FvH4_6g15750

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
9824112 .. 9828380
4269 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15750.t1

Sequence Viewer

Length: 1083 bp
ATGGGAAACATGGGCAGTAGTAGAGCCAACTCCTCTCGCCGGAGACACCGCCAGAGCCACCCTGCTCCGCCCCCACCGGCCCCACCACAGCCCGAAATCTCCGCCAACCGCTACGTCTTCGCTGCCGCGACGCCGTACCCGGCTCAGTACCCGAACCAAAACCCGGCGCAGTACCCGAACCCGGGAGGGTATTTCCAGTACCCGAGTTACTACCCGGCGGCGCCGCTGCCGGCGCCGTACGATCACCACCACCGGGTGCCGCATCCACAGATGGACCCGAACTGGGGCGGCGGGAGGTACCGGTGCGGGCCGGTGATGCAGGTGCCGACGCCGTACGTGGAGCACCAGAAGGCGGTGACGATAAGGAACGATGTGAATTTGAAGAAGGAGTCTTTGAGGGTTGAGCCCGATGAGGAGAACCCCGGGTGGTTTCTGTTGTCTTTCACTTTTGATGCCACTGTTGCTGGGAGCATCACCATCATTTTCTTTGCAAAAGAAGGCGAGGGCTGTAACCTGACACCGATGAAGTTTAGCCTCCTTCCACCTTTGACGGTATATTTTCAACAAGGTTTGGGCCAGAAGTTCAAACAACCCCCTGGAACTGGAATTAACTTCTCAATGTTTGATGAGACAGAGTTAATGAAAGTAGCAGGCTTGGATGTATATCCTCTAGCAGTGAAGGCAGAGGCATCCCCACCCGAGCATGATGGATCAGAGGGAAACTCTGTATCTGTAGCAACAAACTCTCAGATAACTCAGGCTGTATTTGAGAGGGAGAAAGGTGAATTCCAGGTGAGGGTTGTCAAGCAGATTCTTTGGGTGAGTGGGATGAGGTATGAACTACAGGAGATATATGGCATTGGTAATTCAGTCGAAGATGACTTGGACAGTAACGACCCAGGAAAAGAATGTGTCATTTGCCTGTCTGAACCACGGGACACAACTGTTCTTCCATGCCGGCACATGTGTATGTGCAGTGGGTGTGCCAAGGTTTTGAGATACCAGACAAACCGATGCCCGATTTGCCGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTCAACAATGGTCCAGAGGAATGA

Protein Analysis

361

Amino Acids

40.16

Weight (kDa)

6.17

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 125 - 281 2.9e-68 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 302 - 348 1.5e-16 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 303 - 343 4.1e-07 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011828)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 310
Acc36I ACCTGC 1 cut(s) 310
Acc65I GGTACC 1 cut(s) 297
AccB1I GGYRCC 5 cut(s) 220, 232, 256, 297, 322
AccII CGCG 1 cut(s) 128
AclWI GGATC 1 cut(s) 718
AcsI RAATTY 2 cut(s) 376, 785
AcyI GRCGYC 4 cut(s) 131, 221, 233, 329
AdeI CACNNNGTG 1 cut(s) 256
AfaI GTAC 7 cut(s) 137, 149, 173, 200, 239, 299, 335
AflIII ACRYGT 1 cut(s) 963
AgeI ACCGGT 1 cut(s) 300
AgsI TTSAA 3 cut(s) 382, 563, 586
AjnI CCWGG 3 cut(s) 595, 789, 898
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 37, 623
AlwI GGATC 1 cut(s) 718
Ama87I CYCGRG 4 cut(s) 181, 202, 422, 698
AoxI GGCC 3 cut(s) 78, 308, 574
ApeKI GCWGC 2 cut(s) 122, 226
ApoI RAATTY 2 cut(s) 376, 785
AsiGI ACCGGT 1 cut(s) 300
Asp718I GGTACC 1 cut(s) 297
AspLEI GCGC 3 cut(s) 169, 223, 235
AspS9I GGNCC 5 cut(s) 79, 274, 308, 574, 1070
AsuC2I CCSGG 8 cut(s) 140, 164, 182, 183, 215, 254, 423, 424
AsuHPI GGTGA 7 cut(s) 236, 325, 367, 466, 794, 805, 832
AvaI CYCGRG 4 cut(s) 181, 202, 422, 698
AvaII GGWCC 2 cut(s) 274, 1070
BanI GGYRCC 5 cut(s) 220, 232, 256, 297, 322
BanII GRGCYC 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 109, 213
BccI CCATC 3 cut(s) 265, 485, 701
BceAI ACGGC 3 cut(s) 118, 220, 316
BciT130I CCWGG 3 cut(s) 597, 791, 900
BcnI CCSGG 8 cut(s) 140, 164, 182, 183, 215, 254, 423, 424
BcoDI GTCTC 2 cut(s) 37, 623
BfaI CTAG 1 cut(s) 671
BfmI CTRYAG 2 cut(s) 732, 842
BfoI RGCGCY 2 cut(s) 224, 236
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 7 cut(s) 123, 126, 219, 224, 227, 260, 289
BlsI GCNGC 7 cut(s) 124, 127, 220, 225, 228, 261, 290
Bme18I GGWCC 2 cut(s) 274, 1070
BmeT110I CYCGRG 4 cut(s) 181, 202, 422, 698
BmgT120I GGNCC 5 cut(s) 79, 274, 308, 574, 1070
BmiI GGNNCC 7 cut(s) 81, 222, 234, 258, 276, 299, 324
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 6 cut(s) 271, 306, 442, 480, 698, 1004
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 109
BplI GAGNNNNNCTC 2 cut(s) 707, 739
BpuMI CCSGG 8 cut(s) 140, 164, 182, 183, 215, 254, 423, 424
BsaAI YACGTR 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 4 cut(s) 131, 221, 233, 329
BsaJI CCNNGG 7 cut(s) 181, 421, 422, 595, 898, 932, 987
BsaWI WCCGGW 1 cut(s) 300
Bse118I RCCGGY 5 cut(s) 76, 229, 300, 310, 957
Bse1I ACTGG 4 cut(s) 196, 287, 607, 1034
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 3 cut(s) 597, 791, 900
BseDI CCNNGG 7 cut(s) 181, 421, 422, 595, 898, 932, 987
BseGI GGATG 4 cut(s) 262, 664, 689, 834
BseJI GATNNNNATC 1 cut(s) 663
BseMII CTCAG 3 cut(s) 158, 761, 770
BseNI ACTGG 4 cut(s) 196, 287, 607, 1034
BseRI GAGGAG 2 cut(s) 22, 428
BseXI GCAGC 2 cut(s) 109, 213
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 994
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 3 cut(s) 80, 310, 576
BshNI GGYRCC 5 cut(s) 220, 232, 256, 297, 322
BshTI ACCGGT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 345
BsiHKCI CYCGRG 4 cut(s) 181, 202, 422, 698
BsiWI CGTACG 2 cut(s) 237, 333
BslFI GGGAC 1 cut(s) 950
BsmAI GTCTC 2 cut(s) 37, 623
BsmFI GGGAC 1 cut(s) 950
BsnI GGCC 3 cut(s) 80, 310, 576
BsoBI CYCGRG 4 cut(s) 181, 202, 422, 698
Bsp1286I GDGCHC 2 cut(s) 345, 408
Bsp143I GATC 2 cut(s) 241, 710
BspANI GGCC 3 cut(s) 80, 310, 576
BspCNI CTCAG 3 cut(s) 157, 760, 769
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 7 cut(s) 81, 222, 234, 258, 276, 299, 324
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 718
BspT107I GGYRCC 5 cut(s) 220, 232, 256, 297, 322
BsrFI RCCGGY 5 cut(s) 76, 229, 300, 310, 957
BsrI ACTGG 4 cut(s) 196, 287, 607, 1034
BssAI RCCGGY 5 cut(s) 76, 229, 300, 310, 957
BssECI CCNNGG 7 cut(s) 181, 421, 422, 595, 898, 932, 987
BssMI GATC 2 cut(s) 241, 710
BssNI GRCGYC 4 cut(s) 131, 221, 233, 329
BssT1I CCWWGG 1 cut(s) 987
Bst2UI CCWGG 3 cut(s) 597, 791, 900
Bst4CI ACNGT 4 cut(s) 460, 553, 890, 946
BstACI GRCGYC 4 cut(s) 131, 221, 233, 329
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 4 cut(s) 231, 308, 652, 959
BstDEI CTNAG 3 cut(s) 144, 747, 756
BstDSI CCRYGG 1 cut(s) 932
BstF5I GGATG 4 cut(s) 262, 664, 689, 834
BstFNI CGCG 1 cut(s) 128
BstH2I RGCGCY 2 cut(s) 224, 236
BstHHI GCGC 3 cut(s) 169, 223, 235
BstKTI GATC 2 cut(s) 244, 713
BstMAI GTCTC 2 cut(s) 37, 623
BstMBI GATC 2 cut(s) 241, 710
BstMWI GCNNNNNNNGC 5 cut(s) 232, 316, 461, 680, 1023
BstNI CCWGG 3 cut(s) 597, 791, 900
BstNSI RCATGY 1 cut(s) 967
BstSFI CTRYAG 2 cut(s) 732, 842
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 109, 213
BstV2I GAAGAC 1 cut(s) 109
BsuRI GGCC 3 cut(s) 80, 310, 576
BtgI CCRYGG 1 cut(s) 932
BtsCI GGATG 4 cut(s) 262, 664, 689, 834
BtsI GCAGTG 2 cut(s) 681, 982
BtsIMutI CAGTG 3 cut(s) 456, 681, 982
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 4 cut(s) 231, 308, 652, 959
CfoI GCGC 3 cut(s) 169, 223, 235
Cfr10I RCCGGY 5 cut(s) 76, 229, 300, 310, 957
Cfr13I GGNCC 5 cut(s) 79, 274, 308, 574, 1070
Cfr9I CCCGGG 2 cut(s) 181, 422
CseI GACGC 2 cut(s) 139, 337
Csp6I GTAC 7 cut(s) 136, 148, 172, 199, 238, 298, 334
CspAI ACCGGT 1 cut(s) 300
CviAII CATG 4 cut(s) 10, 704, 954, 964
CviQI GTAC 7 cut(s) 136, 148, 172, 199, 238, 298, 334
DdeI CTNAG 3 cut(s) 144, 747, 756
DinI GGCGCC 2 cut(s) 222, 234
DpnI GATC 2 cut(s) 243, 712
DpnII GATC 2 cut(s) 241, 710
DraIII CACNNNGTG 1 cut(s) 256
EciI GGCGGA 2 cut(s) 57, 91
Eco130I CCWWGG 1 cut(s) 987
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 2 cut(s) 274, 1070
Eco88I CYCGRG 4 cut(s) 181, 202, 422, 698
EcoRI GAATTC 1 cut(s) 785
EcoRII CCWGG 3 cut(s) 595, 789, 898
EcoT14I CCWWGG 1 cut(s) 987
EcoT38I GRGCYC 1 cut(s) 408
EgeI GGCGCC 2 cut(s) 222, 234
EheI GGCGCC 2 cut(s) 222, 234
ErhI CCWWGG 1 cut(s) 987
FaeI CATG 4 cut(s) 13, 707, 957, 967
FaqI GGGAC 1 cut(s) 950
FatI CATG 4 cut(s) 9, 703, 953, 963
FauI CCCGC 2 cut(s) 284, 299
Fnu4HI GCNGC 7 cut(s) 123, 126, 219, 224, 227, 260, 289
FokI GGATG 4 cut(s) 249, 671, 676, 841
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 7 cut(s) 123, 126, 219, 224, 227, 260, 289
FspBI CTAG 1 cut(s) 671
GlaI GCGC 3 cut(s) 168, 222, 234
GluI GCNGC 7 cut(s) 123, 126, 219, 224, 227, 260, 289
GsaI CCCAGC 1 cut(s) 468
HaeII RGCGCY 2 cut(s) 224, 236
HaeIII GGCC 3 cut(s) 80, 310, 576
HgaI GACGC 2 cut(s) 139, 337
HhaI GCGC 3 cut(s) 169, 223, 235
Hin1I GRCGYC 4 cut(s) 131, 221, 233, 329
Hin1II CATG 4 cut(s) 13, 707, 957, 967
Hin6I GCGC 3 cut(s) 167, 221, 233
HinP1I GCGC 3 cut(s) 167, 221, 233
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HinfI GANTC 2 cut(s) 389, 811
HphI GGTGA 7 cut(s) 236, 325, 367, 466, 794, 805, 832
Hpy166II GTNNAC 1 cut(s) 1063
Hpy188I TCNGA 3 cut(s) 715, 750, 928
Hpy188III TCNNGA 1 cut(s) 1073
Hpy8I GTNNAC 1 cut(s) 1063
Hpy99I CGWCG 2 cut(s) 133, 331
HpyAV CCTTC 5 cut(s) 343, 379, 491, 548, 673
HpyCH4III ACNGT 4 cut(s) 460, 553, 890, 946
HpyCH4IV ACGT 2 cut(s) 114, 336
HpyCH4V TGCA 3 cut(s) 319, 491, 975
HpyF10VI GCNNNNNNNGC 5 cut(s) 232, 316, 461, 680, 1023
HpyF3I CTNAG 3 cut(s) 144, 747, 756
HpySE526I ACGT 2 cut(s) 114, 336
Hsp92I GRCGYC 4 cut(s) 131, 221, 233, 329
Hsp92II CATG 4 cut(s) 13, 707, 957, 967
HspAI GCGC 3 cut(s) 167, 221, 233
KasI GGCGCC 2 cut(s) 220, 232
KpnI GGTACC 1 cut(s) 301
KroI GCCGGC 2 cut(s) 229, 957
KroNI GCCGGC 2 cut(s) 231, 959
Kzo9I GATC 2 cut(s) 241, 710
LmnI GCTCC 3 cut(s) 70, 340, 468
Lsp1109I GCAGC 2 cut(s) 109, 213
LweI GCATC 6 cut(s) 271, 306, 442, 480, 698, 1004
MaeI CTAG 1 cut(s) 671
MaeII ACGT 2 cut(s) 114, 336
MaeIII GTNAC 4 cut(s) 206, 355, 509, 890
MalI GATC 2 cut(s) 243, 712
MboI GATC 2 cut(s) 241, 710
MboII GAAGA 4 cut(s) 109, 394, 887, 941
MhlI GDGCHC 2 cut(s) 345, 408
MluCI AATT 4 cut(s) 376, 606, 785, 865
Mly113I GGCGCC 2 cut(s) 221, 233
MlyI GAGTC 1 cut(s) 398
MroNI GCCGGC 2 cut(s) 229, 957
MseI TTAA 2 cut(s) 609, 638
MslI CAYNNNNRTG 1 cut(s) 968
MspA1I CMGCKG 1 cut(s) 226
MvaI CCWGG 3 cut(s) 597, 791, 900
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 5 cut(s) 232, 316, 461, 680, 1023
NaeI GCCGGC 2 cut(s) 231, 959
NarI GGCGCC 2 cut(s) 221, 233
NciI CCSGG 8 cut(s) 140, 164, 182, 183, 215, 254, 423, 424
NdeII GATC 2 cut(s) 241, 710
NgoMIV GCCGGC 2 cut(s) 229, 957
NlaIII CATG 4 cut(s) 13, 707, 957, 967
NlaIV GGNNCC 7 cut(s) 81, 222, 234, 258, 276, 299, 324
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 1 cut(s) 967
PaqCI CACCTGC 1 cut(s) 310
PciI ACATGT 1 cut(s) 963
PdiI GCCGGC 2 cut(s) 231, 959
PfeI GAWTC 1 cut(s) 811
Pfl23II CGTACG 2 cut(s) 237, 333
PinAI ACCGGT 1 cut(s) 300
PkrI GCNGC 7 cut(s) 124, 127, 220, 225, 228, 261, 290
PleI GAGTC 1 cut(s) 397
PluTI GGCGCC 2 cut(s) 224, 236
PpsI GAGTC 1 cut(s) 397
Ppu21I YACGTR 1 cut(s) 337
PscI ACATGT 1 cut(s) 963
Psp6I CCWGG 3 cut(s) 595, 789, 898
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 3 cut(s) 595, 789, 898
PspLI CGTACG 2 cut(s) 237, 333
PspN4I GGNNCC 7 cut(s) 81, 222, 234, 258, 276, 299, 324
PspPI GGNCC 5 cut(s) 79, 274, 308, 574, 1070
RsaI GTAC 7 cut(s) 137, 149, 173, 200, 239, 299, 335
RsaNI GTAC 7 cut(s) 136, 148, 172, 199, 238, 298, 334
RseI CAYNNNNRTG 1 cut(s) 968
SaqAI TTAA 2 cut(s) 609, 638
SatI GCNGC 7 cut(s) 123, 126, 219, 224, 227, 260, 289
Sau3AI GATC 2 cut(s) 241, 710
Sau96I GGNCC 5 cut(s) 79, 274, 308, 574, 1070
SchI GAGTC 1 cut(s) 398
SduI GDGCHC 2 cut(s) 345, 408
SfaNI GCATC 6 cut(s) 271, 306, 442, 480, 698, 1004
SfcI CTRYAG 2 cut(s) 732, 842
SfoI GGCGCC 2 cut(s) 222, 234
SinI GGWCC 2 cut(s) 274, 1070
SmaI CCCGGG 2 cut(s) 183, 424
SmiMI CAYNNNNRTG 1 cut(s) 968
Sse9I AATT 4 cut(s) 376, 606, 785, 865
SspDI GGCGCC 2 cut(s) 220, 232
SspMI CTAG 1 cut(s) 671
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 4 cut(s) 460, 553, 890, 946
TaiI ACGT 2 cut(s) 117, 339
TaqI TCGA 1 cut(s) 873
TasI AATT 4 cut(s) 376, 606, 785, 865
TauI GCSGC 5 cut(s) 128, 221, 226, 262, 291
TfiI GAWTC 1 cut(s) 811
Tru1I TTAA 2 cut(s) 609, 638
Tru9I TTAA 2 cut(s) 609, 638
TscAI CASTG 3 cut(s) 463, 681, 982
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 122, 226
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 3 cut(s) 539, 656, 852
TspMI CCCGGG 2 cut(s) 181, 422
TspRI CASTG 3 cut(s) 463, 681, 982
VpaK11BI GGWCC 2 cut(s) 274, 1070
XapI RAATTY 2 cut(s) 376, 785
XceI RCATGY 1 cut(s) 967
XmaI CCCGGG 2 cut(s) 181, 422
XspI CTAG 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.