Rorug03G0101900

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
7972342 .. 7974184
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0101900.1

Sequence Viewer

Length: 1212 bp
ATGGGTAAGTACAAGTTTAGATTAACTGATATGATACCCAATGCCTGGTTTTACAAGCTCAAAGACATGAGCAAACCCAGAAAGAACCGGAGCAGCAATTCTCATCCCAAGAAGAAAAACCAACCACCACCGCTCCCATTTTCTTCTTCAGCAACACCAACACCAACACCAACAAGCCCAGCAAAGCCAAAGCAGGTGACCCATCACCACCATTGTCATCAATCAAGAAAGTCGTACTACTTCACAAGGGAGCTGAATAACTCCACAGGTGAGAACGGACCACTCTGCAACACCCCCATAAACCCAAAAGTCTCTAACACCAATTTGCCTCATGAGCCACCAAGAAAATCCTCCAGACAAAAACAGAGGAAGAGTCGAATTGCAACTAGCAAATCCTCCTCTGATTCCAAGCCTGCCATGTCGACCACCTCCTCTGTTTCTGCCGGGTGTCGGGCCTCGATTGAATCCGTCTGGACCAAATCGGATTCTCCACTGGAGGAGCAGCTCTGGTCTTCTTCGTCTCCCGACAGCTCCGAGCTTGAGTTTCATCGCCATGAGCCTCTTGAATTCCGATGTGACCGTGTTCTTGCTACAGAAACATTTGATGGTATGATTTCTATGTCGAGTTCTAATGAAAAAGACATCATCATCGACGTGGATAACTCATCTGAGAGGAAGGAATTTGATTTGTTCTCCGAGCTTGAGCTTCCTCGGATTATAACCAAGCCCGAAAGCTTCACTGAAATGGTGAGCGAGGTCAAGAAGAAGAAGAAAGAGACCAAGGAGCAGCCAATCAAGTCCAGAAAAAGCTCACATGGATCAGAGAACAATAGAGAGCATCGTACAAGTTCTGTTAGAAGAGTATCTTCGAGCACTTCACCGGGAGTTAAGCTTCGGATTAACTCTCCGAGAATTGCAAACCGGAAAATTAACCAGGCCCAAGTGGGACGCCGGAGTCTGTCGTCTAATTCGAGCTCAAAGCGGAGGAGTCTCTCGGAGAGTTTTGCAATTGTGAAGTCGTCATTTGATCCTCAAAGGGATTTCAGGGAATCAATGATAGAGATGATCATGGAGAACAACATCAAGGCATCAAAGGACTTGGAAGATCTTCTTGCATGTTATCTTTCTCTGAATGCAGATGAATACCATGAGCTCATCATCAAGGTCTTCAAGCAAATCTGGTTTGATCTCACTGACATCCAGTCAAAGTAA

Protein Analysis

403

Amino Acids

45.94

Weight (kDa)

9.69

Isoelectric Point (pI)

61.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_binding_2 PF13724 1 - 41 4.1e-18 DNA-binding domain
Ovate PF04844 341 - 397 8.9e-25 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011828)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 719
AarI CACCTGC 1 cut(s) 184
AasI GACNNNNNNGTC 1 cut(s) 954
Acc36I ACCTGC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 45
AccBSI CCGCTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 422
AciI CCGC 2 cut(s) 131, 982
AclWI GGATC 2 cut(s) 826, 1022
AcsI RAATTY 2 cut(s) 566, 680
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 949
AfaI GTAC 3 cut(s) 11, 236, 844
AfiI CCNNNNNNNGG 2 cut(s) 45, 450
AgsI TTSAA 3 cut(s) 464, 566, 1171
AhdI GACNNNNNGTC 1 cut(s) 1201
AjiI CACGTC 1 cut(s) 655
AjnI CCWGG 2 cut(s) 44, 933
Alw21I GWGCWC 3 cut(s) 875, 977, 1155
Alw26I GTCTC 4 cut(s) 316, 525, 770, 995
AlwI GGATC 2 cut(s) 826, 1022
AoxI GGCC 2 cut(s) 453, 936
ApeKI GCWGC 3 cut(s) 93, 502, 787
ApoI RAATTY 2 cut(s) 566, 680
Asp700I GAANNNNTTC 1 cut(s) 1107
AspS9I GGNCC 4 cut(s) 278, 453, 474, 937
AsuC2I CCSGG 2 cut(s) 445, 882
AsuHPI GGTGA 5 cut(s) 197, 208, 281, 760, 870
AvaII GGWCC 2 cut(s) 278, 474
BanII GRGCYC 2 cut(s) 977, 1155
BbsI GAAGAC 2 cut(s) 504, 1159
Bbv12I GWGCWC 3 cut(s) 875, 977, 1155
BbvI GCAGC 3 cut(s) 105, 514, 799
BccI CCATC 2 cut(s) 210, 599
BciT130I CCWGG 2 cut(s) 46, 935
BclI TGATCA 1 cut(s) 1065
BcnI CCSGG 2 cut(s) 445, 882
BcoDI GTCTC 4 cut(s) 316, 525, 770, 995
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 591
BfuAI ACCTGC 1 cut(s) 184
BglII AGATCT 1 cut(s) 1105
BisI GCNGC 3 cut(s) 94, 503, 788
BlsI GCNGC 3 cut(s) 95, 504, 789
Bme1390I CCNGG 4 cut(s) 46, 445, 882, 935
Bme18I GGWCC 2 cut(s) 278, 474
BmeRI GACNNNNNGTC 1 cut(s) 1201
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 4 cut(s) 278, 453, 474, 937
BmrFI CCNGG 4 cut(s) 46, 445, 882, 935
BmsI GCATC 2 cut(s) 847, 1097
BpiI GAAGAC 2 cut(s) 504, 1159
BpmI CTGGAG 2 cut(s) 337, 515
BpuEI CTTGAG 2 cut(s) 560, 722
BpuMI CCSGG 2 cut(s) 445, 882
BsaHI GRCGYC 1 cut(s) 949
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 2 cut(s) 710, 780
BsaWI WCCGGW 2 cut(s) 87, 921
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 450
Bse1I ACTGG 2 cut(s) 498, 1201
BseBI CCWGG 2 cut(s) 46, 935
BseDI CCNNGG 2 cut(s) 710, 780
BseGI GGATG 2 cut(s) 103, 1197
BseLI CCNNNNNNNGG 2 cut(s) 45, 450
BseMII CTCAG 1 cut(s) 660
BseNI ACTGG 2 cut(s) 498, 1201
BseRI GAGGAG 4 cut(s) 388, 421, 512, 1000
BseXI GCAGC 3 cut(s) 105, 514, 799
BseYI CCCAGC 1 cut(s) 178
BshFI GGCC 2 cut(s) 455, 938
BsiHKAI GWGCWC 3 cut(s) 875, 977, 1155
BsiSI CCGG 5 cut(s) 88, 444, 881, 922, 952
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 2 cut(s) 45, 450
BsmAI GTCTC 4 cut(s) 316, 525, 770, 995
BsmBI CGTCTC 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 960
BsmI GAATGC 1 cut(s) 1138
BsnI GGCC 2 cut(s) 455, 938
Bso31I GGTCTC 1 cut(s) 770
Bsp1286I GDGCHC 3 cut(s) 875, 977, 1155
Bsp143I GATC 5 cut(s) 818, 1027, 1065, 1105, 1186
BspACI CCGC 2 cut(s) 131, 982
BspANI GGCC 2 cut(s) 455, 938
BspCNI CTCAG 1 cut(s) 661
BspHI TCATGA 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 2 cut(s) 826, 1022
BspTNI GGTCTC 1 cut(s) 770
BsrBI CCGCTC 1 cut(s) 133
BsrI ACTGG 2 cut(s) 498, 1201
BssECI CCNNGG 2 cut(s) 710, 780
BssMI GATC 5 cut(s) 818, 1027, 1065, 1105, 1186
BssNI GRCGYC 1 cut(s) 949
BssT1I CCWWGG 1 cut(s) 780
Bst2UI CCWGG 2 cut(s) 46, 935
Bst4CI ACNGT 1 cut(s) 581
Bst6I CTCTTC 2 cut(s) 365, 853
BstACI GRCGYC 1 cut(s) 949
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 669
BstEII GGTNACC 1 cut(s) 196
BstF5I GGATG 2 cut(s) 103, 1197
BstKTI GATC 5 cut(s) 821, 1030, 1068, 1108, 1189
BstMAI GTCTC 4 cut(s) 316, 525, 770, 995
BstMBI GATC 5 cut(s) 818, 1027, 1065, 1105, 1186
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 2 cut(s) 46, 935
BstNSI RCATGY 1 cut(s) 1119
BstPI GGTNACC 1 cut(s) 196
BstSCI CCNGG 4 cut(s) 44, 443, 880, 933
BstSFI CTRYAG 1 cut(s) 591
BstV1I GCAGC 3 cut(s) 105, 514, 799
BstV2I GAAGAC 2 cut(s) 504, 1159
BstX2I RGATCY 1 cut(s) 1105
BstYI RGATCY 1 cut(s) 1105
BsuRI GGCC 2 cut(s) 455, 938
BtgZI GCGATG 1 cut(s) 533
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 2 cut(s) 103, 1197
BtsIMutI CAGTG 3 cut(s) 491, 738, 1191
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 414
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 4 cut(s) 278, 453, 474, 937
CseI GACGC 1 cut(s) 957
Csp6I GTAC 3 cut(s) 10, 235, 843
CviAII CATG 8 cut(s) 67, 332, 418, 554, 815, 1069, 1116, 1148
CviQI GTAC 3 cut(s) 10, 235, 843
DdeI CTNAG 1 cut(s) 669
DpnI GATC 5 cut(s) 820, 1029, 1067, 1107, 1188
DpnII GATC 5 cut(s) 818, 1027, 1065, 1105, 1186
DrdI GACNNNNNNGTC 1 cut(s) 954
DriI GACNNNNNGTC 1 cut(s) 1201
DseDI GACNNNNNNGTC 1 cut(s) 954
Eam1104I CTCTTC 2 cut(s) 365, 853
Eam1105I GACNNNNNGTC 1 cut(s) 1201
EarI CTCTTC 2 cut(s) 365, 853
Ecl136II GAGCTC 2 cut(s) 975, 1153
Eco130I CCWWGG 1 cut(s) 780
Eco24I GRGCYC 2 cut(s) 977, 1155
Eco31I GGTCTC 1 cut(s) 770
Eco47I GGWCC 2 cut(s) 278, 474
Eco53kI GAGCTC 2 cut(s) 975, 1153
Eco57I CTGAAG 1 cut(s) 132
Eco91I GGTNACC 1 cut(s) 196
EcoICRI GAGCTC 2 cut(s) 975, 1153
EcoO65I GGTNACC 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 566
EcoRII CCWGG 2 cut(s) 44, 933
EcoT14I CCWWGG 1 cut(s) 780
EcoT38I GRGCYC 2 cut(s) 977, 1155
ErhI CCWWGG 1 cut(s) 780
Esp3I CGTCTC 1 cut(s) 525
FaeI CATG 8 cut(s) 70, 335, 421, 557, 818, 1072, 1119, 1151
FalI AAGNNNNNCTT 4 cut(s) 850, 882, 1095, 1127
FaqI GGGAC 1 cut(s) 960
FatI CATG 8 cut(s) 66, 331, 417, 553, 814, 1068, 1115, 1147
FbaI TGATCA 1 cut(s) 1065
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 3 cut(s) 94, 503, 788
FokI GGATG 2 cut(s) 90, 1184
FriOI GRGCYC 2 cut(s) 977, 1155
Fsp4HI GCNGC 3 cut(s) 94, 503, 788
FspBI CTAG 1 cut(s) 387
GluI GCNGC 3 cut(s) 94, 503, 788
GsaI CCCAGC 1 cut(s) 182
GsuI CTGGAG 2 cut(s) 337, 515
HaeIII GGCC 2 cut(s) 455, 938
HapII CCGG 5 cut(s) 88, 444, 881, 922, 952
HgaI GACGC 1 cut(s) 957
Hin1I GRCGYC 1 cut(s) 949
Hin1II CATG 8 cut(s) 70, 335, 421, 557, 818, 1072, 1119, 1151
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HindIII AAGCTT 2 cut(s) 733, 890
HinfI GANTC 7 cut(s) 373, 404, 464, 485, 955, 988, 1049
HpaII CCGG 5 cut(s) 88, 444, 881, 922, 952
HphI GGTGA 5 cut(s) 197, 208, 281, 760, 870
Hpy166II GTNNAC 1 cut(s) 423
Hpy188III TCNNGA 8 cut(s) 225, 332, 354, 472, 524, 563, 760, 801
Hpy8I GTNNAC 1 cut(s) 423
Hpy99I CGWCG 1 cut(s) 656
HpyAV CCTTC 1 cut(s) 670
HpyCH4III ACNGT 1 cut(s) 581
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 6 cut(s) 288, 383, 917, 1007, 1115, 1136
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 1 cut(s) 669
HpySE526I ACGT 1 cut(s) 654
Hsp92I GRCGYC 1 cut(s) 949
Hsp92II CATG 8 cut(s) 70, 335, 421, 557, 818, 1072, 1119, 1151
Ksp22I TGATCA 1 cut(s) 1065
Kzo9I GATC 5 cut(s) 818, 1027, 1065, 1105, 1186
LmnI GCTCC 6 cut(s) 90, 138, 250, 499, 536, 784
Lsp1109I GCAGC 3 cut(s) 105, 514, 799
LweI GCATC 2 cut(s) 847, 1097
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 2 cut(s) 196, 575
MalI GATC 5 cut(s) 820, 1029, 1067, 1107, 1188
MbiI CCGCTC 1 cut(s) 133
MboI GATC 5 cut(s) 818, 1027, 1065, 1105, 1186
MfeI CAATTG 1 cut(s) 1008
MflI RGATCY 1 cut(s) 1105
MhlI GDGCHC 3 cut(s) 875, 977, 1155
MluCI AATT 9 cut(s) 97, 322, 378, 566, 680, 912, 927, 967, 1008
MlyI GAGTC 3 cut(s) 382, 964, 997
MroXI GAANNNNTTC 1 cut(s) 1107
MseI TTAA 4 cut(s) 23, 888, 900, 930
MslI CAYNNNNRTG 3 cut(s) 552, 653, 743
MspI CCGG 5 cut(s) 88, 444, 881, 922, 952
MspR9I CCNGG 4 cut(s) 46, 445, 882, 935
MunI CAATTG 1 cut(s) 1008
Mva1269I GAATGC 1 cut(s) 1138
MvaI CCWGG 2 cut(s) 46, 935
MwoI GCNNNNNNNGC 1 cut(s) 334
NciI CCSGG 2 cut(s) 445, 882
NdeII GATC 5 cut(s) 818, 1027, 1065, 1105, 1186
NlaIII CATG 8 cut(s) 70, 335, 421, 557, 818, 1072, 1119, 1151
NmuCI GTSAC 2 cut(s) 196, 575
NspI RCATGY 1 cut(s) 1119
PagI TCATGA 1 cut(s) 331
PaqCI CACCTGC 1 cut(s) 184
PcsI WCGNNNNNNNCGW 1 cut(s) 968
PctI GAATGC 1 cut(s) 1138
PdmI GAANNNNTTC 1 cut(s) 1107
PfeI GAWTC 4 cut(s) 404, 464, 485, 1049
PflMI CCANNNNNTGG 1 cut(s) 45
PkrI GCNGC 3 cut(s) 95, 504, 789
PleI GAGTC 3 cut(s) 381, 963, 996
PpsI GAGTC 3 cut(s) 381, 963, 996
PsiI TTATAA 1 cut(s) 719
Psp124BI GAGCTC 2 cut(s) 977, 1155
Psp6I CCWGG 2 cut(s) 44, 933
PspEI GGTNACC 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 178
PspGI CCWGG 2 cut(s) 44, 933
PspPI GGNCC 4 cut(s) 278, 453, 474, 937
PsuI RGATCY 1 cut(s) 1105
RsaI GTAC 3 cut(s) 11, 236, 844
RsaNI GTAC 3 cut(s) 10, 235, 843
RseI CAYNNNNRTG 3 cut(s) 552, 653, 743
SacI GAGCTC 2 cut(s) 977, 1155
SalI GTCGAC 1 cut(s) 421
SaqAI TTAA 4 cut(s) 23, 888, 900, 930
SatI GCNGC 3 cut(s) 94, 503, 788
Sau3AI GATC 5 cut(s) 818, 1027, 1065, 1105, 1186
Sau96I GGNCC 4 cut(s) 278, 453, 474, 937
SchI GAGTC 3 cut(s) 382, 964, 997
ScrFI CCNGG 4 cut(s) 46, 445, 882, 935
SduI GDGCHC 3 cut(s) 875, 977, 1155
SfaNI GCATC 2 cut(s) 847, 1097
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 2 cut(s) 278, 474
SmiMI CAYNNNNRTG 3 cut(s) 552, 653, 743
SmlI CTYRAG 2 cut(s) 539, 701
SmoI CTYRAG 2 cut(s) 539, 701
Sse9I AATT 9 cut(s) 97, 322, 378, 566, 680, 912, 927, 967, 1008
SsiI CCGC 2 cut(s) 131, 982
SspMI CTAG 1 cut(s) 387
SstI GAGCTC 2 cut(s) 977, 1155
StyD4I CCNGG 4 cut(s) 44, 443, 880, 933
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 1 cut(s) 581
TaiI ACGT 1 cut(s) 657
TaqI TCGA 7 cut(s) 376, 422, 458, 623, 651, 869, 971
TasI AATT 9 cut(s) 97, 322, 378, 566, 680, 912, 927, 967, 1008
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 4 cut(s) 404, 464, 485, 1049
Tru1I TTAA 4 cut(s) 23, 888, 900, 930
Tru9I TTAA 4 cut(s) 23, 888, 900, 930
TscAI CASTG 3 cut(s) 498, 745, 1198
TseFI GTSAC 2 cut(s) 196, 575
TseI GCWGC 3 cut(s) 93, 502, 787
Tsp45I GTSAC 2 cut(s) 196, 575
TspDTI ATGAA 3 cut(s) 536, 648, 1155
TspGWI ACGGA 2 cut(s) 291, 457
TspRI CASTG 3 cut(s) 498, 745, 1198
Van91I CCANNNNNTGG 1 cut(s) 45
VpaK11BI GGWCC 2 cut(s) 278, 474
XapI RAATTY 2 cut(s) 566, 680
XceI RCATGY 1 cut(s) 1119
XmiI GTMKAC 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 1107
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.