Prupe.6G237500_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
23773327 .. 23777370
4044 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G237500.2

Sequence Viewer

Length: 1098 bp
ATGGGAAACAGCGGCAGCAGAAGCAACGGCGCCCGCCGGCGACATGGGGCCCGCCAAAACCATCCGTCTCCGCCGCCTCCCGCGCCACCTCAGCCCGAAATCTCTCCAAACCGATACGTATTCGCCGCGGCTACCCCGTATCCGACTCAGTACCAGAACCATAATCCGAACCCGAACCCGAACCCGCCACAGTACTACCCGGGCTACTACCCGCCGCCGCCTATGCCGATGCCTTTGCCTGCTCCGTACGATCATCACCACCGTGTGCCCCACCCGCATATGGACCCGGCCCATCCAAATTGGGCCGGGGGCCGGTACCGGTGCGGTCCTGTAATGCAGGCTCCGACGCCGTATGTCGAGCATCAGAAGGCGGTTACTATAAGGAACGATGTGAATCTGAAGAAGGAATCTCTCAAGGTCGAGCCCGATGAGGAAAACCCTGGAAGCGTCCTTGTCTCTTTTACTTTTGATGCCACGGTTGCTGGGAGCATCACCATTATCTTCTTTGCGAAAGAAAGTGAGGACTGTAACCTGACACCAACAAAGTCTAACCTTCCACCTGTGACGGTACATTTTCAACAAGGTCTCGGCCAGAAGTTCAGACAGCCCTCTGGAACTGGAATTAATTTCTCAATGTTTGAGGAGACAGAATTACTGAAAGTAACGGACTTGGATATCTATCCCATAGCTGTAAAGGCAGAGGCATCCTCACCTAACCAGGATGGGTCAGAGGGAAACCCTGTATCTGTGACAACGAACTCCCAGATAACTCAGGCCATATTTGAGAGGGAGAAAGGTGAATTCCAGGTGAGGGTTGTCAAGCAGATTCTTTGGGTGAATGGGATGAGGTATGAACTACAGGAGATATATGGCATTGGTAATTCAGTTGAGGGTGACTTGGACGGGAATGACCCAGGAAAAGAATGTGTCATTTGCCTGTCTGAACCACGGGACACAACTGTTCTTCCATGCAGACACATGTGCATGTGCAGTGGGTGTGCCAAGGTTTTGAGATTCCAGACAAACCGTTGCCCAATTTGCCGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTCAACAATGGTCTGGAGGAATGA

Protein Analysis

366

Amino Acids

40.6

Weight (kDa)

6.32

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011828)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 2 cut(s) 29, 315
AccII CGCG 2 cut(s) 83, 128
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 1 cut(s) 800
AcuI CTGAAG 1 cut(s) 419
AcyI GRCGYC 2 cut(s) 30, 347
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 5 cut(s) 152, 194, 248, 317, 570
AfiI CCNNNNNNNGG 3 cut(s) 280, 312, 811
AflIII ACRYGT 1 cut(s) 978
AgeI ACCGGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 578
AjnI CCWGG 4 cut(s) 439, 717, 804, 913
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 1 cut(s) 689
AluI AGCT 1 cut(s) 689
Alw26I GTCTC 4 cut(s) 72, 460, 590, 638
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 6 cut(s) 48, 288, 303, 310, 589, 774
ApaI GGGCCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 1 cut(s) 800
AseI ATTAAT 1 cut(s) 624
AsiGI ACCGGT 1 cut(s) 318
Asp718I GGTACC 1 cut(s) 315
AspLEI GCGC 2 cut(s) 32, 85
AspS9I GGNCC 7 cut(s) 48, 49, 283, 289, 303, 310, 326
AsuC2I CCSGG 4 cut(s) 200, 201, 287, 307
AsuHPI GGTGA 7 cut(s) 248, 484, 702, 809, 820, 847, 905
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 2 cut(s) 283, 326
BaeGI GKGCMC 2 cut(s) 52, 270
BanI GGYRCC 2 cut(s) 29, 315
BanII GRGCYC 2 cut(s) 52, 426
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 27
BccI CCATC 3 cut(s) 69, 300, 716
BceAI ACGGC 2 cut(s) 43, 334
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 4 cut(s) 441, 719, 806, 915
BciVI GTATCC 1 cut(s) 150
BcnI CCSGG 4 cut(s) 200, 201, 287, 307
BcoDI GTCTC 4 cut(s) 72, 460, 590, 638
BfmI CTRYAG 1 cut(s) 857
BfoI RGCGCY 1 cut(s) 33
BfuI GTATCC 1 cut(s) 150
BisI GCNGC 7 cut(s) 13, 16, 74, 126, 129, 215, 218
BlsI GCNGC 7 cut(s) 14, 17, 75, 127, 130, 216, 219
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 8 cut(s) 200, 201, 287, 307, 441, 719, 806, 915
Bme18I GGWCC 2 cut(s) 283, 326
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 7 cut(s) 48, 49, 283, 289, 303, 310, 326
BmiI GGNNCC 7 cut(s) 31, 49, 50, 285, 311, 317, 342
BmrFI CCNGG 8 cut(s) 200, 201, 287, 307, 441, 719, 806, 915
BmsI GCATC 5 cut(s) 219, 370, 460, 498, 713
BplI GAGNNNNNCTC 2 cut(s) 692, 724
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 398
BpuMI CCSGG 4 cut(s) 200, 201, 287, 307
BsaAI YACGTR 1 cut(s) 118
BsaBI GATNNNNATC 2 cut(s) 393, 678
BsaHI GRCGYC 2 cut(s) 30, 347
BsaI GGTCTC 1 cut(s) 590
BsaJI CCNNGG 8 cut(s) 126, 199, 306, 439, 474, 913, 947, 1002
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 312, 811
Bse118I RCCGGY 3 cut(s) 36, 312, 318
Bse1I ACTGG 2 cut(s) 622, 1049
Bse8I GATNNNNATC 2 cut(s) 393, 678
BseBI CCWGG 4 cut(s) 441, 719, 806, 915
BseDI CCNNGG 8 cut(s) 126, 199, 306, 439, 474, 913, 947, 1002
BseGI GGATG 5 cut(s) 61, 292, 704, 727, 849
BseJI GATNNNNATC 2 cut(s) 393, 678
BseLI CCNNNNNNNGG 3 cut(s) 280, 312, 811
BseMII CTCAG 3 cut(s) 104, 161, 785
BseNI ACTGG 2 cut(s) 622, 1049
BseRI GAGGAG 1 cut(s) 656
BseSI GKGCMC 2 cut(s) 52, 270
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 482
BsgI GTGCAG 1 cut(s) 1009
Bsh1236I CGCG 2 cut(s) 83, 128
BshFI GGCC 6 cut(s) 50, 290, 305, 312, 591, 776
BshNI GGYRCC 2 cut(s) 29, 315
BshTI ACCGGT 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 6 cut(s) 37, 200, 287, 306, 313, 319
BsiWI CGTACG 1 cut(s) 246
BslFI GGGAC 1 cut(s) 965
BslI CCNNNNNNNGG 3 cut(s) 280, 312, 811
BsmAI GTCTC 4 cut(s) 72, 460, 590, 638
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 965
BsnI GGCC 6 cut(s) 50, 290, 305, 312, 591, 776
Bso31I GGTCTC 1 cut(s) 590
BsoBI CYCGRG 1 cut(s) 199
Bsp120I GGGCCC 1 cut(s) 48
Bsp1286I GDGCHC 3 cut(s) 52, 270, 426
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 6 cut(s) 50, 290, 305, 312, 591, 776
BspCNI CTCAG 3 cut(s) 103, 160, 784
BspFNI CGCG 2 cut(s) 83, 128
BspLI GGNNCC 7 cut(s) 31, 49, 50, 285, 311, 317, 342
BspT107I GGYRCC 2 cut(s) 29, 315
BspTNI GGTCTC 1 cut(s) 590
BsrFI RCCGGY 3 cut(s) 36, 312, 318
BsrI ACTGG 2 cut(s) 622, 1049
BssAI RCCGGY 3 cut(s) 36, 312, 318
BssECI CCNNGG 8 cut(s) 126, 199, 306, 439, 474, 913, 947, 1002
BssMI GATC 1 cut(s) 250
BssNI GRCGYC 2 cut(s) 30, 347
BssT1I CCWWGG 1 cut(s) 1002
Bst2UI CCWGG 4 cut(s) 441, 719, 806, 915
Bst4CI ACNGT 7 cut(s) 192, 263, 478, 527, 568, 961, 1028
BstACI GRCGYC 2 cut(s) 30, 347
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 5 cut(s) 34, 38, 52, 240, 339
BstDEI CTNAG 3 cut(s) 90, 147, 771
BstDSI CCRYGG 3 cut(s) 126, 474, 947
BstF5I GGATG 5 cut(s) 61, 292, 704, 727, 849
BstFNI CGCG 2 cut(s) 83, 128
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 2 cut(s) 32, 85
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 4 cut(s) 72, 460, 590, 638
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 8 cut(s) 21, 82, 91, 223, 274, 479, 695, 1038
BstNI CCWGG 4 cut(s) 441, 719, 806, 915
BstNSI RCATGY 2 cut(s) 982, 988
BstSCI CCNGG 8 cut(s) 198, 199, 285, 305, 439, 717, 804, 913
BstSFI CTRYAG 1 cut(s) 857
BstSLI GKGCMC 2 cut(s) 52, 270
BstSNI TACGTA 1 cut(s) 118
BstUI CGCG 2 cut(s) 83, 128
BstV1I GCAGC 1 cut(s) 27
BsuI GTATCC 1 cut(s) 150
BsuRI GGCC 6 cut(s) 50, 290, 305, 312, 591, 776
BtgI CCRYGG 3 cut(s) 126, 474, 947
BtsCI GGATG 5 cut(s) 61, 292, 704, 727, 849
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 1 cut(s) 997
Cac8I GCNNGC 5 cut(s) 34, 38, 52, 240, 339
CfoI GCGC 2 cut(s) 32, 85
Cfr10I RCCGGY 3 cut(s) 36, 312, 318
Cfr13I GGNCC 7 cut(s) 48, 49, 283, 289, 303, 310, 326
Cfr42I CCGCGG 1 cut(s) 129
Cfr9I CCCGGG 1 cut(s) 199
CseI GACGC 2 cut(s) 355, 436
Csp6I GTAC 5 cut(s) 151, 193, 247, 316, 569
CspAI ACCGGT 1 cut(s) 318
CviAII CATG 4 cut(s) 44, 969, 979, 985
CviQI GTAC 5 cut(s) 151, 193, 247, 316, 569
DdeI CTNAG 3 cut(s) 90, 147, 771
DinI GGCGCC 1 cut(s) 31
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
DraIII CACNNNGTG 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 589
EciI GGCGGA 1 cut(s) 60
Eco105I TACGTA 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 1002
Eco24I GRGCYC 2 cut(s) 52, 426
Eco31I GGTCTC 1 cut(s) 590
Eco32I GATATC 1 cut(s) 676
Eco47I GGWCC 2 cut(s) 283, 326
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 800
EcoRII CCWGG 4 cut(s) 439, 717, 804, 913
EcoRV GATATC 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 1002
EcoT38I GRGCYC 2 cut(s) 52, 426
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 1002
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 4 cut(s) 47, 972, 982, 988
FaqI GGGAC 1 cut(s) 965
FatI CATG 4 cut(s) 43, 968, 978, 984
FauI CCCGC 6 cut(s) 41, 59, 88, 192, 219, 282
FauNDI CATATG 1 cut(s) 279
Fnu4HI GCNGC 7 cut(s) 13, 16, 74, 126, 129, 215, 218
FokI GGATG 5 cut(s) 48, 279, 691, 734, 856
FriOI GRGCYC 2 cut(s) 52, 426
Fsp4HI GCNGC 7 cut(s) 13, 16, 74, 126, 129, 215, 218
GlaI GCGC 2 cut(s) 31, 84
GluI GCNGC 7 cut(s) 13, 16, 74, 126, 129, 215, 218
GsaI CCCAGC 1 cut(s) 486
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 6 cut(s) 50, 290, 305, 312, 591, 776
HapII CCGG 6 cut(s) 37, 200, 287, 306, 313, 319
HgaI GACGC 2 cut(s) 355, 436
HhaI GCGC 2 cut(s) 32, 85
Hin1I GRCGYC 2 cut(s) 30, 347
Hin1II CATG 4 cut(s) 47, 972, 982, 988
Hin6I GCGC 2 cut(s) 30, 83
HinP1I GCGC 2 cut(s) 30, 83
HincII GTYRAC 1 cut(s) 1078
HindII GTYRAC 1 cut(s) 1078
HinfI GANTC 5 cut(s) 145, 394, 407, 826, 1014
HpaII CCGG 6 cut(s) 37, 200, 287, 306, 313, 319
HphI GGTGA 7 cut(s) 248, 484, 702, 809, 820, 847, 905
Hpy166II GTNNAC 1 cut(s) 1078
Hpy188I TCNGA 8 cut(s) 144, 168, 345, 366, 399, 602, 730, 943
Hpy188III TCNNGA 3 cut(s) 612, 1018, 1088
Hpy8I GTNNAC 1 cut(s) 1078
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 3 cut(s) 361, 397, 563
HpyCH4III ACNGT 7 cut(s) 192, 263, 478, 527, 568, 961, 1028
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 4 cut(s) 337, 972, 984, 990
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 82, 91, 223, 274, 479, 695, 1038
HpyF3I CTNAG 3 cut(s) 90, 147, 771
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 2 cut(s) 30, 347
Hsp92II CATG 4 cut(s) 47, 972, 982, 988
HspAI GCGC 2 cut(s) 30, 83
KasI GGCGCC 1 cut(s) 29
KpnI GGTACC 1 cut(s) 319
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
KspI CCGCGG 1 cut(s) 129
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 3 cut(s) 247, 346, 486
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 5 cut(s) 219, 370, 460, 498, 713
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 6 cut(s) 373, 527, 562, 661, 748, 893
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 3 cut(s) 412, 493, 956
MhlI GDGCHC 3 cut(s) 52, 270, 426
MluCI AATT 7 cut(s) 298, 621, 625, 650, 800, 880, 1035
Mly113I GGCGCC 1 cut(s) 30
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 167, 368
MreI CGCCGGCG 1 cut(s) 36
MroNI GCCGGC 1 cut(s) 36
MseI TTAA 1 cut(s) 624
MslI CAYNNNNRTG 2 cut(s) 261, 983
MspA1I CMGCKG 2 cut(s) 12, 128
MspI CCGG 6 cut(s) 37, 200, 287, 306, 313, 319
MspR9I CCNGG 8 cut(s) 200, 201, 287, 307, 441, 719, 806, 915
MvaI CCWGG 4 cut(s) 441, 719, 806, 915
MvnI CGCG 2 cut(s) 83, 128
MwoI GCNNNNNNNGC 8 cut(s) 21, 82, 91, 223, 274, 479, 695, 1038
NaeI GCCGGC 1 cut(s) 38
NarI GGCGCC 1 cut(s) 30
NciI CCSGG 4 cut(s) 200, 201, 287, 307
NdeI CATATG 1 cut(s) 279
NdeII GATC 1 cut(s) 250
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 4 cut(s) 47, 972, 982, 988
NlaIV GGNNCC 7 cut(s) 31, 49, 50, 285, 311, 317, 342
NmeAIII GCCGAG 1 cut(s) 567
NmuCI GTSAC 3 cut(s) 562, 748, 893
NspI RCATGY 2 cut(s) 982, 988
OliI CACNNNNGTG 1 cut(s) 261
PciI ACATGT 1 cut(s) 978
PdiI GCCGGC 1 cut(s) 38
PfeI GAWTC 4 cut(s) 394, 407, 826, 1014
Pfl23II CGTACG 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 318
PkrI GCNGC 7 cut(s) 14, 17, 75, 127, 130, 216, 219
PleI GAGTC 1 cut(s) 139
PluTI GGCGCC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 139
Ppu21I YACGTR 1 cut(s) 118
PscI ACATGT 1 cut(s) 978
PshBI ATTAAT 1 cut(s) 624
Psp6I CCWGG 4 cut(s) 439, 717, 804, 913
PspFI CCCAGC 1 cut(s) 482
PspGI CCWGG 4 cut(s) 439, 717, 804, 913
PspLI CGTACG 1 cut(s) 246
PspN4I GGNNCC 7 cut(s) 31, 49, 50, 285, 311, 317, 342
PspOMI GGGCCC 1 cut(s) 48
PspPI GGNCC 7 cut(s) 48, 49, 283, 289, 303, 310, 326
RsaI GTAC 5 cut(s) 152, 194, 248, 317, 570
RsaNI GTAC 5 cut(s) 151, 193, 247, 316, 569
RseI CAYNNNNRTG 2 cut(s) 261, 983
SacII CCGCGG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 7 cut(s) 13, 16, 74, 126, 129, 215, 218
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 7 cut(s) 48, 49, 283, 289, 303, 310, 326
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 8 cut(s) 200, 201, 287, 307, 441, 719, 806, 915
SduI GDGCHC 3 cut(s) 52, 270, 426
SfaNI GCATC 5 cut(s) 219, 370, 460, 498, 713
SfcI CTRYAG 1 cut(s) 857
SfoI GGCGCC 1 cut(s) 31
Sfr303I CCGCGG 1 cut(s) 129
SgrAI CRCCGGYG 1 cut(s) 36
SgrBI CCGCGG 1 cut(s) 129
SinI GGWCC 2 cut(s) 283, 326
SmaI CCCGGG 1 cut(s) 201
SmiMI CAYNNNNRTG 2 cut(s) 261, 983
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SnaBI TACGTA 1 cut(s) 118
Sse9I AATT 7 cut(s) 298, 621, 625, 650, 800, 880, 1035
SspDI GGCGCC 1 cut(s) 29
StyD4I CCNGG 8 cut(s) 198, 199, 285, 305, 439, 717, 804, 913
StyI CCWWGG 1 cut(s) 1002
TaaI ACNGT 7 cut(s) 192, 263, 478, 527, 568, 961, 1028
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 357, 420
TasI AATT 7 cut(s) 298, 621, 625, 650, 800, 880, 1035
TatI WGTACW 1 cut(s) 192
TauI GCSGC 6 cut(s) 15, 76, 128, 131, 217, 220
TfiI GAWTC 4 cut(s) 394, 407, 826, 1014
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 1 cut(s) 997
TseFI GTSAC 3 cut(s) 562, 748, 893
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 3 cut(s) 562, 748, 893
TspDTI ATGAA 1 cut(s) 867
TspGWI ACGGA 3 cut(s) 54, 234, 680
TspMI CCCGGG 1 cut(s) 199
TspRI CASTG 1 cut(s) 997
VpaK11BI GGWCC 2 cut(s) 283, 326
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 1 cut(s) 800
XceI RCATGY 2 cut(s) 982, 988
XmaI CCCGGG 1 cut(s) 199
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.