Rmu_sc0005274.1_g000003

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005274.1
Physical Location & Seq
Forward (+)
4898 .. 8345
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005274.1_g000003.1.cds

Sequence Viewer

Length: 1341 bp
atgggaaacatgggcagtagtagaggcaactcctcccgccggagacaccaccaaaaccgccagagccacccgtctccgccgccaccggccccaccacagcccgaaatctccgccaatcgctacgtcttcgcggcggcgacgccgtacccggctcagtacccgaaccaaaacccgccgcaatacccgaacccgaaccaggcccaattctcccagaaaaatttaaactttcccaatatgggaaacatgggcagtagtagaggcaactcctcccgccggagacaccaccacaaccgccagagccacccgtctccgccgccaccggccccaccacagcccgaaatctccgccaaccgctacgtcttcgctgccgcgacgccgtacccggctcagtacccgaaccaaaacccgccgcaatacccgaacccgaaccaggcccagtatttccagtacccgggttactacccgccggcgccactgccggcgccgtacgatcaccaccaccgggtgccgcatccgcagatggacccggcccaggcgaattgggccggcgggaggtaccggtgcgggccggtaatgcaggctccgacgccgtacgtggagcaccagaaggcggtgacgataaggaacgatgtgaatctgaagaaggagtctttgagggttgaaccggatgaggaaaaccccgggagctttctgttgtctttcacttttgatgccactgttgctgggagcatcaccatcatcttctttgcaaaggaaggcgaggactgtaacctgacaccaacgaagtttaacctcctcccacctgtgacagtacactttcaacaaggcctgggccagaagttcaaacaaccccctggaactggaattaacttctcaatgtttgacgagacagagttactgaaagtagctggcttggatatctatcctctagcagtgaaggcagaggcatccccacctgagcatgatggatcagagggaaactctgtatctgtaacaacgaactcccagataactcaggctgtatttgagagggagaaaggtgaattccaggtgagggttgtcaagcagatcctttgggtgagtgggatgaggtatgaactacaggagatatatggaattggtaattcagtcgaggatgacttggacgggaacgatccaggaaaagaatgcgtcatttgcctgtctgaaccacgggacacaactgttcttccatgtcggcacatgtgtatgtgcagcgggtgtgccaaggttttgagataccagacaaaccgatgtccaatttgccgacaaccagttgagaggcttttggagataaaggtcaacaatggtcctgaggaatga

Protein Analysis

446

Amino Acids

49.78

Weight (kDa)

7.62

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011828)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 555
AccB1I GGYRCC 4 cut(s) 469, 481, 505, 555
AccII CGCG 2 cut(s) 131, 371
AclWI GGATC 3 cut(s) 976, 1063, 1148
AcsI RAATTY 2 cut(s) 217, 1043
AcuI CTGAAG 1 cut(s) 659
AcyI GRCGYC 5 cut(s) 140, 374, 470, 482, 587
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 9 cut(s) 146, 158, 380, 392, 449, 488, 557, 593, 813
AflIII ACRYGT 1 cut(s) 1221
AgeI ACCGGT 1 cut(s) 558
AgsI TTSAA 3 cut(s) 662, 821, 844
AjnI CCWGG 7 cut(s) 195, 429, 531, 828, 853, 1047, 1156
AluBI AGCT 2 cut(s) 687, 908
AluI AGCT 2 cut(s) 687, 908
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 5 cut(s) 37, 78, 271, 312, 881
AlwI GGATC 3 cut(s) 976, 1063, 1148
Ama87I CYCGRG 2 cut(s) 451, 680
AoxI GGCC 9 cut(s) 87, 198, 321, 432, 528, 543, 566, 826, 832
ApeKI GCWGC 2 cut(s) 365, 1233
ApoI RAATTY 2 cut(s) 217, 1043
AsiGI ACCGGT 1 cut(s) 558
Asp718I GGTACC 1 cut(s) 555
AspLEI GCGC 2 cut(s) 472, 484
AsuC2I CCSGG 8 cut(s) 149, 383, 452, 453, 503, 527, 681, 682
AsuHPI GGTGA 6 cut(s) 485, 625, 724, 1052, 1063, 1090
AvaI CYCGRG 2 cut(s) 451, 680
AvaII GGWCC 2 cut(s) 523, 1328
AxyI CCTNAGG 1 cut(s) 1332
BanI GGYRCC 4 cut(s) 469, 481, 505, 555
BbsI GAAGAC 2 cut(s) 118, 352
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 352, 1245
BccI CCATC 3 cut(s) 514, 743, 959
BceAI ACGGC 4 cut(s) 127, 361, 469, 574
BciT130I CCWGG 7 cut(s) 197, 431, 533, 830, 855, 1049, 1158
BcnI CCSGG 8 cut(s) 149, 383, 452, 453, 503, 527, 681, 682
BcoDI GTCTC 5 cut(s) 37, 78, 271, 312, 881
BfaI CTAG 1 cut(s) 929
BfmI CTRYAG 1 cut(s) 1100
BfoI RGCGCY 2 cut(s) 473, 485
Bme18I GGWCC 2 cut(s) 523, 1328
BmeT110I CYCGRG 2 cut(s) 451, 680
BmiI GGNNCC 8 cut(s) 90, 324, 471, 483, 507, 525, 557, 582
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 4 cut(s) 520, 700, 738, 956
BmuI ACTGGG 1 cut(s) 430
BpiI GAAGAC 2 cut(s) 118, 352
BplI GAGNNNNNCTC 2 cut(s) 965, 997
Bpu10I CCTNAGC 1 cut(s) 957
BpuMI CCSGG 8 cut(s) 149, 383, 452, 453, 503, 527, 681, 682
BsaAI YACGTR 1 cut(s) 595
BsaBI GATNNNNATC 2 cut(s) 633, 921
BsaHI GRCGYC 5 cut(s) 140, 374, 470, 482, 587
BsaJI CCNNGG 8 cut(s) 451, 531, 679, 680, 829, 853, 1190, 1245
BsaWI WCCGGW 2 cut(s) 558, 664
Bse118I RCCGGY 7 cut(s) 85, 319, 466, 478, 545, 558, 568
Bse1I ACTGG 4 cut(s) 436, 445, 865, 1292
Bse21I CCTNAGG 1 cut(s) 1332
Bse8I GATNNNNATC 2 cut(s) 633, 921
BseBI CCWGG 7 cut(s) 197, 431, 533, 830, 855, 1049, 1158
BseDI CCNNGG 8 cut(s) 451, 531, 679, 680, 829, 853, 1190, 1245
BseGI GGATG 5 cut(s) 511, 673, 947, 1092, 1141
BseJI GATNNNNATC 2 cut(s) 633, 921
BseMII CTCAG 5 cut(s) 167, 401, 948, 1028, 1323
BseNI ACTGG 4 cut(s) 436, 445, 865, 1292
BseRI GAGGAG 3 cut(s) 22, 256, 785
BseXI GCAGC 2 cut(s) 352, 1245
BseYI CCCAGC 1 cut(s) 722
BsgI GTGCAG 1 cut(s) 1252
Bsh1236I CGCG 2 cut(s) 131, 371
BshFI GGCC 9 cut(s) 89, 200, 323, 434, 530, 545, 568, 828, 834
BshNI GGYRCC 4 cut(s) 469, 481, 505, 555
BshTI ACCGGT 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 603
BsiHKCI CYCGRG 2 cut(s) 451, 680
BsiWI CGTACG 2 cut(s) 486, 591
BslFI GGGAC 1 cut(s) 1208
BsmAI GTCTC 5 cut(s) 37, 78, 271, 312, 881
BsmBI CGTCTC 2 cut(s) 78, 312
BsmFI GGGAC 1 cut(s) 1208
BsmI GAATGC 1 cut(s) 1172
BsnI GGCC 9 cut(s) 89, 200, 323, 434, 530, 545, 568, 828, 834
BsoBI CYCGRG 2 cut(s) 451, 680
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 4 cut(s) 490, 968, 1068, 1153
BspANI GGCC 9 cut(s) 89, 200, 323, 434, 530, 545, 568, 828, 834
BspCNI CTCAG 5 cut(s) 166, 400, 949, 1027, 1324
BspFNI CGCG 2 cut(s) 131, 371
BspLI GGNNCC 8 cut(s) 90, 324, 471, 483, 507, 525, 557, 582
BspPI GGATC 3 cut(s) 976, 1063, 1148
BspT107I GGYRCC 4 cut(s) 469, 481, 505, 555
BsrFI RCCGGY 7 cut(s) 85, 319, 466, 478, 545, 558, 568
BsrI ACTGG 4 cut(s) 436, 445, 865, 1292
BssAI RCCGGY 7 cut(s) 85, 319, 466, 478, 545, 558, 568
BssECI CCNNGG 8 cut(s) 451, 531, 679, 680, 829, 853, 1190, 1245
BssMI GATC 4 cut(s) 490, 968, 1068, 1153
BssNI GRCGYC 5 cut(s) 140, 374, 470, 482, 587
BssT1I CCWWGG 1 cut(s) 1245
Bst2UI CCWGG 7 cut(s) 197, 431, 533, 830, 855, 1049, 1158
Bst4CI ACNGT 4 cut(s) 718, 767, 811, 1204
BstACI GRCGYC 5 cut(s) 140, 374, 470, 482, 587
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 6 cut(s) 468, 480, 547, 566, 579, 910
BstDEI CTNAG 5 cut(s) 153, 387, 957, 1014, 1332
BstDSI CCRYGG 1 cut(s) 1190
BstF5I GGATG 5 cut(s) 511, 673, 947, 1092, 1141
BstFNI CGCG 2 cut(s) 131, 371
BstH2I RGCGCY 2 cut(s) 473, 485
BstHHI GCGC 2 cut(s) 472, 484
BstKTI GATC 4 cut(s) 493, 971, 1071, 1156
BstMAI GTCTC 5 cut(s) 37, 78, 271, 312, 881
BstMBI GATC 4 cut(s) 490, 968, 1068, 1153
BstMWI GCNNNNNNNGC 6 cut(s) 514, 542, 574, 719, 938, 1176
BstNI CCWGG 7 cut(s) 197, 431, 533, 830, 855, 1049, 1158
BstNSI RCATGY 1 cut(s) 1225
BstSFI CTRYAG 1 cut(s) 1100
BstUI CGCG 2 cut(s) 131, 371
BstV1I GCAGC 2 cut(s) 352, 1245
BstV2I GAAGAC 2 cut(s) 118, 352
BstX2I RGATCY 1 cut(s) 1068
BstYI RGATCY 1 cut(s) 1068
Bsu36I CCTNAGG 1 cut(s) 1332
BsuRI GGCC 9 cut(s) 89, 200, 323, 434, 530, 545, 568, 828, 834
BtgI CCRYGG 1 cut(s) 1190
BtsCI GGATG 5 cut(s) 511, 673, 947, 1092, 1141
BtsI GCAGTG 2 cut(s) 473, 939
BtsIMutI CAGTG 3 cut(s) 473, 714, 939
Cac8I GCNNGC 6 cut(s) 468, 480, 547, 566, 579, 910
CfoI GCGC 2 cut(s) 472, 484
Cfr10I RCCGGY 7 cut(s) 85, 319, 466, 478, 545, 558, 568
Cfr9I CCCGGG 2 cut(s) 451, 680
CseI GACGC 4 cut(s) 148, 382, 595, 1159
Csp6I GTAC 9 cut(s) 145, 157, 379, 391, 448, 487, 556, 592, 812
CspAI ACCGGT 1 cut(s) 558
CviAII CATG 5 cut(s) 10, 244, 962, 1212, 1222
CviQI GTAC 9 cut(s) 145, 157, 379, 391, 448, 487, 556, 592, 812
DdeI CTNAG 5 cut(s) 153, 387, 957, 1014, 1332
DinI GGCGCC 2 cut(s) 471, 483
DpnI GATC 4 cut(s) 492, 970, 1070, 1155
DpnII GATC 4 cut(s) 490, 968, 1068, 1153
DraI TTTAAA 1 cut(s) 222
DraIII CACNNNGTG 1 cut(s) 505
EciI GGCGGA 4 cut(s) 66, 100, 300, 334
Eco130I CCWWGG 1 cut(s) 1245
Eco147I AGGCCT 1 cut(s) 828
Eco32I GATATC 1 cut(s) 919
Eco47I GGWCC 2 cut(s) 523, 1328
Eco57I CTGAAG 1 cut(s) 659
Eco81I CCTNAGG 1 cut(s) 1332
Eco88I CYCGRG 2 cut(s) 451, 680
EcoRI GAATTC 1 cut(s) 1043
EcoRII CCWGG 7 cut(s) 195, 429, 531, 828, 853, 1047, 1156
EcoRV GATATC 1 cut(s) 919
EcoT14I CCWWGG 1 cut(s) 1245
EgeI GGCGCC 2 cut(s) 471, 483
EheI GGCGCC 2 cut(s) 471, 483
ErhI CCWWGG 1 cut(s) 1245
Esp3I CGTCTC 2 cut(s) 78, 312
FaeI CATG 5 cut(s) 13, 247, 965, 1215, 1225
FaqI GGGAC 1 cut(s) 1208
FatI CATG 5 cut(s) 9, 243, 961, 1211, 1221
FauI CCCGC 8 cut(s) 44, 180, 278, 414, 471, 542, 557, 1229
FokI GGATG 5 cut(s) 498, 680, 934, 1099, 1148
FspBI CTAG 1 cut(s) 929
GlaI GCGC 2 cut(s) 471, 483
GsaI CCCAGC 1 cut(s) 726
HaeII RGCGCY 2 cut(s) 473, 485
HaeIII GGCC 9 cut(s) 89, 200, 323, 434, 530, 545, 568, 828, 834
HgaI GACGC 4 cut(s) 148, 382, 595, 1159
HhaI GCGC 2 cut(s) 472, 484
Hin1I GRCGYC 5 cut(s) 140, 374, 470, 482, 587
Hin1II CATG 5 cut(s) 13, 247, 965, 1215, 1225
Hin6I GCGC 2 cut(s) 470, 482
HinP1I GCGC 2 cut(s) 470, 482
HincII GTYRAC 1 cut(s) 1321
HindII GTYRAC 1 cut(s) 1321
HinfI GANTC 2 cut(s) 634, 647
HphI GGTGA 6 cut(s) 485, 625, 724, 1052, 1063, 1090
Hpy166II GTNNAC 2 cut(s) 814, 1321
Hpy188I TCNGA 4 cut(s) 585, 639, 973, 1186
Hpy188III TCNNGA 1 cut(s) 1331
Hpy8I GTNNAC 2 cut(s) 814, 1321
Hpy99I CGWCG 3 cut(s) 142, 376, 589
HpyAV CCTTC 4 cut(s) 601, 637, 749, 931
HpyCH4III ACNGT 4 cut(s) 718, 767, 811, 1204
HpyCH4IV ACGT 3 cut(s) 123, 357, 594
HpyCH4V TGCA 3 cut(s) 577, 749, 1233
HpyF10VI GCNNNNNNNGC 6 cut(s) 514, 542, 574, 719, 938, 1176
HpyF3I CTNAG 5 cut(s) 153, 387, 957, 1014, 1332
HpySE526I ACGT 3 cut(s) 123, 357, 594
Hsp92I GRCGYC 5 cut(s) 140, 374, 470, 482, 587
Hsp92II CATG 5 cut(s) 13, 247, 965, 1215, 1225
HspAI GCGC 2 cut(s) 470, 482
KasI GGCGCC 2 cut(s) 469, 481
KpnI GGTACC 1 cut(s) 559
KroI GCCGGC 3 cut(s) 466, 478, 545
KroNI GCCGGC 3 cut(s) 468, 480, 547
Kzo9I GATC 4 cut(s) 490, 968, 1068, 1153
LmnI GCTCC 4 cut(s) 586, 598, 684, 726
Lsp1109I GCAGC 2 cut(s) 352, 1245
LweI GCATC 4 cut(s) 520, 700, 738, 956
MaeI CTAG 1 cut(s) 929
MaeII ACGT 3 cut(s) 123, 357, 594
MaeIII GTNAC 6 cut(s) 455, 613, 767, 805, 894, 991
MalI GATC 4 cut(s) 492, 970, 1070, 1155
MboI GATC 4 cut(s) 490, 968, 1068, 1153
MboII GAAGA 5 cut(s) 118, 352, 652, 733, 1199
MflI RGATCY 1 cut(s) 1068
MhlI GDGCHC 1 cut(s) 603
MluCI AATT 8 cut(s) 203, 217, 538, 864, 1043, 1116, 1123, 1278
Mly113I GGCGCC 2 cut(s) 470, 482
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 1 cut(s) 608
MreI CGCCGGCG 1 cut(s) 466
MroNI GCCGGC 3 cut(s) 466, 478, 545
MseI TTAA 3 cut(s) 221, 789, 867
MslI CAYNNNNRTG 1 cut(s) 1226
MspA1I CMGCKG 1 cut(s) 1236
Mva1269I GAATGC 1 cut(s) 1172
MvaI CCWGG 7 cut(s) 197, 431, 533, 830, 855, 1049, 1158
MvnI CGCG 2 cut(s) 131, 371
MwoI GCNNNNNNNGC 6 cut(s) 514, 542, 574, 719, 938, 1176
NaeI GCCGGC 3 cut(s) 468, 480, 547
NarI GGCGCC 2 cut(s) 470, 482
NciI CCSGG 8 cut(s) 149, 383, 452, 453, 503, 527, 681, 682
NdeII GATC 4 cut(s) 490, 968, 1068, 1153
NgoMIV GCCGGC 3 cut(s) 466, 478, 545
NlaIII CATG 5 cut(s) 13, 247, 965, 1215, 1225
NlaIV GGNNCC 8 cut(s) 90, 324, 471, 483, 507, 525, 557, 582
NmuCI GTSAC 2 cut(s) 613, 805
NspI RCATGY 1 cut(s) 1225
PceI AGGCCT 1 cut(s) 828
PciI ACATGT 1 cut(s) 1221
PctI GAATGC 1 cut(s) 1172
PdiI GCCGGC 3 cut(s) 468, 480, 547
PfeI GAWTC 1 cut(s) 634
Pfl23II CGTACG 2 cut(s) 486, 591
PfoI TCCNGGA 1 cut(s) 1156
PinAI ACCGGT 1 cut(s) 558
PleI GAGTC 1 cut(s) 655
PluTI GGCGCC 2 cut(s) 473, 485
PpsI GAGTC 1 cut(s) 655
Ppu21I YACGTR 1 cut(s) 595
PscI ACATGT 1 cut(s) 1221
Psp6I CCWGG 7 cut(s) 195, 429, 531, 828, 853, 1047, 1156
PspFI CCCAGC 1 cut(s) 722
PspGI CCWGG 7 cut(s) 195, 429, 531, 828, 853, 1047, 1156
PspLI CGTACG 2 cut(s) 486, 591
PspN4I GGNNCC 8 cut(s) 90, 324, 471, 483, 507, 525, 557, 582
PsuI RGATCY 1 cut(s) 1068
RsaI GTAC 9 cut(s) 146, 158, 380, 392, 449, 488, 557, 593, 813
RsaNI GTAC 9 cut(s) 145, 157, 379, 391, 448, 487, 556, 592, 812
RseI CAYNNNNRTG 1 cut(s) 1226
SaqAI TTAA 3 cut(s) 221, 789, 867
Sau3AI GATC 4 cut(s) 490, 968, 1068, 1153
SchI GAGTC 1 cut(s) 656
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 4 cut(s) 520, 700, 738, 956
SfcI CTRYAG 1 cut(s) 1100
SfoI GGCGCC 2 cut(s) 471, 483
SgrAI CRCCGGYG 1 cut(s) 466
SinI GGWCC 2 cut(s) 523, 1328
SmaI CCCGGG 2 cut(s) 453, 682
SmiMI CAYNNNNRTG 1 cut(s) 1226
Sse9I AATT 8 cut(s) 203, 217, 538, 864, 1043, 1116, 1123, 1278
SseBI AGGCCT 1 cut(s) 828
SspDI GGCGCC 2 cut(s) 469, 481
SspMI CTAG 1 cut(s) 929
StuI AGGCCT 1 cut(s) 828
StyI CCWWGG 1 cut(s) 1245
TaaI ACNGT 4 cut(s) 718, 767, 811, 1204
TaiI ACGT 3 cut(s) 126, 360, 597
TaqI TCGA 1 cut(s) 1131
TasI AATT 8 cut(s) 203, 217, 538, 864, 1043, 1116, 1123, 1278
TatI WGTACW 1 cut(s) 811
TauI GCSGC 8 cut(s) 82, 134, 137, 178, 316, 371, 412, 511
TfiI GAWTC 1 cut(s) 634
Tru1I TTAA 3 cut(s) 221, 789, 867
Tru9I TTAA 3 cut(s) 221, 789, 867
TscAI CASTG 3 cut(s) 480, 721, 939
TseFI GTSAC 2 cut(s) 613, 805
TseI GCWGC 2 cut(s) 365, 1233
Tsp45I GTSAC 2 cut(s) 613, 805
TspDTI ATGAA 1 cut(s) 1110
TspMI CCCGGG 2 cut(s) 451, 680
TspRI CASTG 3 cut(s) 480, 721, 939
VpaK11BI GGWCC 2 cut(s) 523, 1328
XapI RAATTY 2 cut(s) 217, 1043
XceI RCATGY 1 cut(s) 1225
XmaI CCCGGG 2 cut(s) 451, 680
XspI CTAG 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.