Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011828

Physical Location & Seq

Genomic Coordinates Forward (+)

18411655 .. 18414429

Gene Structure 2775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1099100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCAGGCTCCGACGCCATACGTGGAGCACCAGAAGGCAGTAACTATAAGGAACGATGTGAATCTGAAGAAGGAGACTCTGAAGGTCGAGCCCGATGAGGAAAACCCTGGAAGCTTTCTCCTGTCCTTTGCTTTTGATGCCACTGTTGCTGGGAGGTTGAACTGCATCACCATTATCTTCTTTGCGAAAGAAGGCGAGGCCTGTAATCTGACACCAATGAAATTTAACCTTCATCCACCTGTGACAATACATTTTGAACAAGGTCTGGGCCAGAAGTTCAGGCAGCCCCCTGGAACTGGAATTAACTTCTCAATGTTTGAGGATACAGAGTTACTGAAAGTAGCTGAGTTGGATATCTATCCTATAGCTGTGAAGGCTGAGGCATCCCCTCCTGCCCATGATGGATCAGAGGGAAGCCCTTTGTCTGTAACAACAAACTCCCAGATAACTCAAGCTGTATTTGAAAGGGAGAAAGGTGAATTCCAAGTTAGGGTTGCCAAGCAGATTCTTTGGGTGAAGGGGATGAGGTGTGAACTACAGGAGATATATGGCATTGGTAATTCAGTTGAAGGTGACGTGGACGGGAATGACCCAGGGAAAGAATGTGTAATTTGCCTGTCTGAACCACAGGATACAACTGTTCTTCCATGCAGACACATGTGCATGTGCAATGGGTGTGCCAAGGTCTTGAGATTCCAAACAAACCGCTGCCCTATTTGCCGACAACCGGTTGAGAGGCTTTTGGAGATAAAGGTCAACGATGGCCCTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005829 GO:0005886 GO:0006464 GO:0006513 GO:0006807 GO:0006810 GO:0007034 GO:0007041 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008277 GO:0008333 GO:0008589 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016192 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023057 GO:0031410 GO:0031982 GO:0032446 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043949 GO:0043951 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045744 GO:0045879 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055081 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080144 GO:0097305 GO:0097306 GO:0097708 GO:0140096 GO:1901527 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

259

Amino Acids

28.65

Weight (kDa)

5.12

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNF157-like_N	PF26192	20 - 179	2.8e-63	RNF157-like N-terminal domain
zf-C3HC4_3	PF13920	200 - 246	2.3e-16	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	201 - 241	4.8e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09770 AT3G09770
fragaria_vesca	FvH4_6g15750
malus_domestica	MD04G1099100.v1.1 MD12G1119700.v1.1
prunus_persica	Prupe.6G237500_v2.0.a1 Prupe.6G237500_v2.0.a1
pyrus_communis	pycom04g09400
rosa_chinensis	RchiOBHm_Chr3g0469461
rosa_laevigata	RLG00000024348
rosa_multiflora	Rmu_sc0005274.1_g000003 Rmu_sc0008852.1_g000003
rosa_roxburghii	Rroxscaffold_6G00411870
rosa_rugosa	Rorug03G0101900
rosa_samantha	Rh3AG150900 Rh3BG174600 Rh3CG165600 Rh3DG200800
rosa_wichuraiana	Rw3G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	706
AclWI	GGATC	1 cut(s)	412
AcsI	RAATTY	2 cut(s)	221, 479
AcuI	CTGAAG	2 cut(s)	86, 101
AcyI	GRCGYC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	296, 490, 727
AflIII	ACRYGT	1 cut(s)	657
AgeI	ACCGGT	1 cut(s)	727
AgsI	TTSAA	4 cut(s)	160, 257, 464, 569
AjiI	CACGTC	1 cut(s)	577
AjnI	CCWGG	3 cut(s)	106, 289, 592
AluBI	AGCT	4 cut(s)	114, 344, 368, 455
AluI	AGCT	4 cut(s)	114, 344, 368, 455
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	412
AoxI	GGCC	3 cut(s)	198, 268, 763
ApeKI	GCWGC	2 cut(s)	283, 708
ApoI	RAATTY	2 cut(s)	221, 479
AsiGI	ACCGGT	1 cut(s)	727
AspS9I	GGNCC	2 cut(s)	268, 764
AsuHPI	GGTGA	4 cut(s)	160, 488, 526, 584
AxyI	CCTNAGG	1 cut(s)	768
BaeI	ACNNNNGTAYC	2 cut(s)	624, 657
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	295, 695
BccI	CCATC	2 cut(s)	395, 755
BciT130I	CCWGG	3 cut(s)	108, 291, 594
BciVI	GTATCC	2 cut(s)	316, 625
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	2 cut(s)	363, 536
BfuI	GTATCC	2 cut(s)	316, 625
BisI	GCNGC	2 cut(s)	284, 709
BlsI	GCNGC	2 cut(s)	285, 710
Bme1390I	CCNGG	3 cut(s)	108, 291, 594
BmgBI	CACGTC	1 cut(s)	577
BmgT120I	GGNCC	2 cut(s)	268, 764
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	3 cut(s)	108, 291, 594
BmsI	GCATC	3 cut(s)	127, 174, 392
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	435, 709
BsaAI	YACGTR	1 cut(s)	22
BsaBI	GATNNNNATC	2 cut(s)	60, 357
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	5 cut(s)	106, 289, 592, 593, 681
BsaWI	WCCGGW	1 cut(s)	727
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 490, 727
Bse118I	RCCGGY	1 cut(s)	727
Bse1I	ACTGG	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	768
Bse3DI	GCAATG	1 cut(s)	676
Bse8I	GATNNNNATC	2 cut(s)	60, 357
BseBI	CCWGG	3 cut(s)	108, 291, 594
BseDI	CCNNGG	5 cut(s)	106, 289, 592, 593, 681
BseGI	GGATG	3 cut(s)	232, 383, 528
BseJI	GATNNNNATC	2 cut(s)	60, 357
BseLI	CCNNNNNNNGG	3 cut(s)	296, 490, 727
BseMI	GCAATG	1 cut(s)	676
BseMII	CTCAG	3 cut(s)	336, 369, 759
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	295, 695
BseYI	CCCAGC	1 cut(s)	149
BshFI	GGCC	3 cut(s)	200, 270, 765
BshTI	ACCGGT	1 cut(s)	727
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	728
BslI	CCNNNNNNNGG	3 cut(s)	296, 490, 727
BsmAI	GTCTC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	200, 270, 765
Bsp1286I	GDGCHC	2 cut(s)	30, 93
Bsp143I	GATC	1 cut(s)	404
BspACI	CCGC	1 cut(s)	706
BspANI	GGCC	3 cut(s)	200, 270, 765
BspCNI	CTCAG	3 cut(s)	337, 370, 760
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	676
BsrFI	RCCGGY	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	727
BssECI	CCNNGG	5 cut(s)	106, 289, 592, 593, 681
BssMI	GATC	1 cut(s)	404
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	681
Bst2UI	CCWGG	3 cut(s)	108, 291, 594
Bst4CI	ACNGT	2 cut(s)	145, 640
BstACI	GRCGYC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	345, 378, 768
BstF5I	GGATG	3 cut(s)	232, 383, 528
BstKTI	GATC	1 cut(s)	407
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 146, 374, 717
BstNI	CCWGG	3 cut(s)	108, 291, 594
BstNSI	RCATGY	2 cut(s)	661, 667
BstSCI	CCNGG	3 cut(s)	106, 289, 592
BstSFI	CTRYAG	2 cut(s)	363, 536
BstV1I	GCAGC	2 cut(s)	295, 695
Bsu36I	CCTNAGG	1 cut(s)	768
BsuI	GTATCC	2 cut(s)	316, 625
BsuRI	GGCC	3 cut(s)	200, 270, 765
BtrI	CACGTC	1 cut(s)	577
BtsCI	GGATG	3 cut(s)	232, 383, 528
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	268, 764
CseI	GACGC	1 cut(s)	22
CspAI	ACCGGT	1 cut(s)	727
CviAII	CATG	4 cut(s)	398, 648, 658, 664
DdeI	CTNAG	3 cut(s)	345, 378, 768
DpnI	GATC	1 cut(s)	406
DpnII	GATC	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	681
Eco147I	AGGCCT	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	86, 101
Eco81I	CCTNAGG	1 cut(s)	768
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	3 cut(s)	106, 289, 592
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	681
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	4 cut(s)	401, 651, 661, 667
FaiI	YATR	9 cut(s)	19, 47, 365, 399, 547, 549, 649, 659, 665
FatI	CATG	4 cut(s)	397, 647, 657, 663
Fnu4HI	GCNGC	2 cut(s)	284, 709
FokI	GGATG	3 cut(s)	219, 370, 535
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	284, 709
GluI	GCNGC	2 cut(s)	284, 709
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	200, 270, 765
HapII	CCGG	1 cut(s)	728
HgaI	GACGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	4 cut(s)	401, 651, 661, 667
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	4 cut(s)	61, 76, 505, 693
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	4 cut(s)	160, 488, 526, 584
Hpy166II	GTNNAC	3 cut(s)	533, 580, 757
Hpy188I	TCNGA	6 cut(s)	12, 66, 81, 210, 409, 622
Hpy188III	TCNNGA	1 cut(s)	688
Hpy8I	GTNNAC	3 cut(s)	533, 580, 757
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	8 cut(s)	28, 64, 76, 185, 239, 367, 511, 563
HpyCH4III	ACNGT	2 cut(s)	145, 640
HpyCH4IV	ACGT	2 cut(s)	21, 576
HpyCH4V	TGCA	5 cut(s)	4, 165, 651, 663, 669
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 146, 374, 717
HpyF3I	CTNAG	3 cut(s)	345, 378, 768
HpySE526I	ACGT	2 cut(s)	21, 576
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	401, 651, 661, 667
Kzo9I	GATC	1 cut(s)	404
LmnI	GCTCC	2 cut(s)	13, 25
Lsp1109I	GCAGC	2 cut(s)	295, 695
LweI	GCATC	3 cut(s)	127, 174, 392
MaeII	ACGT	2 cut(s)	21, 576
MaeIII	GTNAC	5 cut(s)	40, 241, 330, 427, 572
MalI	GATC	1 cut(s)	406
MboI	GATC	1 cut(s)	404
MboII	GAAGA	3 cut(s)	79, 169, 635
MhlI	GDGCHC	2 cut(s)	30, 93
MluCI	AATT	5 cut(s)	221, 300, 479, 559, 609
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	2 cut(s)	35, 330
MseI	TTAA	2 cut(s)	225, 303
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	708
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	3 cut(s)	108, 291, 594
MvaI	CCWGG	3 cut(s)	108, 291, 594
MwoI	GCNNNNNNNGC	4 cut(s)	137, 146, 374, 717
NdeII	GATC	1 cut(s)	404
NlaIII	CATG	4 cut(s)	401, 651, 661, 667
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	2 cut(s)	241, 572
NspI	RCATGY	2 cut(s)	661, 667
PasI	CCCWGGG	1 cut(s)	593
PceI	AGGCCT	1 cut(s)	200
PciI	ACATGT	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	61, 505, 693
PinAI	ACCGGT	1 cut(s)	727
PkrI	GCNGC	2 cut(s)	285, 710
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	22
PscI	ACATGT	1 cut(s)	657
Psp6I	CCWGG	3 cut(s)	106, 289, 592
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	3 cut(s)	106, 289, 592
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	268, 764
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	2 cut(s)	225, 303
SatI	GCNGC	2 cut(s)	284, 709
Sau3AI	GATC	1 cut(s)	404
Sau96I	GGNCC	2 cut(s)	268, 764
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	3 cut(s)	108, 291, 594
SduI	GDGCHC	2 cut(s)	30, 93
SfaNI	GCATC	3 cut(s)	127, 174, 392
SfcI	CTRYAG	2 cut(s)	363, 536
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	2 cut(s)	450, 688
SmoI	CTYRAG	2 cut(s)	450, 688
Sse9I	AATT	5 cut(s)	221, 300, 479, 559, 609
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	1 cut(s)	706
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	3 cut(s)	106, 289, 592
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	2 cut(s)	145, 640
TaiI	ACGT	2 cut(s)	24, 579
TaqI	TCGA	1 cut(s)	87
TasI	AATT	5 cut(s)	221, 300, 479, 559, 609
TfiI	GAWTC	3 cut(s)	61, 505, 693
Tru1I	TTAA	2 cut(s)	225, 303
Tru9I	TTAA	2 cut(s)	225, 303
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	241, 572
TseI	GCWGC	2 cut(s)	283, 708
Tsp45I	GTSAC	2 cut(s)	241, 572
TspDTI	ATGAA	2 cut(s)	221, 233
TspRI	CASTG	1 cut(s)	148
XapI	RAATTY	2 cut(s)	221, 479
XceI	RCATGY	2 cut(s)	661, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.