Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014298

Physical Location & Seq

Genomic Coordinates Forward (+)

66348952 .. 66351884

Gene Structure 2933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCCCTCTCGCTATTTCACCACCCATCTCTCACTCTCCCTTCACCACCACCACAGCCCTCTCCTCCTTCTCTCCGACTTTCACCCTCCACTTCCCTCCAATTTACACTCCCTGCCCCTCGCCCCCTCCTCCTCCTCCACTCTTCCCGCCCAAACCGCCACCACTCCTCGCTCCGCGCCGGCCTCTCCTCCGCCGTCGATTCTCCGCCGCAGACTTCCGGCGGCCAACCCGAGAAGAAGCTCATCCTCCAAGTCAAAGACCTAACCGCCGTGATTGCCGAATCGAAGCAGGAGATTCTCAAGGGCGTTAACCTCACCGTCTACGAAGGTGAGGTTCACGCCGTCATGGGCAAGAACGGCTCCGGCAAAAGCACCTTCGCCAAGGTTTTGGTGGGGCATCCGGATTACGAAGTCACCGGAGGCAGTGTGGTGTTTAAAGGGCAAGACTTGCTGGAAATGGAAGCCGACGAGAGGTCCCTCGCCGGACTTTTTATGAGTTTTCAGTCGCCGGTTGAAATTCCGGGTGTGAGCAATATCAATTTTCTTCGTATGGCGTACAATGCTAAGAGAGAGAAGCTTGGATTGCCTGAGCTTGGAGTATTTGAGTTCTATGCTTATTTGTATCCGAAACTTGAACTTGTGAACATGAAGACGGATTTTCTTGATAGAAATGTTAATGAAGGCTTTAGCGGTGGTGAAAAGAAGCGCAATGAGATTTTACAACTGGCGGTTTTGGGGGCAGAATTGGCTTTATTGGATGAAATTGATTCTGGCCTGGATGTTGACGCGTTCCAAGATGTAGCCAAGGCAGTGAATGGGCTTTTAACTCCAACAAATTCTGTGTTGCTAATTACTCATTATCTACGGCTTCTACAATTTATAAAGCCAACATGCATCCACATTATGGAGAATGGGAAAATTGTGAAGACAGGTGACATCTCTTTGGCAGAAGCACTAGAGAAGGATGGTTATGAAGCAATTGCAAAATCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0015399 GO:0015405 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

331

Amino Acids

36.04

Weight (kDa)

6.08

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	100 - 254	3.7e-20	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10670
fragaria_vesca	FvH4_4g11580
malus_domestica	MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis	pycom02g22330
rosa_chinensis	RchiOBHm_Chr6g0244501
rosa_laevigata	RLG00000015353
rosa_multiflora	Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii	Rroxscaffold_7G00215790
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana	Rw6G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	881
AccB7I	CCANNNNNTGG	1 cut(s)	904
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	2 cut(s)	177, 788
AccIII	TCCGGA	1 cut(s)	400
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	2 cut(s)	516, 835
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	3 cut(s)	471, 593, 904
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	2 cut(s)	515, 635
AhdI	GACNNNNNGTC	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	3 cut(s)	241, 577, 592
AluI	AGCT	3 cut(s)	241, 577, 592
Ama87I	CYCGRG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	4 cut(s)	3, 181, 223, 772
ApoI	RAATTY	2 cut(s)	516, 835
AspLEI	GCGC	2 cut(s)	179, 708
AspS9I	GGNCC	2 cut(s)	4, 474
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	8 cut(s)	11, 36, 75, 307, 341, 406, 707, 944
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	474
BbsI	GAAGAC	2 cut(s)	656, 932
BccI	CCATC	2 cut(s)	34, 959
BceAI	ACGGC	5 cut(s)	179, 254, 326, 373, 881
BciT130I	CCWGG	1 cut(s)	776
BciVI	GTATCC	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	522
BfaI	CTAG	1 cut(s)	956
BfuI	GTATCC	1 cut(s)	633
BisI	GCNGC	2 cut(s)	209, 223
BlsI	GCNGC	2 cut(s)	210, 224
Bme1390I	CCNGG	2 cut(s)	522, 776
Bme18I	GGWCC	1 cut(s)	474
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	4, 474
BmiI	GGNNCC	2 cut(s)	361, 476
BmrFI	CCNGG	2 cut(s)	522, 776
BmsI	GCATC	2 cut(s)	406, 903
BpiI	GAAGAC	2 cut(s)	656, 932
Bpu10I	CCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	381, 804
BsaWI	WCCGGW	2 cut(s)	400, 416
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	471, 593, 904
Bse118I	RCCGGY	2 cut(s)	179, 508
Bse1I	ACTGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	715
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	2 cut(s)	381, 804
BseGI	GGATG	6 cut(s)	243, 397, 763, 784, 894, 970
BseLI	CCNNNNNNNGG	3 cut(s)	471, 593, 904
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	1 cut(s)	729
BseRI	GAGGAG	6 cut(s)	54, 119, 122, 125, 157, 178
Bsh1236I	CGCG	2 cut(s)	177, 788
BshFI	GGCC	4 cut(s)	5, 183, 225, 774
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	8 cut(s)	180, 219, 363, 401, 417, 483, 509, 521
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	3 cut(s)	471, 593, 904
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	4 cut(s)	5, 183, 225, 774
BsoBI	CYCGRG	1 cut(s)	230
Bsp13I	TCCGGA	1 cut(s)	400
BspANI	GGCC	4 cut(s)	5, 183, 225, 774
BspCNI	CTCAG	1 cut(s)	580
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	2 cut(s)	177, 788
BspLI	GGNNCC	2 cut(s)	361, 476
BsrDI	GCAATG	1 cut(s)	715
BsrFI	RCCGGY	2 cut(s)	179, 508
BsrI	ACTGG	1 cut(s)	729
BssAI	RCCGGY	2 cut(s)	179, 508
BssECI	CCNNGG	2 cut(s)	381, 804
BssT1I	CCWWGG	2 cut(s)	381, 804
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	564, 588
BstF5I	GGATG	6 cut(s)	243, 397, 763, 784, 894, 970
BstFNI	CGCG	2 cut(s)	177, 788
BstHHI	GCGC	2 cut(s)	179, 708
BstMWI	GCNNNNNNNGC	7 cut(s)	156, 275, 357, 448, 560, 583, 746
BstNI	CCWGG	1 cut(s)	776
BstNSI	RCATGY	1 cut(s)	894
BstSCI	CCNGG	2 cut(s)	520, 774
BstUI	CGCG	2 cut(s)	177, 788
BstV2I	GAAGAC	2 cut(s)	656, 932
BstXI	CCANNNNNNTGG	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	4 cut(s)	5, 183, 225, 774
BtsCI	GGATG	6 cut(s)	243, 397, 763, 784, 894, 970
BtsI	GCAGTG	2 cut(s)	430, 816
BtsIMutI	CAGTG	2 cut(s)	430, 816
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	2 cut(s)	179, 708
Cfr10I	RCCGGY	2 cut(s)	179, 508
Cfr13I	GGNCC	2 cut(s)	4, 474
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	3 cut(s)	346, 646, 891
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	2 cut(s)	564, 588
DraI	TTTAAA	1 cut(s)	436
DriI	GACNNNNNGTC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	148
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	148
EciI	GGCGGA	2 cut(s)	181, 195
Eco130I	CCWWGG	2 cut(s)	381, 804
Eco47I	GGWCC	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	774
EcoT14I	CCWWGG	2 cut(s)	381, 804
EcoT22I	ATGCAT	1 cut(s)	896
ErhI	CCWWGG	2 cut(s)	381, 804
FaeI	CATG	3 cut(s)	349, 649, 894
FaiI	YATR	9 cut(s)	347, 494, 551, 612, 647, 881, 892, 905, 972
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	3 cut(s)	345, 645, 890
FauI	CCCGC	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	209, 223
FokI	GGATG	6 cut(s)	230, 384, 770, 791, 881, 977
Fsp4HI	GCNGC	2 cut(s)	209, 223
FspBI	CTAG	1 cut(s)	956
GlaI	GCGC	2 cut(s)	178, 707
GluI	GCNGC	2 cut(s)	209, 223
HaeIII	GGCC	4 cut(s)	5, 183, 225, 774
HapII	CCGG	8 cut(s)	180, 219, 363, 401, 417, 483, 509, 521
HgaI	GACGC	1 cut(s)	794
HhaI	GCGC	2 cut(s)	179, 708
Hin1II	CATG	3 cut(s)	349, 649, 894
Hin6I	GCGC	2 cut(s)	177, 706
HinP1I	GCGC	2 cut(s)	177, 706
HincII	GTYRAC	2 cut(s)	310, 784
HindII	GTYRAC	2 cut(s)	310, 784
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	4 cut(s)	200, 281, 295, 767
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	8 cut(s)	180, 219, 363, 401, 417, 483, 509, 521
HphI	GGTGA	8 cut(s)	11, 36, 75, 307, 341, 406, 707, 944
Hpy166II	GTNNAC	5 cut(s)	310, 322, 337, 643, 784
Hpy188I	TCNGA	2 cut(s)	77, 627
Hpy188III	TCNNGA	2 cut(s)	401, 662
Hpy8I	GTNNAC	5 cut(s)	310, 322, 337, 643, 784
Hpy99I	CGWCG	2 cut(s)	200, 470
HpyAV	CCTTC	6 cut(s)	51, 78, 320, 385, 674, 955
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	894, 983
HpyF10VI	GCNNNNNNNGC	7 cut(s)	156, 275, 357, 448, 560, 583, 746
HpyF3I	CTNAG	2 cut(s)	564, 588
Hsp92II	CATG	3 cut(s)	349, 649, 894
HspAI	GCGC	2 cut(s)	177, 706
Kpn2I	TCCGGA	1 cut(s)	400
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
KspAI	GTTAAC	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	177, 365
LweI	GCATC	2 cut(s)	406, 903
MaeI	CTAG	1 cut(s)	956
MaeIII	GTNAC	2 cut(s)	412, 932
MboII	GAAGA	5 cut(s)	135, 247, 536, 661, 937
MfeI	CAATTG	1 cut(s)	978
MluI	ACGCGT	1 cut(s)	786
MmeI	TCCRAC	2 cut(s)	100, 854
Mph1103I	ATGCAT	1 cut(s)	896
MroI	TCCGGA	1 cut(s)	400
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	5 cut(s)	309, 435, 675, 824, 994
MspI	CCGG	8 cut(s)	180, 219, 363, 401, 417, 483, 509, 521
MspR9I	CCNGG	2 cut(s)	522, 776
MunI	CAATTG	1 cut(s)	978
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	2 cut(s)	177, 788
MwoI	GCNNNNNNNGC	7 cut(s)	156, 275, 357, 448, 560, 583, 746
NaeI	GCCGGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	522
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	3 cut(s)	349, 649, 894
NlaIV	GGNNCC	2 cut(s)	361, 476
NmuCI	GTSAC	2 cut(s)	412, 932
NsiI	ATGCAT	1 cut(s)	896
NspI	RCATGY	1 cut(s)	894
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	4 cut(s)	200, 281, 295, 767
PflMI	CCANNNNNTGG	1 cut(s)	904
PkrI	GCNGC	2 cut(s)	210, 224
PpuMI	RGGWCCY	1 cut(s)	474
PsiI	TTATAA	1 cut(s)	881
Psp5II	RGGWCCY	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	2 cut(s)	361, 476
PspPI	GGNCC	2 cut(s)	4, 474
PspPPI	RGGWCCY	1 cut(s)	474
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SaqAI	TTAA	5 cut(s)	309, 435, 675, 824, 994
SatI	GCNGC	2 cut(s)	209, 223
Sau96I	GGNCC	2 cut(s)	4, 474
ScrFI	CCNGG	2 cut(s)	522, 776
SfaNI	GCATC	2 cut(s)	406, 903
SinI	GGWCC	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SspMI	CTAG	1 cut(s)	956
StyD4I	CCNGG	2 cut(s)	520, 774
StyI	CCWWGG	2 cut(s)	381, 804
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	198, 284
TauI	GCSGC	2 cut(s)	211, 225
TfiI	GAWTC	4 cut(s)	200, 281, 295, 767
Tru1I	TTAA	5 cut(s)	309, 435, 675, 824, 994
Tru9I	TTAA	5 cut(s)	309, 435, 675, 824, 994
TscAI	CASTG	2 cut(s)	430, 816
TseFI	GTSAC	2 cut(s)	412, 932
Tsp45I	GTSAC	2 cut(s)	412, 932
TspDTI	ATGAA	4 cut(s)	662, 693, 774, 987
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	2 cut(s)	430, 816
Van91I	CCANNNNNTGG	1 cut(s)	904
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	2 cut(s)	516, 835
XceI	RCATGY	1 cut(s)	894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	1 cut(s)	956
Zsp2I	ATGCAT	1 cut(s)	896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.