Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014298

Physical Location & Seq

Genomic Coordinates Reverse (-)

1679891 .. 1683126

Gene Structure 3236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG018200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGTGAAACTTCAATTTTTTGGCAACACAGTTCAAAAGAGTGAAATTCAGCTGTTCATATTCACCACTCTTTTGGCACGAAGTTACCCCACGCCGGCAAAAAGCACGACTAAACTAACCCCCCTCCCTCCCTATCTCACTCTCTCACTTCAAATTCAGCACCACCACCACGCAGCTCTCTATCTCTCTCCGATGGCCCTCTCGCTATTTCACCACCCATCTCTCACTCTCCCTTCACCACCACCACAACCCTCTCCTCCTTCTCTCCGACCTTCACCCTCCAATTCCCTCCAATTTACACTCCCTGCCCCTCGCCCCCTCCTCCTCCGCTCTTCCCGCCCAAACCGCCCCCACTCCTCACTCCGCGCCGGCCTCTCCTCCGCCGTCAATTCTCCGCCGCAGACTTCCGGCAGTCAACCCGAGAAGAATCTCATCCTCCAAGTCAAAGACCTAACCGCCGTGATTGCCGAATCGAAGCAGCAGATTCTTAAAGGCGTTAACCTCACCGTCTACGAAGGTGAGGTTCACGCCGTCATGGGCAAGAACGGCTCCGGCAAAAGCACTTTCGCCAAGGTTTTGGTGGGGCATCCGGATTACGAAGTCACCGGAGGCAGTGTGGTGTTTAAAGGGCAAGACTTGCTGGAAATGGAAGCCGACGAGAGGTCCCTCGCCGGACTTTTTATGAGTTTTCAGTCGCCGGTTGAAATTCCGGGTGTGAGCAATATCAATTTTCTTCGTATGGCGTACAATGCTAAGAGAGAGAAGCTTGGATTGCCTGAGCTTGGAGTATTTGAGTTCTATGCTTATTTGTATCCGAAACTTGAACTTGTGAACATGAAGACGGATTTTCTTGATAGGAATGTTAATGAAGGCTTTAGCGGTGGTGAAAAGAAGCGCAATGAGATTTTACAACTGGCGGTTTTGGGGGCAGAGTTGGCTTTATTGGATGAAATTGATTCTGGCCTGGATGTTGACGCGTTCCAAGATGTAGCCAAGGCAGTGAATGGGCTTCTGACTCCAACAAATTCTGTGTTGCTAATTACTCATTATTTACGACTTCTACAATTTATAAAGCCAACATGCATCCACATTATGGTAAGTCAGTGGGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0015399 GO:0015405 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

371

Amino Acids

40.86

Weight (kDa)

8.46

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	163 - 317	4.9e-20	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10670
fragaria_vesca	FvH4_4g11580
malus_domestica	MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis	pycom02g22330
rosa_chinensis	RchiOBHm_Chr6g0244501
rosa_laevigata	RLG00000015353
rosa_multiflora	Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii	Rroxscaffold_7G00215790
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana	Rw6G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1070
AccB7I	CCANNNNNTGG	1 cut(s)	1093
AccBSI	CCGCTC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	510
AccII	CGCG	2 cut(s)	366, 977
AccIII	TCCGGA	1 cut(s)	589
AcsI	RAATTY	4 cut(s)	45, 153, 705, 1024
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	4 cut(s)	94, 660, 782, 1093
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	5 cut(s)	14, 35, 152, 704, 824
AhdI	GACNNNNNGTC	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	963
AluBI	AGCT	4 cut(s)	52, 176, 766, 781
AluI	AGCT	4 cut(s)	52, 176, 766, 781
Ama87I	CYCGRG	1 cut(s)	419
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	3 cut(s)	195, 370, 961
ApeKI	GCWGC	2 cut(s)	173, 478
ApoI	RAATTY	4 cut(s)	45, 153, 705, 1024
AspLEI	GCGC	2 cut(s)	368, 897
AspS9I	GGNCC	2 cut(s)	196, 663
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	9 cut(s)	16, 55, 203, 228, 267, 496, 530, 595, 896
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	663
BbsI	GAAGAC	1 cut(s)	845
BbvI	GCAGC	2 cut(s)	185, 490
BccI	CCATC	2 cut(s)	187, 226
BceAI	ACGGC	4 cut(s)	368, 443, 515, 562
BciT130I	CCWGG	1 cut(s)	965
BciVI	GTATCC	1 cut(s)	822
BcnI	CCSGG	1 cut(s)	711
BfuI	GTATCC	1 cut(s)	822
BisI	GCNGC	3 cut(s)	174, 398, 479
BlsI	GCNGC	3 cut(s)	175, 399, 480
Bme1390I	CCNGG	2 cut(s)	711, 965
Bme18I	GGWCC	1 cut(s)	663
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	196, 663
BmiI	GGNNCC	2 cut(s)	550, 665
BmrFI	CCNGG	2 cut(s)	711, 965
BmsI	GCATC	2 cut(s)	595, 1092
BpiI	GAAGAC	1 cut(s)	845
Bpu10I	CCTNAGC	1 cut(s)	777
BpuMI	CCSGG	1 cut(s)	711
BsaJI	CCNNGG	2 cut(s)	570, 993
BsaWI	WCCGGW	2 cut(s)	589, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 660, 782, 1093
Bse118I	RCCGGY	3 cut(s)	94, 368, 697
Bse1I	ACTGG	1 cut(s)	918
Bse3DI	GCAATG	1 cut(s)	904
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	965
BseDI	CCNNGG	2 cut(s)	570, 993
BseGI	GGATG	5 cut(s)	432, 586, 952, 973, 1083
BseLI	CCNNNNNNNGG	4 cut(s)	94, 660, 782, 1093
BseMI	GCAATG	1 cut(s)	904
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	1 cut(s)	918
BseRI	GAGGAG	5 cut(s)	246, 311, 314, 346, 367
BseXI	GCAGC	2 cut(s)	185, 490
Bsh1236I	CGCG	2 cut(s)	366, 977
BshFI	GGCC	3 cut(s)	197, 372, 963
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	9 cut(s)	95, 369, 408, 552, 590, 606, 672, 698, 710
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	4 cut(s)	94, 660, 782, 1093
BsmFI	GGGAC	1 cut(s)	649
BsnI	GGCC	3 cut(s)	197, 372, 963
BsoBI	CYCGRG	1 cut(s)	419
Bsp13I	TCCGGA	1 cut(s)	589
BspANI	GGCC	3 cut(s)	197, 372, 963
BspCNI	CTCAG	1 cut(s)	769
BspEI	TCCGGA	1 cut(s)	589
BspFNI	CGCG	2 cut(s)	366, 977
BspLI	GGNNCC	2 cut(s)	550, 665
BspQI	GCTCTTC	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	904
BsrFI	RCCGGY	3 cut(s)	94, 368, 697
BsrI	ACTGG	1 cut(s)	918
BssAI	RCCGGY	3 cut(s)	94, 368, 697
BssECI	CCNNGG	2 cut(s)	570, 993
BssT1I	CCWWGG	2 cut(s)	570, 993
Bst2UI	CCWGG	1 cut(s)	965
Bst4CI	ACNGT	2 cut(s)	31, 508
Bst6I	CTCTTC	1 cut(s)	337
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstC8I	GCNNGC	2 cut(s)	96, 370
BstDEI	CTNAG	2 cut(s)	753, 777
BstF5I	GGATG	5 cut(s)	432, 586, 952, 973, 1083
BstFNI	CGCG	2 cut(s)	366, 977
BstHHI	GCGC	2 cut(s)	368, 897
BstMWI	GCNNNNNNNGC	8 cut(s)	336, 345, 464, 546, 637, 749, 772, 935
BstNI	CCWGG	1 cut(s)	965
BstNSI	RCATGY	1 cut(s)	1083
BstSCI	CCNGG	2 cut(s)	709, 963
BstUI	CGCG	2 cut(s)	366, 977
BstV1I	GCAGC	2 cut(s)	185, 490
BstV2I	GAAGAC	1 cut(s)	845
BstXI	CCANNNNNNTGG	2 cut(s)	73, 577
BsuI	GTATCC	1 cut(s)	822
BsuRI	GGCC	3 cut(s)	197, 372, 963
BtsCI	GGATG	5 cut(s)	432, 586, 952, 973, 1083
BtsI	GCAGTG	2 cut(s)	619, 1005
BtsIMutI	CAGTG	3 cut(s)	619, 1005, 1109
Cac8I	GCNNGC	2 cut(s)	96, 370
CfoI	GCGC	2 cut(s)	368, 897
Cfr10I	RCCGGY	3 cut(s)	94, 368, 697
Cfr13I	GGNCC	2 cut(s)	196, 663
CseI	GACGC	1 cut(s)	983
Csp6I	GTAC	1 cut(s)	745
CviAII	CATG	3 cut(s)	535, 835, 1080
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	2 cut(s)	753, 777
DraI	TTTAAA	1 cut(s)	625
DriI	GACNNNNNGTC	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	337
EciI	GGCGGA	2 cut(s)	370, 384
Eco130I	CCWWGG	2 cut(s)	570, 993
Eco47I	GGWCC	1 cut(s)	663
Eco88I	CYCGRG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	963
EcoT14I	CCWWGG	2 cut(s)	570, 993
EcoT22I	ATGCAT	1 cut(s)	1085
ErhI	CCWWGG	2 cut(s)	570, 993
FaeI	CATG	3 cut(s)	538, 838, 1083
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	3 cut(s)	534, 834, 1079
FauI	CCCGC	1 cut(s)	344
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	3 cut(s)	174, 398, 479
FokI	GGATG	5 cut(s)	419, 573, 959, 980, 1070
Fsp4HI	GCNGC	3 cut(s)	174, 398, 479
GlaI	GCGC	2 cut(s)	367, 896
GluI	GCNGC	3 cut(s)	174, 398, 479
HaeIII	GGCC	3 cut(s)	197, 372, 963
HapII	CCGG	9 cut(s)	95, 369, 408, 552, 590, 606, 672, 698, 710
HgaI	GACGC	1 cut(s)	983
HhaI	GCGC	2 cut(s)	368, 897
Hin1II	CATG	3 cut(s)	538, 838, 1083
Hin6I	GCGC	2 cut(s)	366, 895
HinP1I	GCGC	2 cut(s)	366, 895
HincII	GTYRAC	3 cut(s)	416, 499, 973
HindII	GTYRAC	3 cut(s)	416, 499, 973
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	5 cut(s)	427, 470, 484, 956, 1015
HpaI	GTTAAC	1 cut(s)	499
HpaII	CCGG	9 cut(s)	95, 369, 408, 552, 590, 606, 672, 698, 710
HphI	GGTGA	9 cut(s)	16, 55, 203, 228, 267, 496, 530, 595, 896
Hpy166II	GTNNAC	6 cut(s)	416, 499, 511, 526, 832, 973
Hpy188I	TCNGA	4 cut(s)	192, 269, 816, 1014
Hpy188III	TCNNGA	2 cut(s)	590, 851
Hpy8I	GTNNAC	6 cut(s)	416, 499, 511, 526, 832, 973
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	5 cut(s)	243, 270, 282, 509, 863
HpyCH4III	ACNGT	2 cut(s)	31, 508
HpyCH4V	TGCA	1 cut(s)	1083
HpyF10VI	GCNNNNNNNGC	8 cut(s)	336, 345, 464, 546, 637, 749, 772, 935
HpyF3I	CTNAG	2 cut(s)	753, 777
Hsp92II	CATG	3 cut(s)	538, 838, 1083
HspAI	GCGC	2 cut(s)	366, 895
Kpn2I	TCCGGA	1 cut(s)	589
KroI	GCCGGC	2 cut(s)	94, 368
KroNI	GCCGGC	2 cut(s)	96, 370
KspAI	GTTAAC	1 cut(s)	499
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	554
Lsp1109I	GCAGC	2 cut(s)	185, 490
LweI	GCATC	2 cut(s)	595, 1092
MaeIII	GTNAC	2 cut(s)	83, 601
MbiI	CCGCTC	1 cut(s)	330
MboII	GAAGA	4 cut(s)	324, 436, 725, 850
MluI	ACGCGT	1 cut(s)	975
MlyI	GAGTC	1 cut(s)	1009
MmeI	TCCRAC	2 cut(s)	292, 1043
Mph1103I	ATGCAT	1 cut(s)	1085
MroI	TCCGGA	1 cut(s)	589
MroNI	GCCGGC	2 cut(s)	94, 368
MseI	TTAA	4 cut(s)	489, 498, 624, 864
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	9 cut(s)	95, 369, 408, 552, 590, 606, 672, 698, 710
MspR9I	CCNGG	2 cut(s)	711, 965
MvaI	CCWGG	1 cut(s)	965
MvnI	CGCG	2 cut(s)	366, 977
MwoI	GCNNNNNNNGC	8 cut(s)	336, 345, 464, 546, 637, 749, 772, 935
NaeI	GCCGGC	2 cut(s)	96, 370
NciI	CCSGG	1 cut(s)	711
NgoMIV	GCCGGC	2 cut(s)	94, 368
NlaIII	CATG	3 cut(s)	538, 838, 1083
NlaIV	GGNNCC	2 cut(s)	550, 665
NmuCI	GTSAC	1 cut(s)	601
NsiI	ATGCAT	1 cut(s)	1085
NspI	RCATGY	1 cut(s)	1083
PciSI	GCTCTTC	1 cut(s)	337
PdiI	GCCGGC	2 cut(s)	96, 370
PfeI	GAWTC	4 cut(s)	427, 470, 484, 956
PflMI	CCANNNNNTGG	1 cut(s)	1093
PkrI	GCNGC	3 cut(s)	175, 399, 480
PleI	GAGTC	1 cut(s)	1009
PpsI	GAGTC	1 cut(s)	1009
PpuMI	RGGWCCY	1 cut(s)	663
PsiI	TTATAA	1 cut(s)	1070
Psp5II	RGGWCCY	1 cut(s)	663
Psp6I	CCWGG	1 cut(s)	963
PspGI	CCWGG	1 cut(s)	963
PspN4I	GGNNCC	2 cut(s)	550, 665
PspPI	GGNCC	2 cut(s)	196, 663
PspPPI	RGGWCCY	1 cut(s)	663
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	4 cut(s)	489, 498, 624, 864
SatI	GCNGC	3 cut(s)	174, 398, 479
Sau96I	GGNCC	2 cut(s)	196, 663
SchI	GAGTC	1 cut(s)	1009
ScrFI	CCNGG	2 cut(s)	711, 965
SfaNI	GCATC	2 cut(s)	595, 1092
SinI	GGWCC	1 cut(s)	663
StyD4I	CCNGG	2 cut(s)	709, 963
StyI	CCWWGG	2 cut(s)	570, 993
TaaI	ACNGT	2 cut(s)	31, 508
TaqI	TCGA	1 cut(s)	473
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	4 cut(s)	427, 470, 484, 956
Tru1I	TTAA	4 cut(s)	489, 498, 624, 864
Tru9I	TTAA	4 cut(s)	489, 498, 624, 864
TscAI	CASTG	3 cut(s)	619, 1005, 1109
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	2 cut(s)	173, 478
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	4 cut(s)	46, 851, 882, 963
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	3 cut(s)	619, 1005, 1109
Van91I	CCANNNNNTGG	1 cut(s)	1093
VpaK11BI	GGWCC	1 cut(s)	663
XapI	RAATTY	4 cut(s)	45, 153, 705, 1024
XceI	RCATGY	1 cut(s)	1083
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	510
Zsp2I	ATGCAT	1 cut(s)	1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.