Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014298

Physical Location & Seq

Genomic Coordinates Reverse (-)

2835062 .. 2838295

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG024600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTGAAACTTCAATTTTCTGAATTTACTGTTAAAAAGAGTGAAATTCAGCTGTTCATATTCACCACTCTTTTGACACAAAGTTACCCCACGCCGGCAAAAAGCCCGACTAAACTAACCTCCCTCCCTCCCTATCTCACTCTCTCACTTCAAATTCAACACCACCACCACGCAGCTCTCTCTCCGATGGCCCTCTCGCTATTTCACCACCCATCTCTCACTCTCCCTTCACCACCACCACAGCCCTCTCCTCCTTCTCTCCGACCTTCACCCTCCAATTCCCTCCAATTTACACTCCCTGCCCCTCGCCCCCTCCTCCTCCTCCGCTCTTCCCGCCGAAACCGCCGCCACTCCTCACTCCGCGCCGGCCTCTCCTCCGCCGTTGATTCTCCGCCGCAGACTTCCGGCGGCCAACCCGAGAAGAAGCTCATCCTCCAAGTCAGAGACCTAACCGCCGTGATTGCCGAATCGAAGCAGCAGATTCTCAAAGGCGTTAACCTCACCGTCTACGAAGGTGAGGTTCACGCCGTCATGGGCAAGAACGGCTCCGGCAAAAGCACCTTCGCCAAGGTTTTGGTGGGGCATCCGGATTACGAAGTCACTGGAGGCAGTGTGGTGTTTAAAGGGCAAGACTTGCTGGAAATGGAAGCGGATGAGAGGTCCCTCGCCGGACTTTTTATGAGTTTTCAGTCGCCGGTTGAAATTCCGGGTGTGAGCAATATCAATTTTCTTCGTATGGCGTACAATGCTAAGAGAGAGAAGCTTGGATTGCCTGAGCTTGGAGTATTTGAGTTCTATGCTTATTTGTATCCGAAACTTGAACTTGTGAACATGAAGACGGATTTTCTTGATAGAAATGTTAATGAAGGCTTTAGCGGTGGTGAAAAGAAGCGCAATGAGATTTTACAATTGGCGGTTTTGGGGGCAGAATTGGCTTTATTGGATGAAATTGATTCTGGCCTGGATGTTGATGCGTTCCAAGATGTAGCCAAGGCAGTGAATGGGCTTCTGACTCCAACAAATTCTGTGTTGCTAATTACTCATTATTTACGACTCCTACAATTTATAAAGCCAACATGCATCCACATTATGGTAAGTCAGTGGGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0015399 GO:0015405 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

370

Amino Acids

40.84

Weight (kDa)

8.77

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	162 - 316	4.9e-20	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10670
fragaria_vesca	FvH4_4g11580
malus_domestica	MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis	pycom02g22330
rosa_chinensis	RchiOBHm_Chr6g0244501
rosa_laevigata	RLG00000015353
rosa_multiflora	Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii	Rroxscaffold_7G00215790
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana	Rw6G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1067
AccB7I	CCANNNNNTGG	1 cut(s)	1090
AccBSI	CCGCTC	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	1 cut(s)	363
AccIII	TCCGGA	1 cut(s)	586
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	5 cut(s)	23, 45, 153, 702, 1021
AfaI	GTAC	1 cut(s)	743
AfiI	CCNNNNNNNGG	3 cut(s)	94, 779, 1090
AgsI	TTSAA	5 cut(s)	14, 152, 158, 701, 821
AjnI	CCWGG	1 cut(s)	960
AluBI	AGCT	5 cut(s)	52, 176, 427, 763, 778
AluI	AGCT	5 cut(s)	52, 176, 427, 763, 778
Alw26I	GTCTC	2 cut(s)	438, 1100
Ama87I	CYCGRG	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	586
AoxI	GGCC	4 cut(s)	189, 367, 409, 958
ApeKI	GCWGC	2 cut(s)	173, 475
ApoI	RAATTY	5 cut(s)	23, 45, 153, 702, 1021
AspLEI	GCGC	2 cut(s)	365, 894
AspS9I	GGNCC	2 cut(s)	190, 660
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	8 cut(s)	16, 55, 197, 222, 261, 493, 527, 893
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	842
BbvI	GCAGC	2 cut(s)	185, 487
BccI	CCATC	2 cut(s)	181, 220
BceAI	ACGGC	4 cut(s)	365, 440, 512, 559
BciT130I	CCWGG	1 cut(s)	962
BciVI	GTATCC	1 cut(s)	819
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	438, 1100
BfuI	GTATCC	1 cut(s)	819
BisI	GCNGC	5 cut(s)	174, 346, 395, 409, 476
BlsI	GCNGC	5 cut(s)	175, 347, 396, 410, 477
Bme1390I	CCNGG	2 cut(s)	708, 962
Bme18I	GGWCC	1 cut(s)	660
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	190, 660
BmiI	GGNNCC	2 cut(s)	547, 662
BmrFI	CCNGG	2 cut(s)	708, 962
BmsI	GCATC	3 cut(s)	592, 961, 1089
BpiI	GAAGAC	1 cut(s)	842
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	567, 990
BsaWI	WCCGGW	1 cut(s)	586
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 779, 1090
Bse118I	RCCGGY	3 cut(s)	94, 365, 694
Bse1I	ACTGG	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	901
BseAI	TCCGGA	1 cut(s)	586
BseBI	CCWGG	1 cut(s)	962
BseDI	CCNNGG	2 cut(s)	567, 990
BseGI	GGATG	6 cut(s)	429, 583, 658, 949, 970, 1080
BseLI	CCNNNNNNNGG	3 cut(s)	94, 779, 1090
BseMI	GCAATG	1 cut(s)	901
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	6 cut(s)	240, 305, 308, 311, 343, 364
BseXI	GCAGC	2 cut(s)	185, 487
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	4 cut(s)	191, 369, 411, 960
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	8 cut(s)	95, 366, 405, 549, 587, 669, 695, 707
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	3 cut(s)	94, 779, 1090
BsmAI	GTCTC	2 cut(s)	438, 1100
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	4 cut(s)	191, 369, 411, 960
Bso31I	GGTCTC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	416
Bsp13I	TCCGGA	1 cut(s)	586
BspANI	GGCC	4 cut(s)	191, 369, 411, 960
BspCNI	CTCAG	1 cut(s)	766
BspEI	TCCGGA	1 cut(s)	586
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	547, 662
BspQI	GCTCTTC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	438
BsrBI	CCGCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	901
BsrFI	RCCGGY	3 cut(s)	94, 365, 694
BsrI	ACTGG	1 cut(s)	607
BssAI	RCCGGY	3 cut(s)	94, 365, 694
BssECI	CCNNGG	2 cut(s)	567, 990
BssT1I	CCWWGG	2 cut(s)	567, 990
Bst2UI	CCWGG	1 cut(s)	962
Bst4CI	ACNGT	2 cut(s)	31, 505
Bst6I	CTCTTC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	96, 367
BstDEI	CTNAG	2 cut(s)	750, 774
BstF5I	GGATG	6 cut(s)	429, 583, 658, 949, 970, 1080
BstFNI	CGCG	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	365, 894
BstMAI	GTCTC	2 cut(s)	438, 1100
BstMWI	GCNNNNNNNGC	8 cut(s)	333, 342, 461, 543, 634, 746, 769, 932
BstNI	CCWGG	1 cut(s)	962
BstNSI	RCATGY	1 cut(s)	1080
BstSCI	CCNGG	2 cut(s)	706, 960
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	185, 487
BstV2I	GAAGAC	1 cut(s)	842
BstXI	CCANNNNNNTGG	1 cut(s)	574
BsuI	GTATCC	1 cut(s)	819
BsuRI	GGCC	4 cut(s)	191, 369, 411, 960
BtsCI	GGATG	6 cut(s)	429, 583, 658, 949, 970, 1080
BtsI	GCAGTG	2 cut(s)	616, 1002
BtsIMutI	CAGTG	4 cut(s)	600, 616, 1002, 1106
Cac8I	GCNNGC	2 cut(s)	96, 367
CfoI	GCGC	2 cut(s)	365, 894
Cfr10I	RCCGGY	3 cut(s)	94, 365, 694
Cfr13I	GGNCC	2 cut(s)	190, 660
Csp6I	GTAC	1 cut(s)	742
CviAII	CATG	4 cut(s)	532, 832, 1077, 1110
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	2 cut(s)	750, 774
DraI	TTTAAA	1 cut(s)	622
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
EciI	GGCGGA	2 cut(s)	367, 381
Eco130I	CCWWGG	2 cut(s)	567, 990
Eco31I	GGTCTC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	660
Eco88I	CYCGRG	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	960
EcoT14I	CCWWGG	2 cut(s)	567, 990
EcoT22I	ATGCAT	1 cut(s)	1082
ErhI	CCWWGG	2 cut(s)	567, 990
FaeI	CATG	4 cut(s)	535, 835, 1080, 1113
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	4 cut(s)	531, 831, 1076, 1109
FauI	CCCGC	1 cut(s)	341
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	5 cut(s)	174, 346, 395, 409, 476
FokI	GGATG	6 cut(s)	416, 570, 665, 956, 977, 1067
Fsp4HI	GCNGC	5 cut(s)	174, 346, 395, 409, 476
GlaI	GCGC	2 cut(s)	364, 893
GluI	GCNGC	5 cut(s)	174, 346, 395, 409, 476
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	4 cut(s)	191, 369, 411, 960
HapII	CCGG	8 cut(s)	95, 366, 405, 549, 587, 669, 695, 707
HhaI	GCGC	2 cut(s)	365, 894
Hin1II	CATG	4 cut(s)	535, 835, 1080, 1113
Hin6I	GCGC	2 cut(s)	363, 892
HinP1I	GCGC	2 cut(s)	363, 892
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	6 cut(s)	386, 467, 481, 953, 1012, 1053
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	8 cut(s)	95, 366, 405, 549, 587, 669, 695, 707
HphI	GGTGA	8 cut(s)	16, 55, 197, 222, 261, 493, 527, 893
Hpy166II	GTNNAC	4 cut(s)	496, 508, 523, 829
Hpy188I	TCNGA	6 cut(s)	22, 186, 263, 443, 813, 1011
Hpy188III	TCNNGA	2 cut(s)	587, 848
Hpy8I	GTNNAC	4 cut(s)	496, 508, 523, 829
HpyAV	CCTTC	6 cut(s)	237, 264, 276, 506, 571, 860
HpyCH4III	ACNGT	2 cut(s)	31, 505
HpyCH4V	TGCA	1 cut(s)	1080
HpyF10VI	GCNNNNNNNGC	8 cut(s)	333, 342, 461, 543, 634, 746, 769, 932
HpyF3I	CTNAG	2 cut(s)	750, 774
Hsp92II	CATG	4 cut(s)	535, 835, 1080, 1113
HspAI	GCGC	2 cut(s)	363, 892
Kpn2I	TCCGGA	1 cut(s)	586
KroI	GCCGGC	2 cut(s)	94, 365
KroNI	GCCGGC	2 cut(s)	96, 367
KspAI	GTTAAC	1 cut(s)	496
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	2 cut(s)	185, 487
LweI	GCATC	3 cut(s)	592, 961, 1089
MaeIII	GTNAC	2 cut(s)	83, 598
MbiI	CCGCTC	1 cut(s)	327
MboII	GAAGA	4 cut(s)	321, 433, 722, 847
MfeI	CAATTG	1 cut(s)	908
MlyI	GAGTC	2 cut(s)	1006, 1047
MmeI	TCCRAC	2 cut(s)	286, 1040
Mph1103I	ATGCAT	1 cut(s)	1082
MroI	TCCGGA	1 cut(s)	586
MroNI	GCCGGC	2 cut(s)	94, 365
MseI	TTAA	4 cut(s)	33, 495, 621, 861
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	8 cut(s)	95, 366, 405, 549, 587, 669, 695, 707
MspR9I	CCNGG	2 cut(s)	708, 962
MunI	CAATTG	1 cut(s)	908
MvaI	CCWGG	1 cut(s)	962
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	8 cut(s)	333, 342, 461, 543, 634, 746, 769, 932
NaeI	GCCGGC	2 cut(s)	96, 367
NciI	CCSGG	1 cut(s)	708
NgoMIV	GCCGGC	2 cut(s)	94, 365
NlaIII	CATG	4 cut(s)	535, 835, 1080, 1113
NlaIV	GGNNCC	2 cut(s)	547, 662
NmuCI	GTSAC	1 cut(s)	598
NsiI	ATGCAT	1 cut(s)	1082
NspI	RCATGY	1 cut(s)	1080
PciSI	GCTCTTC	1 cut(s)	334
PdiI	GCCGGC	2 cut(s)	96, 367
PfeI	GAWTC	4 cut(s)	386, 467, 481, 953
PflMI	CCANNNNNTGG	1 cut(s)	1090
PkrI	GCNGC	5 cut(s)	175, 347, 396, 410, 477
PleI	GAGTC	2 cut(s)	1006, 1047
PpsI	GAGTC	2 cut(s)	1006, 1047
PpuMI	RGGWCCY	1 cut(s)	660
PsiI	TTATAA	1 cut(s)	1067
Psp5II	RGGWCCY	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	960
PspGI	CCWGG	1 cut(s)	960
PspN4I	GGNNCC	2 cut(s)	547, 662
PspPI	GGNCC	2 cut(s)	190, 660
PspPPI	RGGWCCY	1 cut(s)	660
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	4 cut(s)	33, 495, 621, 861
SatI	GCNGC	5 cut(s)	174, 346, 395, 409, 476
Sau96I	GGNCC	2 cut(s)	190, 660
SchI	GAGTC	2 cut(s)	1006, 1047
ScrFI	CCNGG	2 cut(s)	708, 962
SfaNI	GCATC	3 cut(s)	592, 961, 1089
SinI	GGWCC	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	706, 960
StyI	CCWWGG	2 cut(s)	567, 990
TaaI	ACNGT	2 cut(s)	31, 505
TaqI	TCGA	1 cut(s)	470
TauI	GCSGC	3 cut(s)	348, 397, 411
TfiI	GAWTC	4 cut(s)	386, 467, 481, 953
Tru1I	TTAA	4 cut(s)	33, 495, 621, 861
Tru9I	TTAA	4 cut(s)	33, 495, 621, 861
TscAI	CASTG	4 cut(s)	607, 616, 1002, 1106
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	2 cut(s)	173, 475
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	46, 848, 879, 960
TspGWI	ACGGA	1 cut(s)	854
TspRI	CASTG	4 cut(s)	607, 616, 1002, 1106
Van91I	CCANNNNNTGG	1 cut(s)	1090
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	5 cut(s)	23, 45, 153, 702, 1021
XceI	RCATGY	1 cut(s)	1080
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	507
Zsp2I	ATGCAT	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.