Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8367795.1

Orthogroup ID

OG0014298

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1109

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8367795.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

tctccgccgcagacttccggcggccaacccgagaagaagctcatcctccaagtcagagacctaaccgccgtgattgccgaatcgaagcagcagattctcaaaggcgttaacctcaccgtctacgaaggtgaggttcacgccgtcatgggcaagaacggctccggcaaaagcaccttcgccaaggttttggtggggcatccggattacgaagtcaccggaggcagcgtggtgtttaaagggcaagacttgctggaaatggaagcggatgagaggtccctcgccggactttttatgagttttcagtcgccggttgaaattccgggtgtgagcaatatcaattttcttcgtatggcgtacaatgctaagagagagaagcttggattgcctgagcttggagtatttgagttctatgcttatttgtatccgaaacttgaacttgtgaacatgaagacggattttcttgatagaaatgttaatgaaggctttagcggtggtgaaaagaagcgcaatgagattttacaattggcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0015399 GO:0015405 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

176

Amino Acids

19.4

Weight (kDa)

5.78

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10670
fragaria_vesca	FvH4_4g11580
malus_domestica	MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis	pycom02g22330
rosa_chinensis	RchiOBHm_Chr6g0244501
rosa_laevigata	RLG00000015353
rosa_multiflora	Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii	Rroxscaffold_7G00215790
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana	Rw6G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	6 cut(s)	5, 8, 21, 66, 263, 489
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	315
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	2 cut(s)	314, 434
AluBI	AGCT	3 cut(s)	40, 376, 391
AluI	AGCT	3 cut(s)	40, 376, 391
Alw26I	GTCTC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	88, 222
ApoI	RAATTY	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	4 cut(s)	106, 140, 205, 506
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	100, 234
BceAI	ACGGC	3 cut(s)	53, 125, 172
BciVI	GTATCC	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	4 cut(s)	8, 22, 89, 223
BlsI	GCNGC	4 cut(s)	9, 23, 90, 224
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	160, 275
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	2 cut(s)	199, 215
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse118I	RCCGGY	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	514
BseAI	TCCGGA	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	42, 196, 271
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	378
BseXI	GCAGC	2 cut(s)	100, 234
BshFI	GGCC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	7 cut(s)	18, 162, 200, 216, 282, 308, 320
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	199
BspACI	CCGC	6 cut(s)	5, 8, 21, 66, 263, 489
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	379
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	160, 275
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	363, 387
BstF5I	GGATG	3 cut(s)	42, 196, 271
BstHHI	GCGC	1 cut(s)	507
BstMAI	GTCTC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 156, 247, 359, 382
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	100, 234
BstV2I	GAAGAC	1 cut(s)	455
BstXI	CCANNNNNNTGG	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	42, 196, 271
CfoI	GCGC	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	145, 445
CviJI	RGCY	6 cut(s)	24, 40, 159, 376, 391, 483
CviKI_1	RGCY	6 cut(s)	24, 40, 159, 376, 391, 483
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	363, 387
DraI	TTTAAA	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	148, 448
FaiI	YATR	5 cut(s)	146, 293, 350, 411, 446
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	2 cut(s)	144, 444
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	4 cut(s)	8, 22, 89, 223
FokI	GGATG	3 cut(s)	29, 183, 278
Fsp4HI	GCNGC	4 cut(s)	8, 22, 89, 223
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	4 cut(s)	8, 22, 89, 223
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	7 cut(s)	18, 162, 200, 216, 282, 308, 320
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	2 cut(s)	148, 448
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	80, 94
HpaI	GTTAAC	1 cut(s)	109
HpaII	CCGG	7 cut(s)	18, 162, 200, 216, 282, 308, 320
HphI	GGTGA	4 cut(s)	106, 140, 205, 506
Hpy166II	GTNNAC	4 cut(s)	109, 121, 136, 442
Hpy188I	TCNGA	2 cut(s)	56, 426
Hpy188III	TCNNGA	2 cut(s)	200, 461
Hpy8I	GTNNAC	4 cut(s)	109, 121, 136, 442
HpyAV	CCTTC	3 cut(s)	119, 184, 473
HpyCH4III	ACNGT	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 156, 247, 359, 382
HpyF3I	CTNAG	2 cut(s)	363, 387
Hsp92II	CATG	2 cut(s)	148, 448
HspAI	GCGC	1 cut(s)	505
Kpn2I	TCCGGA	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	9 cut(s)	31, 175, 213, 229, 236, 295, 321, 333, 399
Lsp1109I	GCAGC	2 cut(s)	100, 234
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	46, 335, 460
MfeI	CAATTG	1 cut(s)	521
MluCI	AATT	3 cut(s)	315, 337, 521
MnlI	CCTC	6 cut(s)	56, 122, 124, 212, 264, 287
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	3 cut(s)	108, 234, 474
MspI	CCGG	7 cut(s)	18, 162, 200, 216, 282, 308, 320
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	521
MwoI	GCNNNNNNNGC	5 cut(s)	74, 156, 247, 359, 382
NciI	CCSGG	1 cut(s)	321
NlaIII	CATG	2 cut(s)	148, 448
NlaIV	GGNNCC	2 cut(s)	160, 275
NmuCI	GTSAC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	80, 94
PkrI	GCNGC	4 cut(s)	9, 23, 90, 224
PpuMI	RGGWCCY	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	160, 275
PspPI	GGNCC	1 cut(s)	273
PspPPI	RGGWCCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	3 cut(s)	108, 234, 474
SatI	GCNGC	4 cut(s)	8, 22, 89, 223
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	321
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	273
Sse9I	AATT	3 cut(s)	315, 337, 521
SsiI	CCGC	6 cut(s)	5, 8, 21, 66, 263, 489
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	315, 337, 521
TauI	GCSGC	2 cut(s)	10, 24
TfiI	GAWTC	2 cut(s)	80, 94
Tru1I	TTAA	3 cut(s)	108, 234, 474
Tru9I	TTAA	3 cut(s)	108, 234, 474
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	88, 222
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	461, 492
TspGWI	ACGGA	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.