Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014298

Physical Location & Seq

Genomic Coordinates Reverse (-)

3335004 .. 3337446

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCCGGCGTTAACCTACAGCTCCGTCACGCATACTCCATAGCTCAATTCGTTCCAACTGTTTCTTCTCCTCCTCCTCTTCCTACTCAGCGAGTTCGCCTCGGGACTTCACCCTCTCGTGTTCTATTATGCAATCTCCGAGCTAATTCCGCCGCCGCTCCAATCCTGCGAACTACTCGCCGTTCAGTTATTGTTTCGGCGTCTTCCGTATCCTCAGCCGTCGATTCGGATTCGTTGGTGGAAGATCGTGATGACGTGGGGAGGATCCCGTTGCTTGAAGTTAGGGATTTGAGAGCAGTGATTGCTGAATCGAGACAAGAGATACTGAAAGGCGTCAATTTGGTTGTCTACGAAGGAGAGGTTCACGCAGTGATGGGGAAGAACGGTTCAGGAAAGAGCACGTTTTCGAAGGTTCTTGTTGGTCATCCCGATTATGAAGTGACGGGAGGGAGTATTGTGTTTAAAGGGCAGAATCTACTTGATATGGAACCAGAGGATAGATCTCTTGCCGGTCTCTTTATGAGTTTCCAGTCCCCAGTTGAGATCCCTGGTGTTAGCAATATGGATTTCTTGAATATGGCATTCAATGCTCGGAAAAGAAAGCTTGGTCAGCCAGAGCTTGATCCAATCCAGTTCTACAGCCACTTGGTATCAAAACTCGAAGTTGTGAATATGAAGACCGATTTTCTCAACAGAAATGTCAATGAAGGATTTAGTGGTGGTGAAAGGAAACGCAATGAGATTCTACAGTTAGCGGTCCTTGGAGCTGAGTTGGCTATACTGGACGAGATTGATTCAGGGTTGGATGTTGATGCTCTTCAAGATGTGGCAAAGGCGGTGAACGGGCTTTTGACACCAAAAAACTCTGTTCTGATGATAACGCACTACCAACGCCTACTTGACTACATCAAACCAACTCTCATACATATCATGGAGAATGGGAGAATCATTAAAACCGGAGACAACTCCTTGGCCAAACTACTGGAAAAGGAAGGCTACAAAGCGATATCCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0015399 GO:0015405 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

338

Amino Acids

36.93

Weight (kDa)

6.62

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	109 - 263	1e-19	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10670
fragaria_vesca	FvH4_4g11580
malus_domestica	MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis	pycom02g22330
rosa_chinensis	RchiOBHm_Chr6g0244501
rosa_laevigata	RLG00000015353
rosa_multiflora	Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii	Rroxscaffold_7G00215790
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana	Rw6G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	5 cut(s)	150, 153, 156, 755, 836
AclWI	GGATC	4 cut(s)	259, 272, 538, 617
AcoI	YGGCCR	2 cut(s)	3, 972
AcyI	GRCGYC	2 cut(s)	200, 333
AdeI	CACNNNGTG	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	278, 574, 586, 821
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	547
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AloI	GAACNNNNNNTCC	2 cut(s)	370, 402
AluBI	AGCT	6 cut(s)	22, 44, 143, 604, 619, 767
AluI	AGCT	6 cut(s)	22, 44, 143, 604, 619, 767
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	3 cut(s)	307, 518, 954
AlwI	GGATC	4 cut(s)	259, 272, 538, 617
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	3, 972
AspS9I	GGNCC	1 cut(s)	757
AsuHPI	GGTGA	3 cut(s)	102, 734, 850
AsuII	TTCGAA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	757
BalI	TGGCCA	1 cut(s)	974
BamHI	GGATCC	1 cut(s)	264
BauI	CACGAG	1 cut(s)	117
BbsI	GAAGAC	2 cut(s)	195, 683
Bbv12I	GWGCWC	1 cut(s)	401
BbvCI	CCTCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	165, 203
BciT130I	CCWGG	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	307, 518, 954
BfmI	CTRYAG	3 cut(s)	17, 637, 746
BfuI	GTATCC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	2 cut(s)	153, 156
BlsI	GCNGC	2 cut(s)	154, 157
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	757
BmeT110I	CYCGRG	1 cut(s)	101
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	2 cut(s)	266, 489
BmrFI	CCNGG	1 cut(s)	549
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	1 cut(s)	802
BmuI	ACTGGG	1 cut(s)	530
BpiI	GAAGAC	2 cut(s)	195, 683
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
Bpu10I	CCTNAGC	1 cut(s)	214
Bpu14I	TTCGAA	1 cut(s)	407
BsaHI	GRCGYC	2 cut(s)	200, 333
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	4 cut(s)	100, 547, 760, 969
BsaWI	WCCGGW	2 cut(s)	956, 1010
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bse118I	RCCGGY	2 cut(s)	5, 509
Bse1I	ACTGG	5 cut(s)	529, 536, 631, 786, 987
Bse3DI	GCAATG	1 cut(s)	742
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	4 cut(s)	100, 547, 760, 969
BseGI	GGATG	2 cut(s)	424, 811
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	3 cut(s)	101, 228, 759
BseNI	ACTGG	5 cut(s)	529, 536, 631, 786, 987
BseRI	GAGGAG	3 cut(s)	60, 63, 66
BshFI	GGCC	2 cut(s)	5, 974
BsiHKAI	GWGCWC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	4 cut(s)	6, 510, 957, 1011
BslFI	GGGAC	2 cut(s)	118, 517
BsmAI	GTCTC	3 cut(s)	307, 518, 954
BsmFI	GGGAC	2 cut(s)	118, 517
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	2 cut(s)	5, 974
Bso31I	GGTCTC	1 cut(s)	518
BsoBI	CYCGRG	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	5 cut(s)	244, 264, 500, 543, 622
BspACI	CCGC	5 cut(s)	150, 153, 156, 755, 836
BspANI	GGCC	2 cut(s)	5, 974
BspCNI	CTCAG	3 cut(s)	100, 227, 760
BspLI	GGNNCC	2 cut(s)	266, 489
BspPI	GGATC	4 cut(s)	259, 272, 538, 617
BspQI	GCTCTTC	1 cut(s)	822
BspT104I	TTCGAA	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	518
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	742
BsrFI	RCCGGY	2 cut(s)	5, 509
BsrI	ACTGG	5 cut(s)	529, 536, 631, 786, 987
BssAI	RCCGGY	2 cut(s)	5, 509
BssECI	CCNNGG	4 cut(s)	100, 547, 760, 969
BssMI	GATC	5 cut(s)	244, 264, 500, 543, 622
BssNI	GRCGYC	2 cut(s)	200, 333
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	760, 969
Bst2BI	CACGAG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	3 cut(s)	61, 386, 750
Bst6I	CTCTTC	2 cut(s)	84, 822
BstACI	GRCGYC	2 cut(s)	200, 333
BstAPI	GCANNNNNTGC	2 cut(s)	302, 587
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	87, 214, 768
BstF5I	GGATG	2 cut(s)	424, 811
BstKTI	GATC	5 cut(s)	247, 267, 503, 546, 625
BstMAI	GTCTC	3 cut(s)	307, 518, 954
BstMBI	GATC	5 cut(s)	244, 264, 500, 543, 622
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 302, 587, 610, 773
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	3 cut(s)	17, 637, 746
BstV2I	GAAGAC	2 cut(s)	195, 683
BstX2I	RGATCY	3 cut(s)	264, 500, 543
BstXI	CCANNNNNNTGG	1 cut(s)	982
BstYI	RGATCY	3 cut(s)	264, 500, 543
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	5, 974
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	424, 811
BtsI	GCAGTG	2 cut(s)	303, 375
BtsIMutI	CAGTG	2 cut(s)	303, 375
Cac8I	GCNNGC	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	5, 509
Cfr13I	GGNCC	1 cut(s)	757
CseI	GACGC	2 cut(s)	189, 322
CviAII	CATG	1 cut(s)	931
DdeI	CTNAG	3 cut(s)	87, 214, 768
DpnI	GATC	5 cut(s)	246, 266, 502, 545, 624
DpnII	GATC	5 cut(s)	244, 264, 500, 543, 622
DraI	TTTAAA	1 cut(s)	463
DraIII	CACNNNGTG	1 cut(s)	370
EaeI	YGGCCR	2 cut(s)	3, 972
Eam1104I	CTCTTC	2 cut(s)	84, 822
EarI	CTCTTC	2 cut(s)	84, 822
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	760, 969
Eco31I	GGTCTC	1 cut(s)	518
Eco32I	GATATC	1 cut(s)	1008
Eco47I	GGWCC	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	1008
EcoT14I	CCWWGG	2 cut(s)	760, 969
ErhI	CCWWGG	2 cut(s)	760, 969
FaeI	CATG	1 cut(s)	934
FaqI	GGGAC	2 cut(s)	118, 517
FatI	CATG	1 cut(s)	930
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	153, 156
FokI	GGATG	2 cut(s)	411, 818
Fsp4HI	GCNGC	2 cut(s)	153, 156
GluI	GCNGC	2 cut(s)	153, 156
HaeIII	GGCC	2 cut(s)	5, 974
HapII	CCGG	4 cut(s)	6, 510, 957, 1011
HgaI	GACGC	2 cut(s)	189, 322
Hin1I	GRCGYC	2 cut(s)	200, 333
Hin1II	CATG	1 cut(s)	934
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	7 cut(s)	224, 230, 308, 472, 742, 794, 945
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	4 cut(s)	6, 510, 957, 1011
HphI	GGTGA	3 cut(s)	102, 734, 850
Hpy166II	GTNNAC	4 cut(s)	13, 349, 364, 841
Hpy188I	TCNGA	4 cut(s)	140, 229, 594, 873
Hpy188III	TCNNGA	7 cut(s)	103, 248, 312, 390, 428, 571, 821
Hpy8I	GTNNAC	4 cut(s)	13, 349, 364, 841
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	4 cut(s)	347, 403, 701, 986
HpyCH4III	ACNGT	3 cut(s)	61, 386, 750
HpyCH4IV	ACGT	2 cut(s)	255, 401
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 302, 587, 610, 773
HpyF3I	CTNAG	3 cut(s)	87, 214, 768
HpySE526I	ACGT	2 cut(s)	255, 401
Hsp92I	GRCGYC	2 cut(s)	200, 333
Hsp92II	CATG	1 cut(s)	934
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	5 cut(s)	244, 264, 500, 543, 622
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	3 cut(s)	27, 163, 764
LweI	GCATC	1 cut(s)	802
MaeII	ACGT	2 cut(s)	255, 401
MaeIII	GTNAC	2 cut(s)	26, 439
MalI	GATC	5 cut(s)	246, 266, 502, 545, 624
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	5 cut(s)	244, 264, 500, 543, 622
MboII	GAAGA	7 cut(s)	57, 71, 195, 254, 391, 688, 809
MflI	RGATCY	3 cut(s)	264, 500, 543
MhlI	GDGCHC	1 cut(s)	401
MlsI	TGGCCA	1 cut(s)	974
MluCI	AATT	3 cut(s)	47, 145, 337
MluNI	TGGCCA	1 cut(s)	974
MmeI	TCCRAC	2 cut(s)	80, 783
Mox20I	TGGCCA	1 cut(s)	974
MroNI	GCCGGC	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	974
MseI	TTAA	3 cut(s)	12, 462, 951
Msp20I	TGGCCA	1 cut(s)	974
MspI	CCGG	4 cut(s)	6, 510, 957, 1011
MspR9I	CCNGG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	5 cut(s)	149, 302, 587, 610, 773
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	5 cut(s)	244, 264, 500, 543, 622
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	934
NlaIV	GGNNCC	2 cut(s)	266, 489
NmuCI	GTSAC	2 cut(s)	26, 439
NspV	TTCGAA	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	822
PctI	GAATGC	1 cut(s)	581
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	7 cut(s)	224, 230, 308, 472, 742, 794, 945
PkrI	GCNGC	2 cut(s)	154, 157
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	266, 489
PspPI	GGNCC	1 cut(s)	757
PsuI	RGATCY	3 cut(s)	264, 500, 543
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	3 cut(s)	12, 462, 951
SatI	GCNGC	2 cut(s)	153, 156
Sau3AI	GATC	5 cut(s)	244, 264, 500, 543, 622
Sau96I	GGNCC	1 cut(s)	757
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	3 cut(s)	17, 637, 746
SfuI	TTCGAA	1 cut(s)	407
SinI	GGWCC	1 cut(s)	757
Sse9I	AATT	3 cut(s)	47, 145, 337
SsiI	CCGC	5 cut(s)	150, 153, 156, 755, 836
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	2 cut(s)	760, 969
TaaI	ACNGT	3 cut(s)	61, 386, 750
TaiI	ACGT	2 cut(s)	258, 404
TaqI	TCGA	4 cut(s)	222, 311, 407, 660
TaqII	GACCGA	1 cut(s)	695
TasI	AATT	3 cut(s)	47, 145, 337
TauI	GCSGC	2 cut(s)	155, 158
TfiI	GAWTC	7 cut(s)	224, 230, 308, 472, 742, 794, 945
Tru1I	TTAA	3 cut(s)	12, 462, 951
Tru9I	TTAA	3 cut(s)	12, 462, 951
TscAI	CASTG	2 cut(s)	303, 375
TseFI	GTSAC	2 cut(s)	26, 439
Tsp45I	GTSAC	2 cut(s)	26, 439
TspDTI	ATGAA	3 cut(s)	450, 689, 720
TspGWI	ACGGA	2 cut(s)	14, 196
TspRI	CASTG	2 cut(s)	303, 375
VpaK11BI	GGWCC	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.