MD02G1261200.v1.1

ABC transporter I family member 6

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
31508931 .. 31513669
4739 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1261200.v1.1.491

Sequence Viewer

Length: 1308 bp
ATGGCGCTGTCGCGATTCCATTATCCCTGTACTCTTCCCGCCCTACCACCACCATCCCCACTGCAATCTTCTTCTTCTGCTACTTGTGTTGTTTGCAGCTATTCACCCTCCAAGTCCCCAGTATTTACAGGTTCTGCCCTCCGCCCCCTCTGTTGGCCATCATGCCACCGGCAGCTGCGGTCTCTGACGGCGGTGAAGATGAAGGTGACAGGTAGCCTCTCCTCCGCCGTGGAAACTTCAGTTTTCAGCAGTAGAGGAGGGGAAGGAGAGAAGGAGCTGCTACTCCAAGTTGAGGATCTAACGGCCGTGATTGCCGAATCCAAACAGCAGATTCTCAAGGGCGTCAACCTCTCTGTCTACCAAGGAGAGGTTCATGCTATTATGGGAAAGAACGGTTCAGGGAAGAGCACTTTCGCCAAGGTTCTGGCTGGGCATCCGGAATACCAAGTTACCGGAGGTAGTGTTGTGTTTAAAGGGGAAAACTTGCTTGAAATGCCAGCGGAAGACCGGTCACTTGCGGGGCTTTTTATGAGTTTCCAGTCCCCAGTTGAGATCCCTGGTGTCACCAACATTGATTTTCTCAACATGGCGTACAATGCTCGCAGAAAGAAAGTAGGACTGCCCGAGCTTGGACCGATTGAGTTCTATGCTTATATATTTCCTAAACTTGATCTTGTCAACATGAAGACCGACTTCCTTAATCGAAATGTTAACGAAGGCTTCAGTGGAGGTGAAAAGAAGCGCAACGAGATTTTGCAACTGGCGGTAGTATGGCTATCATTCTTAGTTAATATTACTGCTGCTTTTGTAATCTTGATCAAAACTTCATTTGCAAGAAAATGCCTGAATTATGTAAAGCTGTGGGAAGTGGGTTTCTTCCCCGGAGATATTGTCATTCCTTGGAATTCATGTAAGCTGTACGTTTTGGGAGCAGATTTGTCTATTTTGGATGAAATTGATTCTGGGCTGGATGTCGATGCACTTCGAGATGTAGCAAAGGCAGTCAATGGGCATCTGACTCCGACAAATTCTGTATTGATGATTACTCATTATCTACGACTTCTGGAATTTATAAAGCCAACATGTATCCATATTATGGAGGATGGGAAAATTATAAAGACAGGTGACATCTCCTTAGCAGAAGTACTAGAGAAGGAAGGCGCATGGCTCCGGTTTCCTTTCCAAGATGAAAATGTCATGCAAGAGAACACAATGGACACAAGCTCAGATGTAGTATTACTGAAACTGCTTCAGGATTTGATTCGGAGAAAAGCGGGTGCAGGAGTAATGATCTCTTCCCGAAAATAA

Protein Analysis

436

Amino Acids

47.83

Weight (kDa)

7.56

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 112 - 256 4.5e-17 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014298)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1073, 1115
AccB7I CCANNNNNTGG 1 cut(s) 1096
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 13
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 9 cut(s) 39, 142, 178, 191, 225, 500, 518, 764, 1274
AclWI GGATC 2 cut(s) 303, 547
AcoI YGGCCR 2 cut(s) 155, 303
AcsI RAATTY 3 cut(s) 904, 1027, 1067
AcuI CTGAAG 3 cut(s) 222, 706, 1235
AcyI GRCGYC 1 cut(s) 342
AfaI GTAC 4 cut(s) 31, 593, 920, 1146
AfiI CCNNNNNNNGG 5 cut(s) 153, 292, 367, 629, 1096
AflIII ACRYGT 1 cut(s) 1082
AgeI ACCGGT 1 cut(s) 507
AgsI TTSAA 1 cut(s) 491
AjnI CCWGG 1 cut(s) 556
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 7 cut(s) 99, 175, 277, 628, 859, 916, 1224
AluI AGCT 7 cut(s) 99, 175, 277, 628, 859, 916, 1224
Alw21I GWGCWC 1 cut(s) 410
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 2 cut(s) 303, 547
AlwNI CAGNNNCTG 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 623
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 2 cut(s) 155, 303
ApeKI GCWGC 5 cut(s) 96, 172, 175, 277, 800
ApoI RAATTY 3 cut(s) 904, 1027, 1067
AsiGI ACCGGT 1 cut(s) 507
AspLEI GCGC 3 cut(s) 7, 744, 1163
AspS9I GGNCC 1 cut(s) 632
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 6 cut(s) 96, 205, 217, 556, 743, 1136
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 1 cut(s) 632
BalI TGGCCA 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 510, 692
Bbv12I GWGCWC 1 cut(s) 410
BbvI GCAGC 5 cut(s) 108, 162, 184, 264, 787
BccI CCATC 3 cut(s) 61, 166, 1097
BceAI ACGGC 4 cut(s) 204, 212, 290, 318
BciT130I CCWGG 1 cut(s) 558
BciVI GTATCC 1 cut(s) 1097
BclI TGATCA 1 cut(s) 816
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 1148
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 1097
BisI GCNGC 5 cut(s) 97, 173, 176, 278, 801
BlsI GCNGC 5 cut(s) 98, 174, 177, 279, 802
BmcAI AGTACT 1 cut(s) 1146
Bme1390I CCNGG 2 cut(s) 558, 882
Bme18I GGWCC 1 cut(s) 632
BmeT110I CYCGRG 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 632
BmiI GGNNCC 1 cut(s) 1169
BmrFI CCNGG 2 cut(s) 558, 882
BmrI ACTGGG 2 cut(s) 113, 539
BmsI GCATC 3 cut(s) 442, 967, 1021
BmuI ACTGGG 2 cut(s) 113, 539
BpiI GAAGAC 2 cut(s) 510, 692
Bpu10I CCTNAGC 1 cut(s) 1135
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 882
BsaHI GRCGYC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 6 cut(s) 228, 361, 417, 556, 880, 899
BsaWI WCCGGW 4 cut(s) 436, 452, 507, 1170
BsaXI ACNNNNNCTCC 4 cut(s) 447, 477, 876, 906
Bsc4I CCNNNNNNNGG 5 cut(s) 153, 292, 367, 629, 1096
Bse118I RCCGGY 2 cut(s) 168, 507
Bse1I ACTGG 4 cut(s) 119, 538, 545, 765
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 6 cut(s) 228, 361, 417, 556, 880, 899
BseGI GGATG 5 cut(s) 53, 433, 955, 976, 1108
BseLI CCNNNNNNNGG 5 cut(s) 153, 292, 367, 629, 1096
BseMII CTCAG 1 cut(s) 1239
BseNI ACTGG 4 cut(s) 119, 538, 545, 765
BseRI GAGGAG 2 cut(s) 211, 270
BseX3I CGGCCG 1 cut(s) 303
BseXI GCAGC 5 cut(s) 108, 162, 184, 264, 787
BseYI CCCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 1299
Bsh1236I CGCG 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 2 cut(s) 157, 305
BshTI ACCGGT 1 cut(s) 507
BsiEI CGRYCG 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 410
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 6 cut(s) 169, 437, 453, 508, 882, 1171
BslFI GGGAC 2 cut(s) 100, 526
BslI CCNNNNNNNGG 5 cut(s) 153, 292, 367, 629, 1096
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 2 cut(s) 100, 526
BsnI GGCC 2 cut(s) 157, 305
Bso31I GGTCTC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 410
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 5 cut(s) 295, 552, 670, 816, 1290
Bsp68I TCGCGA 1 cut(s) 13
BspACI CCGC 9 cut(s) 39, 142, 178, 191, 225, 500, 518, 764, 1274
BspANI GGCC 2 cut(s) 157, 305
BspCNI CTCAG 1 cut(s) 1238
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 1169
BspPI GGATC 2 cut(s) 303, 547
BspQI GCTCTTC 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 186
BsrFI RCCGGY 2 cut(s) 168, 507
BsrI ACTGG 4 cut(s) 119, 538, 545, 765
BssAI RCCGGY 2 cut(s) 168, 507
BssECI CCNNGG 6 cut(s) 228, 361, 417, 556, 880, 899
BssMI GATC 5 cut(s) 295, 552, 670, 816, 1290
BssNI GRCGYC 1 cut(s) 342
BssT1I CCWWGG 3 cut(s) 361, 417, 899
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 1 cut(s) 395
Bst6I CTCTTC 3 cut(s) 39, 398, 1300
BstACI GRCGYC 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 498, 601
BstDEI CTNAG 3 cut(s) 784, 1135, 1225
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 5 cut(s) 53, 433, 955, 976, 1108
BstFNI CGCG 1 cut(s) 13
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 744, 1163
BstKTI GATC 5 cut(s) 298, 555, 673, 819, 1293
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 5 cut(s) 295, 552, 670, 816, 1290
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 3 cut(s) 311, 493, 596
BstNI CCWGG 1 cut(s) 558
BstNSI RCATGY 1 cut(s) 1086
BstSCI CCNGG 2 cut(s) 556, 880
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 5 cut(s) 108, 162, 184, 264, 787
BstV2I GAAGAC 2 cut(s) 510, 692
BstX2I RGATCY 2 cut(s) 295, 552
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 2 cut(s) 295, 552
BstZI CGGCCG 1 cut(s) 303
BsuI GTATCC 1 cut(s) 1097
BsuRI GGCC 2 cut(s) 157, 305
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 5 cut(s) 53, 433, 955, 976, 1108
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 730
BtuMI TCGCGA 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 498, 601
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 3 cut(s) 7, 744, 1163
Cfr10I RCCGGY 2 cut(s) 168, 507
Cfr13I GGNCC 1 cut(s) 632
CseI GACGC 1 cut(s) 331
Csp6I GTAC 4 cut(s) 30, 592, 919, 1145
CspAI ACCGGT 1 cut(s) 507
CviAII CATG 8 cut(s) 162, 374, 586, 682, 909, 1083, 1164, 1198
CviQI GTAC 4 cut(s) 30, 592, 919, 1145
DdeI CTNAG 3 cut(s) 784, 1135, 1225
DpnI GATC 5 cut(s) 297, 554, 672, 818, 1292
DpnII GATC 5 cut(s) 295, 552, 670, 816, 1290
DraI TTTAAA 1 cut(s) 472
EaeI YGGCCR 2 cut(s) 155, 303
EagI CGGCCG 1 cut(s) 303
Eam1104I CTCTTC 3 cut(s) 39, 398, 1300
EarI CTCTTC 3 cut(s) 39, 398, 1300
EciI GGCGGA 2 cut(s) 131, 214
EclXI CGGCCG 1 cut(s) 303
Eco130I CCWWGG 3 cut(s) 361, 417, 899
Eco31I GGTCTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 632
Eco52I CGGCCG 1 cut(s) 303
Eco57I CTGAAG 3 cut(s) 222, 706, 1235
Eco88I CYCGRG 1 cut(s) 623
EcoRI GAATTC 1 cut(s) 904
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 3 cut(s) 361, 417, 899
ErhI CCWWGG 3 cut(s) 361, 417, 899
FaeI CATG 8 cut(s) 165, 377, 589, 685, 912, 1086, 1167, 1201
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FaqI GGGAC 2 cut(s) 100, 526
FatI CATG 8 cut(s) 161, 373, 585, 681, 908, 1082, 1163, 1197
FauI CCCGC 3 cut(s) 46, 511, 1267
FbaI TGATCA 1 cut(s) 816
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 5 cut(s) 97, 173, 176, 278, 801
FokI GGATG 5 cut(s) 40, 420, 962, 983, 1115
Fsp4HI GCNGC 5 cut(s) 97, 173, 176, 278, 801
FspBI CTAG 1 cut(s) 1148
GlaI GCGC 3 cut(s) 6, 743, 1162
GluI GCNGC 5 cut(s) 97, 173, 176, 278, 801
GsaI CCCAGC 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 157, 305
HapII CCGG 6 cut(s) 169, 437, 453, 508, 882, 1171
HgaI GACGC 1 cut(s) 331
HhaI GCGC 3 cut(s) 7, 744, 1163
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 8 cut(s) 165, 377, 589, 685, 912, 1086, 1167, 1201
Hin6I GCGC 3 cut(s) 5, 742, 1161
HinP1I GCGC 3 cut(s) 5, 742, 1161
HincII GTYRAC 3 cut(s) 346, 679, 712
HindII GTYRAC 3 cut(s) 346, 679, 712
HinfI GANTC 6 cut(s) 15, 317, 331, 959, 1018, 1261
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 6 cut(s) 169, 437, 453, 508, 882, 1171
HphI GGTGA 6 cut(s) 96, 205, 217, 556, 743, 1136
Hpy166II GTNNAC 4 cut(s) 346, 358, 679, 712
Hpy188I TCNGA 5 cut(s) 186, 1017, 1023, 1228, 1266
Hpy188III TCNNGA 7 cut(s) 12, 437, 814, 986, 1064, 1253, 1299
Hpy8I GTNNAC 4 cut(s) 346, 358, 679, 712
HpyAV CCTTC 6 cut(s) 196, 257, 265, 710, 1147, 1151
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 921
HpyCH4V TGCA 7 cut(s) 64, 96, 757, 833, 980, 1201, 1280
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 493, 596
HpyF3I CTNAG 3 cut(s) 784, 1135, 1225
HpySE526I ACGT 1 cut(s) 921
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 8 cut(s) 165, 377, 589, 685, 912, 1086, 1167, 1201
HspAI GCGC 3 cut(s) 5, 742, 1161
Kpn2I TCCGGA 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 816
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 5 cut(s) 295, 552, 670, 816, 1290
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 3 cut(s) 274, 929, 1173
Lsp1109I GCAGC 5 cut(s) 108, 162, 184, 264, 787
LweI GCATC 3 cut(s) 442, 967, 1021
MaeI CTAG 1 cut(s) 1148
MaeII ACGT 1 cut(s) 921
MaeIII GTNAC 5 cut(s) 205, 448, 510, 562, 1124
MalI GATC 5 cut(s) 297, 554, 672, 818, 1292
MboI GATC 5 cut(s) 295, 552, 670, 816, 1290
MflI RGATCY 2 cut(s) 295, 552
MhlI GDGCHC 1 cut(s) 410
MlsI TGGCCA 1 cut(s) 157
MluCI AATT 6 cut(s) 847, 904, 954, 1027, 1067, 1110
MluNI TGGCCA 1 cut(s) 157
MlyI GAGTC 1 cut(s) 1012
MmeI TCCRAC 1 cut(s) 1046
Mox20I TGGCCA 1 cut(s) 157
MroI TCCGGA 1 cut(s) 436
MscI TGGCCA 1 cut(s) 157
MseI TTAA 4 cut(s) 471, 699, 711, 789
Msp20I TGGCCA 1 cut(s) 157
MspA1I CMGCKG 2 cut(s) 175, 500
MspI CCGG 6 cut(s) 169, 437, 453, 508, 882, 1171
MspR9I CCNGG 2 cut(s) 558, 882
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 311, 493, 596
NciI CCSGG 1 cut(s) 882
NdeII GATC 5 cut(s) 295, 552, 670, 816, 1290
NlaIII CATG 8 cut(s) 165, 377, 589, 685, 912, 1086, 1167, 1201
NlaIV GGNNCC 1 cut(s) 1169
NmuCI GTSAC 4 cut(s) 205, 510, 562, 1124
NruI TCGCGA 1 cut(s) 13
NspI RCATGY 1 cut(s) 1086
PciI ACATGT 1 cut(s) 1082
PciSI GCTCTTC 1 cut(s) 398
PfeI GAWTC 5 cut(s) 15, 317, 331, 959, 1261
PflMI CCANNNNNTGG 1 cut(s) 1096
PinAI ACCGGT 1 cut(s) 507
PkrI GCNGC 5 cut(s) 98, 174, 177, 279, 802
PleI GAGTC 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 1012
PscI ACATGT 1 cut(s) 1082
PsiI TTATAA 2 cut(s) 1073, 1115
Psp6I CCWGG 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 1 cut(s) 1169
PspPI GGNCC 1 cut(s) 632
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 295, 552
PvuII CAGCTG 1 cut(s) 175
RruI TCGCGA 1 cut(s) 13
RsaI GTAC 4 cut(s) 31, 593, 920, 1146
RsaNI GTAC 4 cut(s) 30, 592, 919, 1145
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 4 cut(s) 471, 699, 711, 789
SatI GCNGC 5 cut(s) 97, 173, 176, 278, 801
Sau3AI GATC 5 cut(s) 295, 552, 670, 816, 1290
Sau96I GGNCC 1 cut(s) 632
ScaI AGTACT 1 cut(s) 1146
SchI GAGTC 1 cut(s) 1012
ScrFI CCNGG 2 cut(s) 558, 882
SduI GDGCHC 1 cut(s) 410
SfaNI GCATC 3 cut(s) 442, 967, 1021
SinI GGWCC 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 6 cut(s) 847, 904, 954, 1027, 1067, 1110
SsiI CCGC 9 cut(s) 39, 142, 178, 191, 225, 500, 518, 764, 1274
SspI AATATT 1 cut(s) 793
SspMI CTAG 1 cut(s) 1148
StyD4I CCNGG 2 cut(s) 556, 880
StyI CCWWGG 3 cut(s) 361, 417, 899
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 924
TaqI TCGA 3 cut(s) 703, 975, 985
TaqII GACCGA 2 cut(s) 649, 704
TasI AATT 6 cut(s) 847, 904, 954, 1027, 1067, 1110
TatI WGTACW 2 cut(s) 29, 1144
TfiI GAWTC 5 cut(s) 15, 317, 331, 959, 1261
Tru1I TTAA 4 cut(s) 471, 699, 711, 789
Tru9I TTAA 4 cut(s) 471, 699, 711, 789
TscAI CASTG 2 cut(s) 66, 730
TseFI GTSAC 4 cut(s) 205, 510, 562, 1124
TseI GCWGC 5 cut(s) 96, 172, 175, 277, 800
Tsp45I GTSAC 4 cut(s) 205, 510, 562, 1124
TspDTI ATGAA 7 cut(s) 215, 362, 698, 816, 897, 966, 1203
TspRI CASTG 2 cut(s) 66, 730
Van91I CCANNNNNTGG 1 cut(s) 1096
VpaK11BI GGWCC 1 cut(s) 632
XapI RAATTY 3 cut(s) 904, 1027, 1067
XceI RCATGY 1 cut(s) 1086
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 1148
ZrmI AGTACT 1 cut(s) 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.