Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008852.1

Orthogroup ID

OG0011828

Physical Location & Seq

Genomic Coordinates Forward (+)

14321 .. 15225

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008852.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atggctctgtggaacagcatcaccatcatcttctttgcaaaggaaggcgaggactgtaacctgacaccaacgaagtttaacctcctcccacctgtgacagtacactttcaacaaggcctgggccagaagttcaaacaaccccctggaactggaattaacttctcaatgtttgacgagacagagttactgaaagtagctggcttggatatctatcctctagcagtgaaggcagaggcatccccacctgagcatgatggatcagagggaaactctgtatctgtagcaacgaactcccagataactcaggctgtatttgagagggagaaaggtgaattccaggtgagggttgtcaagcagatcctttgggtgagtgggatgaggtatgaactacaggagatatatggaattggtaattcagtcgaggatgacttggacgggaacgatccaggaaaagaatgcgtcatttgcctgtctgaaccacgggacacaactgttcttccatgtcggcacatgtgtatgtgcagcgggtgtgccaaggttttgagataccagacaaaccgatgtccaatttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005829 GO:0005886 GO:0006464 GO:0006513 GO:0006807 GO:0006810 GO:0007034 GO:0007041 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008277 GO:0008333 GO:0008589 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016192 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0032446 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043949 GO:0043951 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045744 GO:0045879 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055081 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080144 GO:0097305 GO:0097306 GO:0097708 GO:0140096 GO:1901527 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

191

Amino Acids

21.18

Weight (kDa)

4.99

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09770 AT3G09770
fragaria_vesca	FvH4_6g15750
malus_domestica	MD04G1099100.v1.1 MD12G1119700.v1.1
prunus_persica	Prupe.6G237500_v2.0.a1 Prupe.6G237500_v2.0.a1
pyrus_communis	pycom04g09400
rosa_chinensis	RchiOBHm_Chr3g0469461
rosa_laevigata	RLG00000024348
rosa_multiflora	Rmu_sc0005274.1_g000003 Rmu_sc0008852.1_g000003
rosa_roxburghii	Rroxscaffold_6G00411870
rosa_rugosa	Rorug03G0101900
rosa_samantha	Rh3AG150900 Rh3BG174600 Rh3CG165600 Rh3DG200800
rosa_wichuraiana	Rw3G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	525
AclWI	GGATC	3 cut(s)	265, 352, 437
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	149, 343
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	2 cut(s)	110, 133
AjnI	CCWGG	4 cut(s)	117, 142, 336, 445
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	265, 352, 437
AoxI	GGCC	2 cut(s)	115, 121
ApeKI	GCWGC	1 cut(s)	522
ApoI	RAATTY	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	4 cut(s)	13, 341, 352, 379
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	2 cut(s)	32, 248
BciT130I	CCWGG	4 cut(s)	119, 144, 338, 447
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	2 cut(s)	279, 389
BisI	GCNGC	1 cut(s)	523
BlsI	GCNGC	1 cut(s)	524
Bme1390I	CCNGG	4 cut(s)	119, 144, 338, 447
BmgT120I	GGNCC	1 cut(s)	121
BmrFI	CCNGG	4 cut(s)	119, 144, 338, 447
BmsI	GCATC	2 cut(s)	27, 245
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
Bpu10I	CCTNAGC	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	118, 142, 479, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 343
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	4 cut(s)	119, 144, 338, 447
BseDI	CCNNGG	4 cut(s)	118, 142, 479, 534
BseGI	GGATG	3 cut(s)	236, 381, 430
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	149, 343
BseMII	CTCAG	2 cut(s)	237, 317
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	534
BsgI	GTGCAG	1 cut(s)	541
BshFI	GGCC	2 cut(s)	117, 123
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	149, 343
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	497
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	117, 123
Bsp143I	GATC	3 cut(s)	257, 357, 442
BspACI	CCGC	1 cut(s)	525
BspANI	GGCC	2 cut(s)	117, 123
BspCNI	CTCAG	2 cut(s)	238, 316
BspPI	GGATC	3 cut(s)	265, 352, 437
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	4 cut(s)	118, 142, 479, 534
BssMI	GATC	3 cut(s)	257, 357, 442
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	4 cut(s)	119, 144, 338, 447
Bst4CI	ACNGT	3 cut(s)	56, 100, 493
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	246, 303
BstDSI	CCRYGG	1 cut(s)	479
BstF5I	GGATG	3 cut(s)	236, 381, 430
BstKTI	GATC	3 cut(s)	260, 360, 445
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	3 cut(s)	257, 357, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 465
BstNI	CCWGG	4 cut(s)	119, 144, 338, 447
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	4 cut(s)	117, 142, 336, 445
BstSFI	CTRYAG	2 cut(s)	279, 389
BstV1I	GCAGC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	117, 123
BtgI	CCRYGG	1 cut(s)	479
BtsCI	GGATG	3 cut(s)	236, 381, 430
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	121
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	3 cut(s)	251, 501, 511
CviJI	RGCY	6 cut(s)	5, 117, 123, 197, 201, 308
CviKI_1	RGCY	6 cut(s)	5, 117, 123, 197, 201, 308
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	2 cut(s)	246, 303
DpnI	GATC	3 cut(s)	259, 359, 444
DpnII	GATC	3 cut(s)	257, 357, 442
Eco130I	CCWWGG	1 cut(s)	534
Eco147I	AGGCCT	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	4 cut(s)	117, 142, 336, 445
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	3 cut(s)	254, 504, 514
FaiI	YATR	7 cut(s)	252, 384, 400, 402, 502, 512, 518
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	3 cut(s)	250, 500, 510
FauI	CCCGC	1 cut(s)	518
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	3 cut(s)	223, 388, 437
Fsp4HI	GCNGC	1 cut(s)	523
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	523
HaeIII	GGCC	2 cut(s)	117, 123
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	3 cut(s)	254, 504, 514
HphI	GGTGA	4 cut(s)	13, 341, 352, 379
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	262, 475
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	38, 220
HpyCH4III	ACNGT	3 cut(s)	56, 100, 493
HpyCH4V	TGCA	2 cut(s)	38, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 465
HpyF3I	CTNAG	2 cut(s)	246, 303
Hsp92II	CATG	3 cut(s)	254, 504, 514
Kzo9I	GATC	3 cut(s)	257, 357, 442
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	2 cut(s)	27, 245
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	56, 94, 183
MalI	GATC	3 cut(s)	259, 359, 444
MboI	GATC	3 cut(s)	257, 357, 442
MboII	GAAGA	2 cut(s)	22, 488
MflI	RGATCY	1 cut(s)	357
MluCI	AATT	5 cut(s)	153, 332, 405, 412, 567
MseI	TTAA	2 cut(s)	78, 156
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	525
MspR9I	CCNGG	4 cut(s)	119, 144, 338, 447
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	4 cut(s)	119, 144, 338, 447
MwoI	GCNNNNNNNGC	2 cut(s)	227, 465
NdeII	GATC	3 cut(s)	257, 357, 442
NlaIII	CATG	3 cut(s)	254, 504, 514
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	117
PciI	ACATGT	1 cut(s)	510
PctI	GAATGC	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	445
PkrI	GCNGC	1 cut(s)	524
PscI	ACATGT	1 cut(s)	510
Psp6I	CCWGG	4 cut(s)	117, 142, 336, 445
PspGI	CCWGG	4 cut(s)	117, 142, 336, 445
PspPI	GGNCC	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	78, 156
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	3 cut(s)	257, 357, 442
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	4 cut(s)	119, 144, 338, 447
SetI	ASST	9 cut(s)	63, 84, 94, 199, 247, 331, 342, 383, 540
SfaNI	GCATC	2 cut(s)	27, 245
SfcI	CTRYAG	2 cut(s)	279, 389
SmiMI	CAYNNNNRTG	1 cut(s)	515
Sse9I	AATT	5 cut(s)	153, 332, 405, 412, 567
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	525
SspMI	CTAG	1 cut(s)	218
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	4 cut(s)	117, 142, 336, 445
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	56, 100, 493
TaqI	TCGA	1 cut(s)	420
TasI	AATT	5 cut(s)	153, 332, 405, 412, 567
TatI	WGTACW	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	78, 156
Tru9I	TTAA	2 cut(s)	78, 156
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	522
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	228
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.