse8I	GATNNNNATC	2 cut(s)	381, 669
BseBI	CCWGG	3 cut(s)	429, 603, 906
BseDI	CCNNGG	6 cut(s)	187, 427, 601, 904, 905, 993
BseGI	GGATG	4 cut(s)	280, 544, 695, 840
BseJI	GATNNNNATC	2 cut(s)	381, 669
BseLI	CCNNNNNNNGG	3 cut(s)	358, 608, 802
BseMI	GCAATG	1 cut(s)	988
BseMII	CTCAG	4 cut(s)	104, 161, 681, 1071
BseNI	ACTGG	4 cut(s)	172, 181, 613, 1040
BseRI	GAGGAG	1 cut(s)	66
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	137, 607, 1007
BseYI	CCCAGC	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	6 cut(s)	33, 278, 315, 512, 582, 1077
BshNI	GGYRCC	2 cut(s)	82, 303
BshTI	ACCGGT	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	5 cut(s)	37, 80, 275, 307, 317
BsiWI	CGTACG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	34, 239
BslI	CCNNNNNNNGG	3 cut(s)	358, 608, 802
BsmAI	GTCTC	2 cut(s)	34, 389
BsmFI	GGGAC	2 cut(s)	34, 239
BsnI	GGCC	6 cut(s)	33, 278, 315, 512, 582, 1077
Bsp1286I	GDGCHC	2 cut(s)	351, 414
Bsp143I	GATC	2 cut(s)	238, 716
BspANI	GGCC	6 cut(s)	33, 278, 315, 512, 582, 1077
BspCNI	CTCAG	4 cut(s)	103, 160, 682, 1072
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	6 cut(s)	49, 50, 84, 273, 305, 330
BspPI	GGATC	1 cut(s)	724
BspT107I	GGYRCC	2 cut(s)	82, 303
BsrBI	CCGCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	988
BsrFI	RCCGGY	1 cut(s)	306
BsrI	ACTGG	4 cut(s)	172, 181, 613, 1040
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	6 cut(s)	187, 427, 601, 904, 905, 993
BssMI	GATC	2 cut(s)	238, 716
BssNI	GRCGYC	2 cut(s)	83, 335
BssT1I	CCWWGG	2 cut(s)	187, 993
Bst2UI	CCWGG	3 cut(s)	429, 603, 906
Bst4CI	ACNGT	3 cut(s)	466, 559, 952
BstACI	GRCGYC	2 cut(s)	83, 335
BstBAI	YACGTR	2 cut(s)	118, 343
BstC8I	GCNNGC	4 cut(s)	228, 295, 299, 327
BstDEI	CTNAG	4 cut(s)	90, 147, 690, 1080
BstF5I	GGATG	4 cut(s)	280, 544, 695, 840
BstFNI	CGCG	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	241, 719
BstMAI	GTCTC	2 cut(s)	34, 389
BstMBI	GATC	2 cut(s)	238, 716
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 458, 467, 686, 1029
BstNI	CCWGG	3 cut(s)	429, 603, 906
BstNSI	RCATGY	2 cut(s)	973, 979
BstPAI	GACNNNNGTC	1 cut(s)	46
BstSCI	CCNGG	5 cut(s)	273, 315, 427, 601, 904
BstSFI	CTRYAG	1 cut(s)	848
BstSNI	TACGTA	1 cut(s)	118
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	137, 607, 1007
BstZI	CGGCCG	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	1080
BsuI	GTATCC	2 cut(s)	628, 937
BsuRI	GGCC	6 cut(s)	33, 278, 315, 512, 582, 1077
BtrI	CACGTC	1 cut(s)	889
BtsCI	GGATG	4 cut(s)	280, 544, 695, 840
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	4 cut(s)	228, 295, 299, 327
CciNI	GCGGCCGC	1 cut(s)	31
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	6 cut(s)	48, 271, 277, 314, 580, 1076
CseI	GACGC	2 cut(s)	241, 343
Csp6I	GTAC	7 cut(s)	139, 151, 175, 184, 235, 304, 560
CspAI	ACCGGT	1 cut(s)	306
CviAII	CATG	7 cut(s)	44, 211, 268, 710, 960, 970, 976
CviQI	GTAC	7 cut(s)	139, 151, 175, 184, 235, 304, 560
DdeI	CTNAG	4 cut(s)	90, 147, 690, 1080
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	2 cut(s)	240, 718
DpnII	GATC	2 cut(s)	238, 716
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	31
Eco105I	TACGTA	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	187, 993
Eco147I	AGGCCT	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	667
Eco47I	GGWCC	2 cut(s)	48, 271
Eco52I	CGGCCG	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	407, 422
Eco81I	CCTNAGG	1 cut(s)	1080
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	791
EcoRII	CCWGG	3 cut(s)	427, 601, 904
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	2 cut(s)	187, 993
EcoT38I	GRGCYC	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	187, 993
FaeI	CATG	7 cut(s)	47, 214, 271, 713, 963, 973, 979
FaqI	GGGAC	2 cut(s)	34, 239
FatI	CATG	7 cut(s)	43, 210, 267, 709, 959, 969, 975
FauI	CCCGC	5 cut(s)	59, 174, 207, 235, 290
Fnu4HI	GCNGC	7 cut(s)	31, 34, 126, 129, 313, 596, 1021
FokI	GGATG	4 cut(s)	267, 531, 682, 847
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	7 cut(s)	31, 34, 126, 129, 313, 596, 1021
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	7 cut(s)	31, 34, 126, 129, 313, 596, 1021
GsaI	CCCAGC	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	6 cut(s)	33, 278, 315, 512, 582, 1077
HapII	CCGG	5 cut(s)	37, 80, 275, 307, 317
HgaI	GACGC	2 cut(s)	241, 343
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	2 cut(s)	83, 335
Hin1II	CATG	7 cut(s)	47, 214, 271, 713, 963, 973, 979
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	5 cut(s)	133, 382, 397, 817, 1005
HpaII	CCGG	5 cut(s)	37, 80, 275, 307, 317
HphI	GGTGA	4 cut(s)	472, 800, 838, 896
Hpy166II	GTNNAC	3 cut(s)	153, 892, 1069
Hpy188I	TCNGA	7 cut(s)	285, 333, 387, 402, 522, 721, 934
Hpy188III	TCNNGA	1 cut(s)	1000
Hpy8I	GTNNAC	3 cut(s)	153, 892, 1069
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	8 cut(s)	349, 385, 397, 497, 551, 679, 823, 875
HpyCH4III	ACNGT	3 cut(s)	466, 559, 952
HpyCH4IV	ACGT	3 cut(s)	117, 342, 888
HpyCH4V	TGCA	5 cut(s)	325, 963, 975, 981, 1032
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 458, 467, 686, 1029
HpyF3I	CTNAG	4 cut(s)	90, 147, 690, 1080
HpySE526I	ACGT	3 cut(s)	117, 342, 888
Hsp92I	GRCGYC	2 cut(s)	83, 335
Hsp92II	CATG	7 cut(s)	47, 214, 271, 713, 963, 973, 979
HspAI	GCGC	1 cut(s)	83
KasI	GGCGCC	1 cut(s)	82
KflI	GGGWCCC	1 cut(s)	48
KpnI	GGTACC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	238, 716
LmnI	GCTCC	5 cut(s)	73, 235, 334, 346, 474
Lsp1109I	GCAGC	3 cut(s)	137, 607, 1007
LweI	GCATC	3 cut(s)	448, 486, 704
MaeII	ACGT	3 cut(s)	117, 342, 888
MaeIII	GTNAC	6 cut(s)	191, 361, 553, 642, 739, 884
MalI	GATC	2 cut(s)	240, 718
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	2 cut(s)	238, 716
MboII	GAAGA	3 cut(s)	400, 481, 947
MhlI	GDGCHC	2 cut(s)	351, 414
MluCI	AATT	6 cut(s)	286, 533, 612, 791, 871, 921
Mly113I	GGCGCC	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	127, 391
MmeI	TCCRAC	1 cut(s)	356
MseI	TTAA	2 cut(s)	537, 615
MslI	CAYNNNNRTG	1 cut(s)	974
MspA1I	CMGCKG	3 cut(s)	12, 128, 1020
MspI	CCGG	5 cut(s)	37, 80, 275, 307, 317
MspR9I	CCNGG	5 cut(s)	275, 317, 429, 603, 906
MvaI	CCWGG	3 cut(s)	429, 603, 906
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	5 cut(s)	91, 458, 467, 686, 1029
NarI	GGCGCC	1 cut(s)	83
NciI	CCSGG	2 cut(s)	275, 317
NdeII	GATC	2 cut(s)	238, 716
NlaIII	CATG	7 cut(s)	47, 214, 271, 713, 963, 973, 979
NlaIV	GGNNCC	6 cut(s)	49, 50, 84, 273, 305, 330
NmuCI	GTSAC	3 cut(s)	191, 553, 884
NotI	GCGGCCGC	1 cut(s)	31
NspI	RCATGY	2 cut(s)	973, 979
PasI	CCCWGGG	1 cut(s)	905
PceI	AGGCCT	1 cut(s)	512
PciI	ACATGT	1 cut(s)	969
PfeI	GAWTC	3 cut(s)	382, 817, 1005
Pfl23II	CGTACG	1 cut(s)	234
PinAI	ACCGGT	1 cut(s)	306
PkrI	GCNGC	7 cut(s)	32, 35, 127, 130, 314, 597, 1022
PleI	GAGTC	2 cut(s)	127, 391
PluTI	GGCGCC	1 cut(s)	86
PpsI	GAGTC	2 cut(s)	127, 391
Ppu21I	YACGTR	2 cut(s)	118, 343
PpuMI	RGGWCCY	1 cut(s)	48
PscI	ACATGT	1 cut(s)	969
PshAI	GACNNNNGTC	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	3 cut(s)	427, 601, 904
PspFI	CCCAGC	1 cut(s)	470
PspGI	CCWGG	3 cut(s)	427, 601, 904
PspLI	CGTACG	1 cut(s)	234
PspN4I	GGNNCC	6 cut(s)	49, 50, 84, 273, 305, 330
PspPI	GGNCC	6 cut(s)	48, 271, 277, 314, 580, 1076
PspPPI	RGGWCCY	1 cut(s)	48
RsaI	GTAC	7 cut(s)	140, 152, 176, 185, 236, 305, 561
RsaNI	GTAC	7 cut(s)	139, 151, 175, 184, 235, 304, 560
RseI	CAYNNNNRTG	1 cut(s)	974
SaqAI	TTAA	2 cut(s)	537, 615
SatI	GCNGC	7 cut(s)	31, 34, 126, 129, 313, 596, 1021
Sau3AI	GATC	2 cut(s)	238, 716
Sau96I	GGNCC	6 cut(s)	48, 271, 277, 314, 580, 1076
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	2 cut(s)	127, 391
ScrFI	CCNGG	5 cut(s)	275, 317, 429, 603, 906
SduI	GDGCHC	2 cut(s)	351, 414
SfaNI	GCATC	3 cut(s)	448, 486, 704
SfcI	CTRYAG	1 cut(s)	848
SfoI	GGCGCC	1 cut(s)	84
SinI	GGWCC	2 cut(s)	48, 271
SmiMI	CAYNNNNRTG	1 cut(s)	974
SmlI	CTYRAG	2 cut(s)	762, 1000
SmoI	CTYRAG	2 cut(s)	762, 1000
SnaBI	TACGTA	1 cut(s)	118
Sse9I	AATT	6 cut(s)	286, 533, 612, 791, 871, 921
SseBI	AGGCCT	1 cut(s)	512
SspDI	GGCGCC	1 cut(s)	82
StuI	AGGCCT	1 cut(s)	512
StyD4I	CCNGG	5 cut(s)	273, 315, 427, 601, 904
StyI	CCWWGG	2 cut(s)	187, 993
TaaI	ACNGT	3 cut(s)	466, 559, 952
TaiI	ACGT	3 cut(s)	120, 345, 891
TaqI	TCGA	1 cut(s)	408
TasI	AATT	6 cut(s)	286, 533, 612, 791, 871, 921
TatI	WGTACW	3 cut(s)	150, 174, 559
TauI	GCSGC	4 cut(s)	33, 36, 131, 315
TfiI	GAWTC	3 cut(s)	382, 817, 1005
Tru1I	TTAA	2 cut(s)	537, 615
Tru9I	TTAA	2 cut(s)	537, 615
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	3 cut(s)	191, 553, 884
TseI	GCWGC	3 cut(s)	125, 595, 1020
Tsp45I	GTSAC	3 cut(s)	191, 553, 884
TspDTI	ATGAA	3 cut(s)	533, 545, 858
TspGWI	ACGGA	2 cut(s)	126, 222
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	2 cut(s)	48, 271
XapI	RAATTY	2 cut(s)	533, 791
XceI	RCATGY	2 cut(s)	973, 979
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.