Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014298

Physical Location & Seq

Genomic Coordinates Reverse (-)

2977429 .. 2980698

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG019600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCCCTCTCGCTATTTCACTACCCATCTCTCACTCTCCCTTCATCACCACCACCACAGTCCTCTCCTCCTTCTCTCCGACCTTCACCCTCCAATTCCCTCCAATTTACACTCCCTGCCCCTCGCCCCCTCCTCCTCCTCCGCTCTTCCCGCCCAAACTGCCGCCACTCCTCACTCCGCGCCGGCCTCTCCTCCGCCGTTGATTCTCCGCCGCAGACTTCCGGCGGCCAACCCGAGAAGAAGCTCATCCTCCAAGTCAGAGACCTAACCGCCGTGATTGCCGAATCGAAGCAGCAGATTCTCAAAGGCGTTAACCTCACCGTCTACGAAGGTGAGGTTCACGCCGTCATGGGCAAGAACGGCTCCGGCAAAAGCACCTTCGCCAAGGTTTTGGTGGGGCATCCGGATTACGAAGTCACCGGAGGCAGTGTGGTGTTTAAAGGGCAAGACTTGCTGGAAATGGAAGCGGATGAGAGGTCCCTCGCCGGACTTTTTATGAGTTTTCAGTCGCCGGTTGAAATTCCGGGTGTGAGCAATATCAATTTTCTTCGTATGGCGTACAATGCTAAGAGAGAGAAGCTTGGATTGCCTGAGCTTGGAGTATTTGAGTTCTACGCTTATTTGTATCCGAAACTTGAACTTGTGAACATGAAGACGGATTTTCTTGATAGAAATGTTAATGAAGGCTTTAGCGGCGGTGAAAAGAAGCGCAATGAGATTTTACAACTGGCGGTTTTGGGGGCAGAATTGGCTTTATTGGATGAAATTGATTCTGGCCTGGATGTTGACGCGTTCCAAGATGTAGCCAAGGCAGTGAATGGGCTTTTAACTCCAACAAATTCTGTGTTGCTAATTACTCATTATCTACGGCTTCTACAATTTATAAAGCCAACATGCATCCACATTATGGTAAGTCAGTGGGAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0015399 GO:0015405 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

309

Amino Acids

33.83

Weight (kDa)

6.32

Isoelectric Point (pI)

62.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	101 - 255	3.1e-20	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10670
fragaria_vesca	FvH4_4g11580
malus_domestica	MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis	pycom02g22330
rosa_chinensis	RchiOBHm_Chr6g0244501
rosa_laevigata	RLG00000015353
rosa_multiflora	Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii	Rroxscaffold_7G00215790
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana	Rw6G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	884
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccBSI	CCGCTC	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	2 cut(s)	180, 791
AccIII	TCCGGA	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	519, 838
AfaI	GTAC	1 cut(s)	560
AfiI	CCNNNNNNNGG	2 cut(s)	596, 907
AflIII	ACRYGT	1 cut(s)	789
AgsI	TTSAA	2 cut(s)	518, 638
AjnI	CCWGG	1 cut(s)	777
AluBI	AGCT	3 cut(s)	244, 580, 595
AluI	AGCT	3 cut(s)	244, 580, 595
Alw26I	GTCTC	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	4 cut(s)	3, 184, 226, 775
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	2 cut(s)	519, 838
AspLEI	GCGC	2 cut(s)	182, 711
AspS9I	GGNCC	2 cut(s)	4, 477
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	6 cut(s)	39, 78, 310, 344, 409, 710
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	659
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	5 cut(s)	182, 257, 329, 376, 884
BciT130I	CCWGG	1 cut(s)	779
BciVI	GTATCC	1 cut(s)	636
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	636
BisI	GCNGC	5 cut(s)	163, 212, 226, 293, 694
BlsI	GCNGC	5 cut(s)	164, 213, 227, 294, 695
Bme1390I	CCNGG	2 cut(s)	525, 779
Bme18I	GGWCC	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	4, 477
BmiI	GGNNCC	2 cut(s)	364, 479
BmrFI	CCNGG	2 cut(s)	525, 779
BmsI	GCATC	2 cut(s)	409, 906
BpiI	GAAGAC	1 cut(s)	659
Bpu10I	CCTNAGC	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	384, 807
BsaWI	WCCGGW	2 cut(s)	403, 419
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 907
Bse118I	RCCGGY	2 cut(s)	182, 511
Bse1I	ACTGG	1 cut(s)	732
Bse3DI	GCAATG	1 cut(s)	718
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	2 cut(s)	384, 807
BseGI	GGATG	6 cut(s)	246, 400, 475, 766, 787, 897
BseLI	CCNNNNNNNGG	2 cut(s)	596, 907
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	732
BseRI	GAGGAG	6 cut(s)	57, 122, 125, 128, 160, 181
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	2 cut(s)	180, 791
BshFI	GGCC	4 cut(s)	5, 186, 228, 777
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	8 cut(s)	183, 222, 366, 404, 420, 486, 512, 524
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	2 cut(s)	596, 907
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	4 cut(s)	5, 186, 228, 777
Bso31I	GGTCTC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	233
Bsp13I	TCCGGA	1 cut(s)	403
BspANI	GGCC	4 cut(s)	5, 186, 228, 777
BspCNI	CTCAG	1 cut(s)	583
BspEI	TCCGGA	1 cut(s)	403
BspFNI	CGCG	2 cut(s)	180, 791
BspLI	GGNNCC	2 cut(s)	364, 479
BspQI	GCTCTTC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	718
BsrFI	RCCGGY	2 cut(s)	182, 511
BsrI	ACTGG	1 cut(s)	732
BssAI	RCCGGY	2 cut(s)	182, 511
BssECI	CCNNGG	2 cut(s)	384, 807
BssT1I	CCWWGG	2 cut(s)	384, 807
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	2 cut(s)	60, 322
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	2 cut(s)	567, 591
BstF5I	GGATG	6 cut(s)	246, 400, 475, 766, 787, 897
BstFNI	CGCG	2 cut(s)	180, 791
BstHHI	GCGC	2 cut(s)	182, 711
BstMAI	GTCTC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	9 cut(s)	150, 159, 278, 360, 451, 563, 586, 693, 749
BstNI	CCWGG	1 cut(s)	779
BstNSI	RCATGY	1 cut(s)	897
BstSCI	CCNGG	2 cut(s)	523, 777
BstUI	CGCG	2 cut(s)	180, 791
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	659
BstXI	CCANNNNNNTGG	1 cut(s)	391
BsuI	GTATCC	1 cut(s)	636
BsuRI	GGCC	4 cut(s)	5, 186, 228, 777
BtsCI	GGATG	6 cut(s)	246, 400, 475, 766, 787, 897
BtsI	GCAGTG	2 cut(s)	433, 819
BtsIMutI	CAGTG	3 cut(s)	433, 819, 923
Cac8I	GCNNGC	1 cut(s)	184
CfoI	GCGC	2 cut(s)	182, 711
Cfr10I	RCCGGY	2 cut(s)	182, 511
Cfr13I	GGNCC	2 cut(s)	4, 477
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	3 cut(s)	349, 649, 894
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	2 cut(s)	567, 591
DraI	TTTAAA	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
EciI	GGCGGA	2 cut(s)	184, 198
Eco130I	CCWWGG	2 cut(s)	384, 807
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	777
EcoT14I	CCWWGG	2 cut(s)	384, 807
EcoT22I	ATGCAT	1 cut(s)	899
ErhI	CCWWGG	2 cut(s)	384, 807
FaeI	CATG	3 cut(s)	352, 652, 897
FaiI	YATR	8 cut(s)	350, 497, 554, 650, 884, 895, 908, 928
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	3 cut(s)	348, 648, 893
FauI	CCCGC	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	5 cut(s)	163, 212, 226, 293, 694
FokI	GGATG	6 cut(s)	233, 387, 482, 773, 794, 884
Fsp4HI	GCNGC	5 cut(s)	163, 212, 226, 293, 694
GlaI	GCGC	2 cut(s)	181, 710
GluI	GCNGC	5 cut(s)	163, 212, 226, 293, 694
HaeIII	GGCC	4 cut(s)	5, 186, 228, 777
HapII	CCGG	8 cut(s)	183, 222, 366, 404, 420, 486, 512, 524
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	2 cut(s)	182, 711
Hin1II	CATG	3 cut(s)	352, 652, 897
Hin6I	GCGC	2 cut(s)	180, 709
HinP1I	GCGC	2 cut(s)	180, 709
HincII	GTYRAC	2 cut(s)	313, 787
HindII	GTYRAC	2 cut(s)	313, 787
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	4 cut(s)	203, 284, 298, 770
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	8 cut(s)	183, 222, 366, 404, 420, 486, 512, 524
HphI	GGTGA	6 cut(s)	39, 78, 310, 344, 409, 710
Hpy166II	GTNNAC	5 cut(s)	313, 325, 340, 646, 787
Hpy188I	TCNGA	3 cut(s)	80, 260, 630
Hpy188III	TCNNGA	2 cut(s)	404, 665
Hpy8I	GTNNAC	5 cut(s)	313, 325, 340, 646, 787
HpyAV	CCTTC	6 cut(s)	51, 81, 93, 323, 388, 677
HpyCH4III	ACNGT	2 cut(s)	60, 322
HpyCH4V	TGCA	1 cut(s)	897
HpyF10VI	GCNNNNNNNGC	9 cut(s)	150, 159, 278, 360, 451, 563, 586, 693, 749
HpyF3I	CTNAG	2 cut(s)	567, 591
Hsp92II	CATG	3 cut(s)	352, 652, 897
HspAI	GCGC	2 cut(s)	180, 709
Kpn2I	TCCGGA	1 cut(s)	403
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	409, 906
MaeIII	GTNAC	1 cut(s)	415
MbiI	CCGCTC	1 cut(s)	144
MboII	GAAGA	4 cut(s)	138, 250, 539, 664
MluCI	AATT	9 cut(s)	94, 104, 519, 541, 746, 765, 838, 852, 878
MluI	ACGCGT	1 cut(s)	789
MmeI	TCCRAC	2 cut(s)	103, 857
Mph1103I	ATGCAT	1 cut(s)	899
MroI	TCCGGA	1 cut(s)	403
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	4 cut(s)	312, 438, 678, 827
MspI	CCGG	8 cut(s)	183, 222, 366, 404, 420, 486, 512, 524
MspR9I	CCNGG	2 cut(s)	525, 779
MvaI	CCWGG	1 cut(s)	779
MvnI	CGCG	2 cut(s)	180, 791
MwoI	GCNNNNNNNGC	9 cut(s)	150, 159, 278, 360, 451, 563, 586, 693, 749
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	525
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	3 cut(s)	352, 652, 897
NlaIV	GGNNCC	2 cut(s)	364, 479
NmuCI	GTSAC	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	899
NspI	RCATGY	1 cut(s)	897
PciSI	GCTCTTC	1 cut(s)	151
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	4 cut(s)	203, 284, 298, 770
PflMI	CCANNNNNTGG	1 cut(s)	907
PkrI	GCNGC	5 cut(s)	164, 213, 227, 294, 695
PpuMI	RGGWCCY	1 cut(s)	477
PsiI	TTATAA	1 cut(s)	884
Psp5II	RGGWCCY	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	777
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	2 cut(s)	364, 479
PspPI	GGNCC	2 cut(s)	4, 477
PspPPI	RGGWCCY	1 cut(s)	477
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	4 cut(s)	312, 438, 678, 827
SatI	GCNGC	5 cut(s)	163, 212, 226, 293, 694
Sau96I	GGNCC	2 cut(s)	4, 477
ScrFI	CCNGG	2 cut(s)	525, 779
SfaNI	GCATC	2 cut(s)	409, 906
SinI	GGWCC	1 cut(s)	477
Sse9I	AATT	9 cut(s)	94, 104, 519, 541, 746, 765, 838, 852, 878
StyD4I	CCNGG	2 cut(s)	523, 777
StyI	CCWWGG	2 cut(s)	384, 807
TaaI	ACNGT	2 cut(s)	60, 322
TaqI	TCGA	1 cut(s)	287
TasI	AATT	9 cut(s)	94, 104, 519, 541, 746, 765, 838, 852, 878
TauI	GCSGC	4 cut(s)	165, 214, 228, 696
TfiI	GAWTC	4 cut(s)	203, 284, 298, 770
Tru1I	TTAA	4 cut(s)	312, 438, 678, 827
Tru9I	TTAA	4 cut(s)	312, 438, 678, 827
TscAI	CASTG	3 cut(s)	433, 819, 923
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	4 cut(s)	33, 665, 696, 777
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	3 cut(s)	433, 819, 923
Van91I	CCANNNNNTGG	1 cut(s)	907
VpaK11BI	GGWCC	1 cut(s)	477
XapI	RAATTY	2 cut(s)	519, 838
XceI	RCATGY	1 cut(s)	897
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	324
Zsp2I	ATGCAT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.