E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G09770 AT3G09770 |
| fragaria_vesca | FvH4_6g15750 |
| malus_domestica | MD04G1099100.v1.1 MD12G1119700.v1.1 |
| prunus_persica | Prupe.6G237500_v2.0.a1 Prupe.6G237500_v2.0.a1 |
| pyrus_communis | pycom04g09400 |
| rosa_chinensis | RchiOBHm_Chr3g0469461 |
| rosa_laevigata | RLG00000024348 |
| rosa_multiflora | Rmu_sc0005274.1_g000003 Rmu_sc0008852.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00411870 |
| rosa_rugosa | Rorug03G0101900 |
| rosa_samantha | Rh3AG150900 Rh3BG174600 Rh3CG165600 Rh3DG200800 |
| rosa_wichuraiana | Rw3G014250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 719 |
| AarI | CACCTGC | 1 cut(s) | 184 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 954 |
| Acc36I | ACCTGC | 1 cut(s) | 184 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 45 |
| AccBSI | CCGCTC | 1 cut(s) | 133 |
| AccI | GTMKAC | 1 cut(s) | 422 |
| AciI | CCGC | 2 cut(s) | 131, 982 |
| AclWI | GGATC | 2 cut(s) | 826, 1022 |
| AcsI | RAATTY | 2 cut(s) | 566, 680 |
| AcuI | CTGAAG | 1 cut(s) | 132 |
| AcyI | GRCGYC | 1 cut(s) | 949 |
| AfaI | GTAC | 3 cut(s) | 11, 236, 844 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 45, 450 |
| AgsI | TTSAA | 3 cut(s) | 464, 566, 1171 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1201 |
| AjiI | CACGTC | 1 cut(s) | 655 |
| AjnI | CCWGG | 2 cut(s) | 44, 933 |
| Alw21I | GWGCWC | 3 cut(s) | 875, 977, 1155 |
| Alw26I | GTCTC | 4 cut(s) | 316, 525, 770, 995 |
| AlwI | GGATC | 2 cut(s) | 826, 1022 |
| AoxI | GGCC | 2 cut(s) | 453, 936 |
| ApeKI | GCWGC | 3 cut(s) | 93, 502, 787 |
| ApoI | RAATTY | 2 cut(s) | 566, 680 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1107 |
| AspS9I | GGNCC | 4 cut(s) | 278, 453, 474, 937 |
| AsuC2I | CCSGG | 2 cut(s) | 445, 882 |
| AsuHPI | GGTGA | 5 cut(s) | 197, 208, 281, 760, 870 |
| AvaII | GGWCC | 2 cut(s) | 278, 474 |
| BanII | GRGCYC | 2 cut(s) | 977, 1155 |
| BbsI | GAAGAC | 2 cut(s) | 504, 1159 |
| Bbv12I | GWGCWC | 3 cut(s) | 875, 977, 1155 |
| BbvI | GCAGC | 3 cut(s) | 105, 514, 799 |
| BccI | CCATC | 2 cut(s) | 210, 599 |
| BciT130I | CCWGG | 2 cut(s) | 46, 935 |
| BclI | TGATCA | 1 cut(s) | 1065 |
| BcnI | CCSGG | 2 cut(s) | 445, 882 |
| BcoDI | GTCTC | 4 cut(s) | 316, 525, 770, 995 |
| BfaI | CTAG | 1 cut(s) | 387 |
| BfmI | CTRYAG | 1 cut(s) | 591 |
| BfuAI | ACCTGC | 1 cut(s) | 184 |
| BglII | AGATCT | 1 cut(s) | 1105 |
| BisI | GCNGC | 3 cut(s) | 94, 503, 788 |
| BlsI | GCNGC | 3 cut(s) | 95, 504, 789 |
| Bme1390I | CCNGG | 4 cut(s) | 46, 445, 882, 935 |
| Bme18I | GGWCC | 2 cut(s) | 278, 474 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1201 |
| BmgBI | CACGTC | 1 cut(s) | 655 |
| BmgT120I | GGNCC | 4 cut(s) | 278, 453, 474, 937 |
| BmrFI | CCNGG | 4 cut(s) | 46, 445, 882, 935 |
| BmsI | GCATC | 2 cut(s) | 847, 1097 |
| BpiI | GAAGAC | 2 cut(s) | 504, 1159 |
| BpmI | CTGGAG | 2 cut(s) | 337, 515 |
| BpuEI | CTTGAG | 2 cut(s) | 560, 722 |
| BpuMI | CCSGG | 2 cut(s) | 445, 882 |
| BsaHI | GRCGYC | 1 cut(s) | 949 |
| BsaI | GGTCTC | 1 cut(s) | 770 |
| BsaJI | CCNNGG | 2 cut(s) | 710, 780 |
| BsaWI | WCCGGW | 2 cut(s) | 87, 921 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 117, 147 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 45, 450 |
| Bse1I | ACTGG | 2 cut(s) | 498, 1201 |
| BseBI | CCWGG | 2 cut(s) | 46, 935 |
| BseDI | CCNNGG | 2 cut(s) | 710, 780 |
| BseGI | GGATG | 2 cut(s) | 103, 1197 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 45, 450 |
| BseMII | CTCAG | 1 cut(s) | 660 |
| BseNI | ACTGG | 2 cut(s) | 498, 1201 |
| BseRI | GAGGAG | 4 cut(s) | 388, 421, 512, 1000 |
| BseXI | GCAGC | 3 cut(s) | 105, 514, 799 |
| BseYI | CCCAGC | 1 cut(s) | 178 |
| BshFI | GGCC | 2 cut(s) | 455, 938 |
| BsiHKAI | GWGCWC | 3 cut(s) | 875, 977, 1155 |
| BsiSI | CCGG | 5 cut(s) | 88, 444, 881, 922, 952 |
| BslFI | GGGAC | 1 cut(s) | 960 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 45, 450 |
| BsmAI | GTCTC | 4 cut(s) | 316, 525, 770, 995 |
| BsmBI | CGTCTC | 1 cut(s) | 525 |
| BsmFI | GGGAC | 1 cut(s) | 960 |
| BsmI | GAATGC | 1 cut(s) | 1138 |
| BsnI | GGCC | 2 cut(s) | 455, 938 |
| Bso31I | GGTCTC | 1 cut(s) | 770 |
| Bsp1286I | GDGCHC | 3 cut(s) | 875, 977, 1155 |
| Bsp143I | GATC | 5 cut(s) | 818, 1027, 1065, 1105, 1186 |
| BspACI | CCGC | 2 cut(s) | 131, 982 |
| BspANI | GGCC | 2 cut(s) | 455, 938 |
| BspCNI | CTCAG | 1 cut(s) | 661 |
| BspHI | TCATGA | 1 cut(s) | 331 |
| BspMI | ACCTGC | 1 cut(s) | 184 |
| BspPI | GGATC | 2 cut(s) | 826, 1022 |
| BspTNI | GGTCTC | 1 cut(s) | 770 |
| BsrBI | CCGCTC | 1 cut(s) | 133 |
| BsrI | ACTGG | 2 cut(s) | 498, 1201 |
| BssECI | CCNNGG | 2 cut(s) | 710, 780 |
| BssMI | GATC | 5 cut(s) | 818, 1027, 1065, 1105, 1186 |
| BssNI | GRCGYC | 1 cut(s) | 949 |
| BssT1I | CCWWGG | 1 cut(s) | 780 |
| Bst2UI | CCWGG | 2 cut(s) | 46, 935 |
| Bst4CI | ACNGT | 1 cut(s) | 581 |
| Bst6I | CTCTTC | 2 cut(s) | 365, 853 |
| BstACI | GRCGYC | 1 cut(s) | 949 |
| BstC8I | GCNNGC | 1 cut(s) | 414 |
| BstDEI | CTNAG | 1 cut(s) | 669 |
| BstEII | GGTNACC | 1 cut(s) | 196 |
| BstF5I | GGATG | 2 cut(s) | 103, 1197 |
| BstKTI | GATC | 5 cut(s) | 821, 1030, 1068, 1108, 1189 |
| BstMAI | GTCTC | 4 cut(s) | 316, 525, 770, 995 |
| BstMBI | GATC | 5 cut(s) | 818, 1027, 1065, 1105, 1186 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 334 |
| BstNI | CCWGG | 2 cut(s) | 46, 935 |
| BstNSI | RCATGY | 1 cut(s) | 1119 |
| BstPI | GGTNACC | 1 cut(s) | 196 |
| BstSCI | CCNGG | 4 cut(s) | 44, 443, 880, 933 |
| BstSFI | CTRYAG | 1 cut(s) | 591 |
| BstV1I | GCAGC | 3 cut(s) | 105, 514, 799 |
| BstV2I | GAAGAC | 2 cut(s) | 504, 1159 |
| BstX2I | RGATCY | 1 cut(s) | 1105 |
| BstYI | RGATCY | 1 cut(s) | 1105 |
| BsuRI | GGCC | 2 cut(s) | 455, 938 |
| BtgZI | GCGATG | 1 cut(s) | 533 |
| BtrI | CACGTC | 1 cut(s) | 655 |
| BtsCI | GGATG | 2 cut(s) | 103, 1197 |
| BtsIMutI | CAGTG | 3 cut(s) | 491, 738, 1191 |
| BveI | ACCTGC | 1 cut(s) | 184 |
| Cac8I | GCNNGC | 1 cut(s) | 414 |
| CciI | TCATGA | 1 cut(s) | 331 |
| Cfr13I | GGNCC | 4 cut(s) | 278, 453, 474, 937 |
| CseI | GACGC | 1 cut(s) | 957 |
| Csp6I | GTAC | 3 cut(s) | 10, 235, 843 |
| CviAII | CATG | 8 cut(s) | 67, 332, 418, 554, 815, 1069, 1116, 1148 |
| CviQI | GTAC | 3 cut(s) | 10, 235, 843 |
| DdeI | CTNAG | 1 cut(s) | 669 |
| DpnI | GATC | 5 cut(s) | 820, 1029, 1067, 1107, 1188 |
| DpnII | GATC | 5 cut(s) | 818, 1027, 1065, 1105, 1186 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 954 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1201 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 954 |
| Eam1104I | CTCTTC | 2 cut(s) | 365, 853 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1201 |
| EarI | CTCTTC | 2 cut(s) | 365, 853 |
| Ecl136II | GAGCTC | 2 cut(s) | 975, 1153 |
| Eco130I | CCWWGG | 1 cut(s) | 780 |
| Eco24I | GRGCYC | 2 cut(s) | 977, 1155 |
| Eco31I | GGTCTC | 1 cut(s) | 770 |
| Eco47I | GGWCC | 2 cut(s) | 278, 474 |
| Eco53kI | GAGCTC | 2 cut(s) | 975, 1153 |
| Eco57I | CTGAAG | 1 cut(s) | 132 |
| Eco91I | GGTNACC | 1 cut(s) | 196 |
| EcoICRI | GAGCTC | 2 cut(s) | 975, 1153 |
| EcoO65I | GGTNACC | 1 cut(s) | 196 |
| EcoRI | GAATTC | 1 cut(s) | 566 |
| EcoRII | CCWGG | 2 cut(s) | 44, 933 |
| EcoT14I | CCWWGG | 1 cut(s) | 780 |
| EcoT38I | GRGCYC | 2 cut(s) | 977, 1155 |
| ErhI | CCWWGG | 1 cut(s) | 780 |
| Esp3I | CGTCTC | 1 cut(s) | 525 |
| FaeI | CATG | 8 cut(s) | 70, 335, 421, 557, 818, 1072, 1119, 1151 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 850, 882, 1095, 1127 |
| FaqI | GGGAC | 1 cut(s) | 960 |
| FatI | CATG | 8 cut(s) | 66, 331, 417, 553, 814, 1068, 1115, 1147 |
| FbaI | TGATCA | 1 cut(s) | 1065 |
| FblI | GTMKAC | 1 cut(s) | 422 |
| Fnu4HI | GCNGC | 3 cut(s) | 94, 503, 788 |
| FokI | GGATG | 2 cut(s) | 90, 1184 |
| FriOI | GRGCYC | 2 cut(s) | 977, 1155 |
| Fsp4HI | GCNGC | 3 cut(s) | 94, 503, 788 |
| FspBI | CTAG | 1 cut(s) | 387 |
| GluI | GCNGC | 3 cut(s) | 94, 503, 788 |
| GsaI | CCCAGC | 1 cut(s) | 182 |
| GsuI | CTGGAG | 2 cut(s) | 337, 515 |
| HaeIII | GGCC | 2 cut(s) | 455, 938 |
| HapII | CCGG | 5 cut(s) | 88, 444, 881, 922, 952 |
| HgaI | GACGC | 1 cut(s) | 957 |
| Hin1I | GRCGYC | 1 cut(s) | 949 |
| Hin1II | CATG | 8 cut(s) | 70, 335, 421, 557, 818, 1072, 1119, 1151 |
| HincII | GTYRAC | 1 cut(s) | 423 |
| HindII | GTYRAC | 1 cut(s) | 423 |
| HindIII | AAGCTT | 2 cut(s) | 733, 890 |
| HinfI | GANTC | 7 cut(s) | 373, 404, 464, 485, 955, 988, 1049 |
| HpaII | CCGG | 5 cut(s) | 88, 444, 881, 922, 952 |
| HphI | GGTGA | 5 cut(s) | 197, 208, 281, 760, 870 |
| Hpy166II | GTNNAC | 1 cut(s) | 423 |
| Hpy188III | TCNNGA | 8 cut(s) | 225, 332, 354, 472, 524, 563, 760, 801 |
| Hpy8I | GTNNAC | 1 cut(s) | 423 |
| Hpy99I | CGWCG | 1 cut(s) | 656 |
| HpyAV | CCTTC | 1 cut(s) | 670 |
| HpyCH4III | ACNGT | 1 cut(s) | 581 |
| HpyCH4IV | ACGT | 1 cut(s) | 654 |
| HpyCH4V | TGCA | 6 cut(s) | 288, 383, 917, 1007, 1115, 1136 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 334 |
| HpyF3I | CTNAG | 1 cut(s) | 669 |
| HpySE526I | ACGT | 1 cut(s) | 654 |
| Hsp92I | GRCGYC | 1 cut(s) | 949 |
| Hsp92II | CATG | 8 cut(s) | 70, 335, 421, 557, 818, 1072, 1119, 1151 |
| Ksp22I | TGATCA | 1 cut(s) | 1065 |
| Kzo9I | GATC | 5 cut(s) | 818, 1027, 1065, 1105, 1186 |
| LmnI | GCTCC | 6 cut(s) | 90, 138, 250, 499, 536, 784 |
| Lsp1109I | GCAGC | 3 cut(s) | 105, 514, 799 |
| LweI | GCATC | 2 cut(s) | 847, 1097 |
| MaeI | CTAG | 1 cut(s) | 387 |
| MaeII | ACGT | 1 cut(s) | 654 |
| MaeIII | GTNAC | 2 cut(s) | 196, 575 |
| MalI | GATC | 5 cut(s) | 820, 1029, 1067, 1107, 1188 |
| MbiI | CCGCTC | 1 cut(s) | 133 |
| MboI | GATC | 5 cut(s) | 818, 1027, 1065, 1105, 1186 |
| MfeI | CAATTG | 1 cut(s) | 1008 |
| MflI | RGATCY | 1 cut(s) | 1105 |
| MhlI | GDGCHC | 3 cut(s) | 875, 977, 1155 |
| MluCI | AATT | 9 cut(s) | 97, 322, 378, 566, 680, 912, 927, 967, 1008 |
| MlyI | GAGTC | 3 cut(s) | 382, 964, 997 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1107 |
| MseI | TTAA | 4 cut(s) | 23, 888, 900, 930 |
| MslI | CAYNNNNRTG | 3 cut(s) | 552, 653, 743 |
| MspI | CCGG | 5 cut(s) | 88, 444, 881, 922, 952 |
| MspR9I | CCNGG | 4 cut(s) | 46, 445, 882, 935 |
| MunI | CAATTG | 1 cut(s) | 1008 |
| Mva1269I | GAATGC | 1 cut(s) | 1138 |
| MvaI | CCWGG | 2 cut(s) | 46, 935 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 334 |
| NciI | CCSGG | 2 cut(s) | 445, 882 |
| NdeII | GATC | 5 cut(s) | 818, 1027, 1065, 1105, 1186 |
| NlaIII | CATG | 8 cut(s) | 70, 335, 421, 557, 818, 1072, 1119, 1151 |
| NmuCI | GTSAC | 2 cut(s) | 196, 575 |
| NspI | RCATGY | 1 cut(s) | 1119 |
| PagI | TCATGA | 1 cut(s) | 331 |
| PaqCI | CACCTGC | 1 cut(s) | 184 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 968 |
| PctI | GAATGC | 1 cut(s) | 1138 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1107 |
| PfeI | GAWTC | 4 cut(s) | 404, 464, 485, 1049 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 45 |
| PkrI | GCNGC | 3 cut(s) | 95, 504, 789 |
| PleI | GAGTC | 3 cut(s) | 381, 963, 996 |
| PpsI | GAGTC | 3 cut(s) | 381, 963, 996 |
| PsiI | TTATAA | 1 cut(s) | 719 |
| Psp124BI | GAGCTC | 2 cut(s) | 977, 1155 |
| Psp6I | CCWGG | 2 cut(s) | 44, 933 |
| PspEI | GGTNACC | 1 cut(s) | 196 |
| PspFI | CCCAGC | 1 cut(s) | 178 |
| PspGI | CCWGG | 2 cut(s) | 44, 933 |
| PspPI | GGNCC | 4 cut(s) | 278, 453, 474, 937 |
| PsuI | RGATCY | 1 cut(s) | 1105 |
| RsaI | GTAC | 3 cut(s) | 11, 236, 844 |
| RsaNI | GTAC | 3 cut(s) | 10, 235, 843 |
| RseI | CAYNNNNRTG | 3 cut(s) | 552, 653, 743 |
| SacI | GAGCTC | 2 cut(s) | 977, 1155 |
| SalI | GTCGAC | 1 cut(s) | 421 |
| SaqAI | TTAA | 4 cut(s) | 23, 888, 900, 930 |
| SatI | GCNGC | 3 cut(s) | 94, 503, 788 |
| Sau3AI | GATC | 5 cut(s) | 818, 1027, 1065, 1105, 1186 |
| Sau96I | GGNCC | 4 cut(s) | 278, 453, 474, 937 |
| SchI | GAGTC | 3 cut(s) | 382, 964, 997 |
| ScrFI | CCNGG | 4 cut(s) | 46, 445, 882, 935 |
| SduI | GDGCHC | 3 cut(s) | 875, 977, 1155 |
| SfaNI | GCATC | 2 cut(s) | 847, 1097 |
| SfcI | CTRYAG | 1 cut(s) | 591 |
| SinI | GGWCC | 2 cut(s) | 278, 474 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 552, 653, 743 |
| SmlI | CTYRAG | 2 cut(s) | 539, 701 |
| SmoI | CTYRAG | 2 cut(s) | 539, 701 |
| Sse9I | AATT | 9 cut(s) | 97, 322, 378, 566, 680, 912, 927, 967, 1008 |
| SsiI | CCGC | 2 cut(s) | 131, 982 |
| SspMI | CTAG | 1 cut(s) | 387 |
| SstI | GAGCTC | 2 cut(s) | 977, 1155 |
| StyD4I | CCNGG | 4 cut(s) | 44, 443, 880, 933 |
| StyI | CCWWGG | 1 cut(s) | 780 |
| TaaI | ACNGT | 1 cut(s) | 581 |
| TaiI | ACGT | 1 cut(s) | 657 |
| TaqI | TCGA | 7 cut(s) | 376, 422, 458, 623, 651, 869, 971 |
| TasI | AATT | 9 cut(s) | 97, 322, 378, 566, 680, 912, 927, 967, 1008 |
| TatI | WGTACW | 1 cut(s) | 9 |
| TfiI | GAWTC | 4 cut(s) | 404, 464, 485, 1049 |
| Tru1I | TTAA | 4 cut(s) | 23, 888, 900, 930 |
| Tru9I | TTAA | 4 cut(s) | 23, 888, 900, 930 |
| TscAI | CASTG | 3 cut(s) | 498, 745, 1198 |
| TseFI | GTSAC | 2 cut(s) | 196, 575 |
| TseI | GCWGC | 3 cut(s) | 93, 502, 787 |
| Tsp45I | GTSAC | 2 cut(s) | 196, 575 |
| TspDTI | ATGAA | 3 cut(s) | 536, 648, 1155 |
| TspGWI | ACGGA | 2 cut(s) | 291, 457 |
| TspRI | CASTG | 3 cut(s) | 498, 745, 1198 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 45 |
| VpaK11BI | GGWCC | 2 cut(s) | 278, 474 |
| XapI | RAATTY | 2 cut(s) | 566, 680 |
| XceI | RCATGY | 1 cut(s) | 1119 |
| XmiI | GTMKAC | 1 cut(s) | 422 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1107 |
| XspI | CTAG | 1 cut(s) | 387 |