Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013824

Physical Location & Seq

Genomic Coordinates Forward (+)

3019249 .. 3023052

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGTCTACCCCAGCTGAATCTTCAGACTCGAAATCGAAGAAAGATTTCAGTACTGCTATTCTCGAGAGGAAGAAGTCTCCGAACCGTCTCGTCGTCGATGAGGCTATCAACGATGATAACTCCGTCGTCTCTCTTCACCCTGCAACCATGGAGAAGCTTCAGCTCTTCCGTGGTGATACCATTCTCATCAAGGGTAAGAAGAGGAAGGACACTGTCTGCATTGCTCTTGCTGATGAGACATGTGAGGAGCCAAAGATCAGAATGAATAAAGTAGTCAGATCTAACTTGAGGGTTAGACTGGGAGATGTTATATCTGTTCACCAATGCCCAGACGTCAAGTACGGAAAGCGTGTTCACATCCTGCCTGTTGATGATACTGTTGAAGGAGTGACTGGAAACCTATTTGATGCTTACCTGAAACCTTATTTCCTTGAGGCATACCGTCCAGTGAGGAAGGGTGATCTCTTCCTAGTCAGAGGAGGAATGAGGAGTGTGGAGTTCAAAGTTATAGAGACAGATCCTGCTGAGTACTGCGTGGTTGCTCCAGACACAGAGATTTTCTGTGAGGGTGAGCCTGTGAAGAGAGAGGATGAAGAAAGGCTAGATGATGTAGGTTATGATGATGTTGGTGGTGTCAGGAAACAGATGGCTCAGATTAGGGAACTTGTTGAACTTCCCTTGAGGCATCCACAGCTATTCAAGTCGATTGGTGTTAAGCCACCGAAGGGAATTCTTCTTTATGGACCACCTGGGTCTGGAAAGACTTTGATCGCTCGTGCTGTGGCTAATGAAACGGGTGCCTTTTTCTTCTGTATCAACGGACCTGAGATCATGTCCAAATTGGCTGGTGAGAGTGAGAGCAACCTCAGGAAAGCATTCGAGGAGGCTGAGAAAAATGCGCCTTCAATCATATTCATTGATGAGATCGACTCTATTGCACCGAAAAGAGAGAAGACTAATGGAGAGGTTGAGAGGAGGATTGTCTCTCAGCTCCTTACGCTAATGGATGGACTGAAATCTCGTGCTCATGTTATCGTCATGGGAGCAACCAATCGCCCCAACAGTATCGACCCAGCTTTGAGAAGGTTTGGAAGATTTGACAGGGAGATCGATATTGGAGTTCCTGACGAAATTGGACGTCTTGAAGTTCTGAGGATCCATACAAAGAACATGAAGCTGGCTGAAGATGTGGATCTCGAAAGGATCTCAAAGGACACACACGGTTACGTCGGTGCTGATCTTGCAGCTTTGTGCACAGAGGCCGCCCTGCAATGCATCAGGGAGAAGATGGATGTGATTGATCTGGAAGATGACTCCATAGACGCTGAAATCCTCAATTCCATGGCAGTCACTAATGAACATTTCCACACTGCTCTCGGGAACAGCAACCCATCTGCACTTCGTGAAACTGTTGTGGAGGTTCCCAACGTCTCTTGGAATGATATTGGAGGTCTTGAGAATGTCAAGAGAGAGCTCCAGGAGACTGTTCAATACCCAGTCGAGCACCCAGAGAAGTTTGAGAAATTCGGGATGTCTCCATCAAAGGGAGTCCTTTTCTACGGTCCTCCTGGATGTGGGAAAACCCTTTTGGCCAAAGCTATTGCCAACGAGTGCCAAGCTAATTTCATCAGTGTCAAGGGTCCCGAGCTTCTGACAATGTGGTTTGGAGAGAGTGAAGCAAATGTTCGTGAAATCTTCGACAAGGCCCGTCAATCCGCTCCATGTGTTCTTTTCTTTGATGAGCTCGACTCCATTGCAACTCAGAGAGGAGGTGGAAGTGGTGGCGATGGAGGTGGTGCTGCGGACAGAGTCTTGAACCAGCTTTTGACTGAGATGGACGGAATGAATGCCAAGAAAACCGTCTTCATCATCGGAGCTACCAACAGACCTGACATTATCGATTCAGCTCTTCTCCGTCCTGGAAGGCTTGACCAGCTCATTTACATTCCACTACCAGATGAGGATTCCCGTCTCAATATCTTCAAGGCCGCCTTGAGGAAATCTCCTATTGCTAAAGATGTAGACATCGGTGCACTTGCTAAATACACTCAGGGTTTCAGTGGTGCTGATATCACTGAGATTTGCCAGAGAGCTTGCAAGTACGCCATCAGAGAAAACATTGAGAAGGACATTGAAAAGGAGAAGAGGAGGAGCGAGAACCCAGAGGCAATGGAGGAAGATGGAGTGGATGAAGTATCAGAGATCAAAGCTGCACACTTTGAGGAGTCGATGAAGTATGCGCGTAGGAGTGTGAGTGATGCAGACATCAGGAAGTACCAAGCCTTTGCTCAGACGTTGCAGCAGTCTAGAGGGTTCGGTTCTGAGTTCAGGTTCGAGAATTCTGCTGGTTCAGGTGCCACCACTGGAGTCGCAGATCCGTTTGCCACGTCTGCAGCCGCTGCTGGGGACGATGATGATCTCTACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005794 GO:0005819 GO:0005829 GO:0005840 GO:0005856 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022626 GO:0030054 GO:0030154 GO:0030312 GO:0031347 GO:0031348 GO:0031647 GO:0031648 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044706 GO:0046686 GO:0048046 GO:0048468 GO:0048519 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051704 GO:0055044 GO:0060560 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0071944 GO:0080134 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

809

Amino Acids

89.39

Weight (kDa)

5.13

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	29 - 110	6.8e-23	Cell division protein 48 (CDC48), N-terminal domain
CDC48_2	PF02933	130 - 194	8.7e-12	Cell division protein 48 (CDC48), domain 2
AAA	PF00004	244 - 373	1e-47	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	396 - 437	8.2e-16	AAA+ lid domain
AAA	PF00004	517 - 651	1e-46	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	673 - 714	1.6e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09840 AT5G03340
fragaria_vesca	FvH4_5g05770 FvH4_5g05770
malus_domestica	MD06G1170300.v1.1 MD14G1175800.v1.1
pyrus_communis	pycom06g15170 pycom14g14690
rosa_chinensis	RchiOBHm_Chr7g0193051
rosa_laevigata	RLG00000004299
rosa_multiflora	Rmu_sc0028357.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262420
rosa_rugosa	Rorug07G0007300
rosa_samantha	Rh7AG132400 Rh7CG136400 Rh7DG134300
rosa_wichuraiana	Rw7G011310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	336, 1141
AccB1I	GGYRCC	2 cut(s)	797, 2354
AccBSI	CCGCTC	1 cut(s)	1718
AccI	GTMKAC	2 cut(s)	5, 2022
AccII	CGCG	1 cut(s)	2242
AciI	CCGC	5 cut(s)	1263, 1716, 1802, 1989, 2397
AclWI	GGATC	6 cut(s)	512, 1150, 1163, 1200, 1211, 2369
AcoI	YGGCCR	1 cut(s)	1590
AcsI	RAATTY	3 cut(s)	729, 1523, 2338
AcuI	CTGAAG	3 cut(s)	6, 143, 1203
AcyI	GRCGYC	2 cut(s)	333, 1138
AdeI	CACNNNGTG	1 cut(s)	1403
AfaI	GTAC	5 cut(s)	52, 341, 530, 2102, 2276
AfiI	CCNNNNNNNGG	6 cut(s)	725, 755, 1544, 1574, 1995, 2403
AflIII	ACRYGT	1 cut(s)	239
AjiI	CACGTC	1 cut(s)	2388
AjnI	CCWGG	4 cut(s)	748, 1476, 1567, 1918
AjuI	GAANNNNNNNTTGG	2 cut(s)	1571, 1603
AloI	GAACNNNNNNTCC	2 cut(s)	336, 368
Alw21I	GWGCWC	6 cut(s)	1027, 1256, 1476, 1506, 1746, 2035
Alw44I	GTGCAC	2 cut(s)	1252, 2031
AlwI	GGATC	6 cut(s)	512, 1150, 1163, 1200, 1211, 2369
AlwNI	CAGNNNCTG	2 cut(s)	521, 2399
Ama87I	CYCGRG	3 cut(s)	62, 1376, 1643
AoxI	GGCC	4 cut(s)	1260, 1590, 1704, 1986
ApaLI	GTGCAC	2 cut(s)	1252, 2031
ApeKI	GCWGC	6 cut(s)	1244, 1799, 2210, 2299, 2393, 2399
ApoI	RAATTY	3 cut(s)	729, 1523, 2338
Asp700I	GAANNNNTTC	2 cut(s)	44, 875
AspLEI	GCGC	2 cut(s)	901, 2242
AspS9I	GGNCC	5 cut(s)	743, 821, 1562, 1640, 1705
AsuHPI	GGTGA	6 cut(s)	128, 185, 311, 470, 581, 860
AvaI	CYCGRG	3 cut(s)	62, 1376, 1643
AvaII	GGWCC	4 cut(s)	743, 821, 1562, 1640
AxyI	CCTNAGG	1 cut(s)	866
BaeGI	GKGCMC	2 cut(s)	1256, 2035
BalI	TGGCCA	1 cut(s)	1592
BamHI	GGATCC	1 cut(s)	1155
BanI	GGYRCC	2 cut(s)	797, 2354
BanII	GRGCYC	2 cut(s)	1476, 1746
BauI	CACGAG	2 cut(s)	774, 1020
BbsI	GAAGAC	2 cut(s)	959, 1855
Bbv12I	GWGCWC	6 cut(s)	1027, 1256, 1476, 1506, 1746, 2035
BbvI	GCAGC	6 cut(s)	1256, 1786, 2197, 2311, 2386, 2405
BccI	CCATC	9 cut(s)	640, 1001, 1282, 1399, 1546, 1781, 1828, 2114, 2174
BcgI	CGANNNNNNTGC	6 cut(s)	917, 951, 1736, 1770, 2324, 2358
BciT130I	CCWGG	4 cut(s)	750, 1478, 1569, 1920
BfaI	CTAG	3 cut(s)	470, 602, 2307
BfmI	CTRYAG	1 cut(s)	2391
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	9 cut(s)	1245, 1263, 1800, 1989, 2211, 2300, 2394, 2397, 2400
BlsI	GCNGC	9 cut(s)	1246, 1264, 1801, 1990, 2212, 2301, 2395, 2398, 2401
BmcAI	AGTACT	2 cut(s)	52, 530
Bme1390I	CCNGG	4 cut(s)	750, 1478, 1569, 1920
Bme18I	GGWCC	4 cut(s)	743, 821, 1562, 1640
BmeT110I	CYCGRG	3 cut(s)	62, 1376, 1643
BmgBI	CACGTC	1 cut(s)	2388
BmgT120I	GGNCC	5 cut(s)	743, 821, 1562, 1640, 1705
BmiI	GGNNCC	7 cut(s)	249, 799, 1157, 1422, 1641, 1642, 2356
BmrFI	CCNGG	4 cut(s)	750, 1478, 1569, 1920
BmrI	ACTGGG	2 cut(s)	308, 1490
BmsI	GCATC	4 cut(s)	397, 694, 1284, 2248
BmuI	ACTGGG	2 cut(s)	308, 1490
BpiI	GAAGAC	2 cut(s)	959, 1855
BplI	GAGNNNNNCTC	6 cut(s)	914, 946, 1733, 1765, 1987, 2019
BpmI	CTGGAG	3 cut(s)	528, 1460, 2385
BpuEI	CTTGAG	5 cut(s)	307, 452, 700, 1475, 2014
Bsa29I	ATCGAT	2 cut(s)	1110, 1899
BsaBI	GATNNNNATC	2 cut(s)	1191, 2415
BsaHI	GRCGYC	2 cut(s)	333, 1138
BsaJI	CCNNGG	4 cut(s)	147, 169, 749, 1341
BsaXI	ACNNNNNCTCC	2 cut(s)	2239, 2269
Bsc4I	CCNNNNNNNGG	6 cut(s)	725, 755, 1544, 1574, 1995, 2403
Bse1I	ACTGG	5 cut(s)	303, 397, 446, 1496, 2368
Bse21I	CCTNAGG	1 cut(s)	866
Bse3DI	GCAATG	4 cut(s)	219, 1277, 1752, 2175
Bse8I	GATNNNNATC	2 cut(s)	1191, 2415
BseBI	CCWGG	4 cut(s)	750, 1478, 1569, 1920
BseCI	ATCGAT	2 cut(s)	1110, 1899
BseDI	CCNNGG	4 cut(s)	147, 169, 749, 1341
BseGI	GGATG	8 cut(s)	357, 595, 685, 1012, 1297, 1536, 1577, 2194
BseJI	GATNNNNATC	2 cut(s)	1191, 2415
BseLI	CCNNNNNNNGG	6 cut(s)	725, 755, 1544, 1574, 1995, 2403
BseMI	GCAATG	4 cut(s)	219, 1277, 1752, 2175
BseNI	ACTGG	5 cut(s)	303, 397, 446, 1496, 2368
BseRI	GAGGAG	9 cut(s)	260, 492, 502, 896, 988, 1782, 2161, 2164, 2237
BseSI	GKGCMC	2 cut(s)	1256, 2035
BseXI	GCAGC	6 cut(s)	1256, 1786, 2197, 2311, 2386, 2405
BseYI	CCCAGC	3 cut(s)	10, 1072, 2402
BsgI	GTGCAG	2 cut(s)	1380, 2196
Bsh1236I	CGCG	1 cut(s)	2242
BshFI	GGCC	4 cut(s)	1262, 1592, 1706, 1988
BshNI	GGYRCC	2 cut(s)	797, 2354
BshVI	ATCGAT	2 cut(s)	1110, 1899
BsiHKAI	GWGCWC	6 cut(s)	1027, 1256, 1476, 1506, 1746, 2035
BsiHKCI	CYCGRG	3 cut(s)	62, 1376, 1643
BslFI	GGGAC	2 cut(s)	1626, 2420
BslI	CCNNNNNNNGG	6 cut(s)	725, 755, 1544, 1574, 1995, 2403
BsmBI	CGTCTC	4 cut(s)	92, 133, 1435, 1976
BsmFI	GGGAC	2 cut(s)	1626, 2420
BsmI	GAATGC	2 cut(s)	875, 1852
BsnI	GGCC	4 cut(s)	1262, 1592, 1706, 1988
BsoBI	CYCGRG	3 cut(s)	62, 1376, 1643
Bsp1286I	GDGCHC	6 cut(s)	1027, 1256, 1476, 1506, 1746, 2035
Bsp19I	CCATGG	2 cut(s)	147, 1341
BspACI	CCGC	5 cut(s)	1263, 1716, 1802, 1989, 2397
BspANI	GGCC	4 cut(s)	1262, 1592, 1706, 1988
BspDI	ATCGAT	2 cut(s)	1110, 1899
BspFNI	CGCG	1 cut(s)	2242
BspLI	GGNNCC	7 cut(s)	249, 799, 1157, 1422, 1641, 1642, 2356
BspMAI	CTGCAG	1 cut(s)	2395
BspPI	GGATC	6 cut(s)	512, 1150, 1163, 1200, 1211, 2369
BspQI	GCTCTTC	2 cut(s)	170, 1914
BspT107I	GGYRCC	2 cut(s)	797, 2354
BsrBI	CCGCTC	1 cut(s)	1718
BsrDI	GCAATG	4 cut(s)	219, 1277, 1752, 2175
BsrI	ACTGG	5 cut(s)	303, 397, 446, 1496, 2368
BssECI	CCNNGG	4 cut(s)	147, 169, 749, 1341
BssNI	GRCGYC	2 cut(s)	333, 1138
BssSI	CACGAG	2 cut(s)	774, 1020
BssT1I	CCWWGG	2 cut(s)	147, 1341
Bst2BI	CACGAG	2 cut(s)	774, 1020
Bst2UI	CCWGG	4 cut(s)	750, 1478, 1569, 1920
Bst6I	CTCTTC	7 cut(s)	138, 170, 194, 470, 575, 1914, 2138
BstACI	GRCGYC	2 cut(s)	333, 1138
BstAPI	GCANNNNNTGC	1 cut(s)	2399
BstC8I	GCNNGC	2 cut(s)	1179, 2095
BstDSI	CCRYGG	3 cut(s)	147, 169, 1341
BstF5I	GGATG	8 cut(s)	357, 595, 685, 1012, 1297, 1536, 1577, 2194
BstFNI	CGCG	1 cut(s)	2242
BstHHI	GCGC	2 cut(s)	901, 2242
BstMWI	GCNNNNNNNGC	6 cut(s)	691, 997, 1241, 1933, 2390, 2399
BstNI	CCWGG	4 cut(s)	750, 1478, 1569, 1920
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	4 cut(s)	748, 1476, 1567, 1918
BstSFI	CTRYAG	1 cut(s)	2391
BstSLI	GKGCMC	2 cut(s)	1256, 2035
BstUI	CGCG	1 cut(s)	2242
BstV1I	GCAGC	6 cut(s)	1256, 1786, 2197, 2311, 2386, 2405
BstV2I	GAAGAC	2 cut(s)	959, 1855
BstX2I	RGATCY	6 cut(s)	278, 517, 1155, 1192, 1203, 2374
BstYI	RGATCY	6 cut(s)	278, 517, 1155, 1192, 1203, 2374
Bsu15I	ATCGAT	2 cut(s)	1110, 1899
Bsu36I	CCTNAGG	1 cut(s)	866
BsuRI	GGCC	4 cut(s)	1262, 1592, 1706, 1988
BsuTUI	ATCGAT	2 cut(s)	1110, 1899
BtgI	CCRYGG	3 cut(s)	147, 169, 1341
BtgZI	GCGATG	1 cut(s)	1800
BtrI	CACGTC	1 cut(s)	2388
BtsCI	GGATG	8 cut(s)	357, 595, 685, 1012, 1297, 1536, 1577, 2194
BtsI	GCAGTG	1 cut(s)	1368
BtsIMutI	CAGTG	7 cut(s)	210, 453, 1368, 1636, 2065, 2073, 2361
Cac8I	GCNNGC	2 cut(s)	1179, 2095
CaiI	CAGNNNCTG	2 cut(s)	521, 2399
CfoI	GCGC	2 cut(s)	901, 2242
Cfr13I	GGNCC	5 cut(s)	743, 821, 1562, 1640, 1705
ClaI	ATCGAT	2 cut(s)	1110, 1899
CseI	GACGC	1 cut(s)	1331
Csp6I	GTAC	5 cut(s)	51, 340, 529, 2101, 2275
CviAII	CATG	8 cut(s)	148, 240, 832, 1028, 1039, 1171, 1342, 1722
CviQI	GTAC	5 cut(s)	51, 340, 529, 2101, 2275
DraIII	CACNNNGTG	1 cut(s)	1403
EaeI	YGGCCR	1 cut(s)	1590
Eam1104I	CTCTTC	7 cut(s)	138, 170, 194, 470, 575, 1914, 2138
EarI	CTCTTC	7 cut(s)	138, 170, 194, 470, 575, 1914, 2138
Ecl136II	GAGCTC	2 cut(s)	1474, 1744
Eco130I	CCWWGG	2 cut(s)	147, 1341
Eco24I	GRGCYC	2 cut(s)	1476, 1746
Eco32I	GATATC	1 cut(s)	2071
Eco47I	GGWCC	4 cut(s)	743, 821, 1562, 1640
Eco53kI	GAGCTC	2 cut(s)	1474, 1744
Eco57I	CTGAAG	3 cut(s)	6, 143, 1203
Eco81I	CCTNAGG	1 cut(s)	866
Eco88I	CYCGRG	3 cut(s)	62, 1376, 1643
EcoICRI	GAGCTC	2 cut(s)	1474, 1744
EcoO109I	RGGNCCY	1 cut(s)	1640
EcoRI	GAATTC	2 cut(s)	729, 2338
EcoRII	CCWGG	4 cut(s)	748, 1476, 1567, 1918
EcoRV	GATATC	1 cut(s)	2071
EcoT14I	CCWWGG	2 cut(s)	147, 1341
EcoT22I	ATGCAT	1 cut(s)	1277
EcoT38I	GRGCYC	2 cut(s)	1476, 1746
ErhI	CCWWGG	2 cut(s)	147, 1341
Esp3I	CGTCTC	4 cut(s)	92, 133, 1435, 1976
FaeI	CATG	8 cut(s)	151, 243, 835, 1031, 1042, 1174, 1345, 1725
FalI	AAGNNNNNCTT	2 cut(s)	1976, 2008
FaqI	GGGAC	2 cut(s)	1626, 2420
FatI	CATG	8 cut(s)	147, 239, 831, 1027, 1038, 1170, 1341, 1721
FblI	GTMKAC	2 cut(s)	5, 2022
Fnu4HI	GCNGC	9 cut(s)	1245, 1263, 1800, 1989, 2211, 2300, 2394, 2397, 2400
FokI	GGATG	8 cut(s)	344, 602, 672, 1019, 1304, 1543, 1584, 2201
FriOI	GRGCYC	2 cut(s)	1476, 1746
Fsp4HI	GCNGC	9 cut(s)	1245, 1263, 1800, 1989, 2211, 2300, 2394, 2397, 2400
FspBI	CTAG	3 cut(s)	470, 602, 2307
GlaI	GCGC	2 cut(s)	900, 2241
GluI	GCNGC	9 cut(s)	1245, 1263, 1800, 1989, 2211, 2300, 2394, 2397, 2400
GsaI	CCCAGC	3 cut(s)	14, 1076, 2406
GsuI	CTGGAG	3 cut(s)	528, 1460, 2385
HaeIII	GGCC	4 cut(s)	1262, 1592, 1706, 1988
HgaI	GACGC	1 cut(s)	1331
HhaI	GCGC	2 cut(s)	901, 2242
Hin1I	GRCGYC	2 cut(s)	333, 1138
Hin1II	CATG	8 cut(s)	151, 243, 835, 1031, 1042, 1174, 1345, 1725
Hin6I	GCGC	2 cut(s)	899, 2240
HinP1I	GCGC	2 cut(s)	899, 2240
HindIII	AAGCTT	1 cut(s)	155
HphI	GGTGA	6 cut(s)	128, 185, 311, 470, 581, 860
Hpy166II	GTNNAC	6 cut(s)	6, 319, 355, 1254, 2023, 2033
Hpy8I	GTNNAC	6 cut(s)	6, 319, 355, 1254, 2023, 2033
Hpy99I	CGWCG	4 cut(s)	95, 98, 128, 1232
HpyAV	CCTTC	8 cut(s)	199, 377, 448, 718, 912, 1077, 1917, 2119
HpyCH4IV	ACGT	6 cut(s)	333, 1138, 1227, 1428, 2294, 2387
HpyF10VI	GCNNNNNNNGC	6 cut(s)	691, 997, 1241, 1933, 2390, 2399
HpySE526I	ACGT	6 cut(s)	333, 1138, 1227, 1428, 2294, 2387
Hsp92I	GRCGYC	2 cut(s)	333, 1138
Hsp92II	CATG	8 cut(s)	151, 243, 835, 1031, 1042, 1174, 1345, 1725
HspAI	GCGC	2 cut(s)	899, 2240
KflI	GGGWCCC	1 cut(s)	1640
LguI	GCTCTTC	2 cut(s)	170, 1914
LmnI	GCTCC	8 cut(s)	247, 547, 996, 1043, 1479, 1723, 1874, 2151
Lsp1109I	GCAGC	6 cut(s)	1256, 1786, 2197, 2311, 2386, 2405
LweI	GCATC	4 cut(s)	397, 694, 1284, 2248
MaeI	CTAG	3 cut(s)	470, 602, 2307
MaeII	ACGT	6 cut(s)	333, 1138, 1227, 1428, 2294, 2387
MaeIII	GTNAC	3 cut(s)	388, 1223, 1348
MbiI	CCGCTC	1 cut(s)	1718
MflI	RGATCY	6 cut(s)	278, 517, 1155, 1192, 1203, 2374
MhlI	GDGCHC	6 cut(s)	1027, 1256, 1476, 1506, 1746, 2035
MlsI	TGGCCA	1 cut(s)	1592
MluCI	AATT	8 cut(s)	729, 839, 1131, 1336, 1523, 1621, 2338, 2425
MluNI	TGGCCA	1 cut(s)	1592
MlyI	GAGTC	8 cut(s)	20, 923, 1307, 1557, 1742, 1818, 2234, 2376
Mox20I	TGGCCA	1 cut(s)	1592
Mph1103I	ATGCAT	1 cut(s)	1277
MroXI	GAANNNNTTC	2 cut(s)	44, 875
MscI	TGGCCA	1 cut(s)	1592
MseI	TTAA	1 cut(s)	714
Msp20I	TGGCCA	1 cut(s)	1592
MspA1I	CMGCKG	2 cut(s)	14, 2399
MspR9I	CCNGG	4 cut(s)	750, 1478, 1569, 1920
Mva1269I	GAATGC	2 cut(s)	875, 1852
MvaI	CCWGG	4 cut(s)	750, 1478, 1569, 1920
MvnI	CGCG	1 cut(s)	2242
MwoI	GCNNNNNNNGC	6 cut(s)	691, 997, 1241, 1933, 2390, 2399
NcoI	CCATGG	2 cut(s)	147, 1341
NlaIII	CATG	8 cut(s)	151, 243, 835, 1031, 1042, 1174, 1345, 1725
NlaIV	GGNNCC	7 cut(s)	249, 799, 1157, 1422, 1641, 1642, 2356
NmuCI	GTSAC	2 cut(s)	388, 1348
NsiI	ATGCAT	1 cut(s)	1277
NspI	RCATGY	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	62
PciI	ACATGT	1 cut(s)	239
PciSI	GCTCTTC	2 cut(s)	170, 1914
PctI	GAATGC	2 cut(s)	875, 1852
PdmI	GAANNNNTTC	2 cut(s)	44, 875
PfeI	GAWTC	3 cut(s)	17, 1901, 1964
PflFI	GACNNNGTC	2 cut(s)	212, 1808
PfoI	TCCNGGA	3 cut(s)	1476, 1567, 1918
PkrI	GCNGC	9 cut(s)	1246, 1264, 1801, 1990, 2212, 2301, 2395, 2398, 2401
PleI	GAGTC	8 cut(s)	20, 923, 1307, 1556, 1742, 1817, 2233, 2375
PpsI	GAGTC	8 cut(s)	20, 923, 1307, 1556, 1742, 1817, 2233, 2375
PpuMI	RGGWCCY	1 cut(s)	1640
PscI	ACATGT	1 cut(s)	239
Psp124BI	GAGCTC	2 cut(s)	1476, 1746
Psp5II	RGGWCCY	1 cut(s)	1640
Psp6I	CCWGG	4 cut(s)	748, 1476, 1567, 1918
PspFI	CCCAGC	3 cut(s)	10, 1072, 2402
PspGI	CCWGG	4 cut(s)	748, 1476, 1567, 1918
PspN4I	GGNNCC	7 cut(s)	249, 799, 1157, 1422, 1641, 1642, 2356
PspPI	GGNCC	5 cut(s)	743, 821, 1562, 1640, 1705
PspPPI	RGGWCCY	1 cut(s)	1640
PstI	CTGCAG	1 cut(s)	2395
PstNI	CAGNNNCTG	2 cut(s)	521, 2399
PsuI	RGATCY	6 cut(s)	278, 517, 1155, 1192, 1203, 2374
PsyI	GACNNNGTC	2 cut(s)	212, 1808
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	5 cut(s)	52, 341, 530, 2102, 2276
RsaNI	GTAC	5 cut(s)	51, 340, 529, 2101, 2275
SacI	GAGCTC	2 cut(s)	1476, 1746
SapI	GCTCTTC	2 cut(s)	170, 1914
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	9 cut(s)	1245, 1263, 1800, 1989, 2211, 2300, 2394, 2397, 2400
Sau96I	GGNCC	5 cut(s)	743, 821, 1562, 1640, 1705
ScaI	AGTACT	2 cut(s)	52, 530
SchI	GAGTC	8 cut(s)	20, 923, 1307, 1557, 1742, 1818, 2234, 2376
ScrFI	CCNGG	4 cut(s)	750, 1478, 1569, 1920
SduI	GDGCHC	6 cut(s)	1027, 1256, 1476, 1506, 1746, 2035
SfaNI	GCATC	4 cut(s)	397, 694, 1284, 2248
SfcI	CTRYAG	1 cut(s)	2391
Sfr274I	CTCGAG	1 cut(s)	62
SinI	GGWCC	4 cut(s)	743, 821, 1562, 1640
SlaI	CTCGAG	1 cut(s)	62
SmlI	CTYRAG	6 cut(s)	62, 286, 431, 679, 1454, 1993
SmoI	CTYRAG	6 cut(s)	62, 286, 431, 679, 1454, 1993
Sse9I	AATT	8 cut(s)	729, 839, 1131, 1336, 1523, 1621, 2338, 2425
SsiI	CCGC	5 cut(s)	1263, 1716, 1802, 1989, 2397
SspMI	CTAG	3 cut(s)	470, 602, 2307
SstI	GAGCTC	2 cut(s)	1476, 1746
StyD4I	CCNGG	4 cut(s)	748, 1476, 1567, 1918
StyI	CCWWGG	2 cut(s)	147, 1341
TaiI	ACGT	6 cut(s)	336, 1141, 1230, 1431, 2297, 2390
TasI	AATT	8 cut(s)	729, 839, 1131, 1336, 1523, 1621, 2338, 2425
TatI	WGTACW	2 cut(s)	50, 528
TauI	GCSGC	3 cut(s)	1265, 1991, 2399
TfiI	GAWTC	3 cut(s)	17, 1901, 1964
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	7 cut(s)	217, 453, 1375, 1636, 2065, 2080, 2368
TseFI	GTSAC	2 cut(s)	388, 1348
TseI	GCWGC	6 cut(s)	1244, 1799, 2210, 2299, 2393, 2399
Tsp45I	GTSAC	2 cut(s)	388, 1348
TspGWI	ACGGA	7 cut(s)	112, 158, 357, 834, 1854, 1904, 2367
TspRI	CASTG	7 cut(s)	217, 453, 1375, 1636, 2065, 2080, 2368
Tth111I	GACNNNGTC	2 cut(s)	212, 1808
VneI	GTGCAC	2 cut(s)	1252, 2031
VpaK11BI	GGWCC	4 cut(s)	743, 821, 1562, 1640
XapI	RAATTY	3 cut(s)	729, 1523, 2338
XbaI	TCTAGA	1 cut(s)	2306
XceI	RCATGY	1 cut(s)	243
XhoI	CTCGAG	1 cut(s)	62
XmiI	GTMKAC	2 cut(s)	5, 2022
XmnI	GAANNNNTTC	2 cut(s)	44, 875
XspI	CTAG	3 cut(s)	470, 602, 2307
ZraI	GACGTC	2 cut(s)	334, 1139
ZrmI	AGTACT	2 cut(s)	52, 530
Zsp2I	ATGCAT	1 cut(s)	1277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.