Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014298

Physical Location & Seq

Genomic Coordinates Forward (+)

20461952 .. 20464154

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCGCTGTTGCGATTCCATCATCCATGTACGCTTCCCGCCCAACTACCACCATCCCCACTGCAATCTTCTTCTTCTTCTGCTACTTGTCTTGTTAGCGGCTATTCACCCTCCAAGTCCCCAGTATGTACAGGTTCTGCCCTCCGCCCCCTCTGTTGGCCATCACGCCACTGGCAGCTGCGGTCTCTGACGGCGGTGAAGGTGAAGGTGAAAGGTAGCCTCTCCTCCGCCGCGGAAAGTTCAGTTTCCAGCAGTAGAGGAGGGGAAGGAGAGAAGGAGCTGCTACTCCAAGTTGAGGATCTAACGGCCGTGATTGCCGAATCCAAACAGCAGATTCTCAAGGGCGTCAACCTCTCTGTCTACCAAGGGGAGGTTCATGCTATTATGGGAAAGAACGGTTCAGGGAAGAGCACTTTCGCCAAGGTTCTGGCTGGGCATCCGGAATACCAAGTTACCGGAGGTAGTGTTGTGTTTAAAGGGGAAAACTTGCTTGAAATGCCAGCGGAAGACCGGTCACTTGCGGGGCTTTTTATGAGTTTCCAGTCCCCAGTTGAGATCCCTGGTGTCACCAACATTGATTTTCTCAACATGGCGTACAATGCTCGCAGAAAGAAACTAGGACTGCCCGAGCTTGGACCGATTGAGTTCTATGCTTATATTTTTCCCAAACTTGATCTTATCAACATGAAGACGGACTTCCTTAATCGAAATGTTAATGAAGGCTTCAGTGGAGGTGAAAAGAAGCGCAATGAGATTTTGCAACTGGCGGTTTTGGGAGCAGAGTTGTCTATTTTGGATGAAATTGATTCTGGGCTGGATGTCGATGCACTTCGAGATGTAGCAAAGGCAGTCAATGGGCTTCTGACCCCGACAAATTCTGTATTGATGATTACTCATTACCTACGACTTCTGGAATTTATAAAGCCAACATGTATCCATATTATGGAGGATGGGAAAATTATAAAGACAGGTGACATCTCCTTAGCAGAAGTACTAGAGAAGGAAGGGTACAAAGCAATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0015399 GO:0015405 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

342

Amino Acids

36.93

Weight (kDa)

6.67

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10670
fragaria_vesca	FvH4_4g11580
malus_domestica	MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis	pycom02g22330
rosa_chinensis	RchiOBHm_Chr6g0244501
rosa_laevigata	RLG00000015353
rosa_multiflora	Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii	Rroxscaffold_7G00215790
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana	Rw6G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	920, 962
AccB7I	CCANNNNNTGG	1 cut(s)	943
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	233
AccIII	TCCGGA	1 cut(s)	439
AclWI	GGATC	2 cut(s)	306, 550
AcoI	YGGCCR	2 cut(s)	158, 306
AcsI	RAATTY	2 cut(s)	874, 914
AcuI	CTGAAG	1 cut(s)	709
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	5 cut(s)	31, 130, 596, 993, 1010
AfiI	CCNNNNNNNGG	5 cut(s)	156, 295, 370, 632, 943
AflIII	ACRYGT	1 cut(s)	929
AgeI	ACCGGT	1 cut(s)	510
AgsI	TTSAA	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	559
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AluBI	AGCT	3 cut(s)	178, 280, 631
AluI	AGCT	3 cut(s)	178, 280, 631
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	2 cut(s)	306, 550
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	626
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	2 cut(s)	158, 306
ApeKI	GCWGC	3 cut(s)	175, 178, 280
ApoI	RAATTY	2 cut(s)	874, 914
AsiGI	ACCGGT	1 cut(s)	510
AspLEI	GCGC	2 cut(s)	7, 747
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	7 cut(s)	99, 208, 214, 220, 559, 746, 983
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	635
BalI	TGGCCA	1 cut(s)	160
BarI	GAAGNNNNNNTAC	2 cut(s)	992, 1024
BbsI	GAAGAC	2 cut(s)	513, 695
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	3 cut(s)	165, 187, 267
BccI	CCATC	4 cut(s)	27, 61, 169, 944
BceAI	ACGGC	3 cut(s)	207, 293, 321
BciT130I	CCWGG	1 cut(s)	561
BciVI	GTATCC	1 cut(s)	944
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	2 cut(s)	617, 995
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	944
BisI	GCNGC	5 cut(s)	100, 176, 179, 231, 281
BlsI	GCNGC	5 cut(s)	101, 177, 180, 232, 282
BmcAI	AGTACT	1 cut(s)	993
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	635
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	635
BmrFI	CCNGG	1 cut(s)	561
BmrI	ACTGGG	2 cut(s)	116, 542
BmsI	GCATC	2 cut(s)	445, 814
BmuI	ACTGGG	2 cut(s)	116, 542
BpiI	GAAGAC	2 cut(s)	513, 695
Bpu10I	CCTNAGC	1 cut(s)	982
BpuEI	CTTGAG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	4 cut(s)	231, 364, 420, 559
BsaWI	WCCGGW	3 cut(s)	439, 455, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 295, 370, 632, 943
Bse118I	RCCGGY	1 cut(s)	510
Bse1I	ACTGG	5 cut(s)	122, 176, 541, 548, 768
Bse3DI	GCAATG	1 cut(s)	754
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	4 cut(s)	231, 364, 420, 559
BseGI	GGATG	6 cut(s)	22, 53, 436, 802, 823, 955
BseLI	CCNNNNNNNGG	5 cut(s)	156, 295, 370, 632, 943
BseMI	GCAATG	1 cut(s)	754
BseNI	ACTGG	5 cut(s)	122, 176, 541, 548, 768
BseRI	GAGGAG	2 cut(s)	214, 273
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	165, 187, 267
BseYI	CCCAGC	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	160, 308
BshTI	ACCGGT	1 cut(s)	510
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	3 cut(s)	440, 456, 511
BslFI	GGGAC	2 cut(s)	103, 529
BslI	CCNNNNNNNGG	5 cut(s)	156, 295, 370, 632, 943
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	2 cut(s)	103, 529
BsnI	GGCC	2 cut(s)	160, 308
Bso31I	GGTCTC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp13I	TCCGGA	1 cut(s)	439
Bsp1407I	TGTACA	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	298, 555, 673
BspANI	GGCC	2 cut(s)	160, 308
BspEI	TCCGGA	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	233
BspPI	GGATC	2 cut(s)	306, 550
BspQI	GCTCTTC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	754
BsrFI	RCCGGY	1 cut(s)	510
BsrGI	TGTACA	1 cut(s)	128
BsrI	ACTGG	5 cut(s)	122, 176, 541, 548, 768
BssAI	RCCGGY	1 cut(s)	510
BssECI	CCNNGG	4 cut(s)	231, 364, 420, 559
BssMI	GATC	3 cut(s)	298, 555, 673
BssNI	GRCGYC	1 cut(s)	345
BssT1I	CCWWGG	2 cut(s)	364, 420
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	401
BstACI	GRCGYC	1 cut(s)	345
BstAUI	TGTACA	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	501, 604
BstDEI	CTNAG	1 cut(s)	982
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	6 cut(s)	22, 53, 436, 802, 823, 955
BstFNI	CGCG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 747
BstKTI	GATC	3 cut(s)	301, 558, 676
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	3 cut(s)	298, 555, 673
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 496, 599
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	1 cut(s)	933
BstSCI	CCNGG	1 cut(s)	559
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	3 cut(s)	165, 187, 267
BstV2I	GAAGAC	2 cut(s)	513, 695
BstX2I	RGATCY	2 cut(s)	298, 555
BstXI	CCANNNNNNTGG	1 cut(s)	427
BstYI	RGATCY	2 cut(s)	298, 555
BstZI	CGGCCG	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	944
BsuRI	GGCC	2 cut(s)	160, 308
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	6 cut(s)	22, 53, 436, 802, 823, 955
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	3 cut(s)	59, 169, 733
Cac8I	GCNNGC	2 cut(s)	501, 604
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	2 cut(s)	7, 747
Cfr10I	RCCGGY	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	635
Cfr42I	CCGCGG	1 cut(s)	234
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	5 cut(s)	30, 129, 595, 992, 1009
CspAI	ACCGGT	1 cut(s)	510
CviAII	CATG	5 cut(s)	27, 377, 589, 685, 930
CviQI	GTAC	5 cut(s)	30, 129, 595, 992, 1009
DdeI	CTNAG	1 cut(s)	982
DpnI	GATC	3 cut(s)	300, 557, 675
DpnII	GATC	3 cut(s)	298, 555, 673
DraI	TTTAAA	1 cut(s)	475
EaeI	YGGCCR	2 cut(s)	158, 306
EagI	CGGCCG	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
EciI	GGCGGA	2 cut(s)	134, 217
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	364, 420
Eco31I	GGTCTC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	635
Eco52I	CGGCCG	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	709
Eco88I	CYCGRG	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	2 cut(s)	364, 420
ErhI	CCWWGG	2 cut(s)	364, 420
FaeI	CATG	5 cut(s)	30, 380, 592, 688, 933
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	2 cut(s)	103, 529
FatI	CATG	5 cut(s)	26, 376, 588, 684, 929
FauI	CCCGC	2 cut(s)	46, 514
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	100, 176, 179, 231, 281
FokI	GGATG	6 cut(s)	9, 40, 423, 809, 830, 962
Fsp4HI	GCNGC	5 cut(s)	100, 176, 179, 231, 281
FspBI	CTAG	2 cut(s)	617, 995
GlaI	GCGC	2 cut(s)	6, 746
GluI	GCNGC	5 cut(s)	100, 176, 179, 231, 281
GsaI	CCCAGC	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	160, 308
HapII	CCGG	3 cut(s)	440, 456, 511
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	2 cut(s)	7, 747
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	5 cut(s)	30, 380, 592, 688, 933
Hin6I	GCGC	2 cut(s)	5, 745
HinP1I	GCGC	2 cut(s)	5, 745
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	4 cut(s)	15, 320, 334, 806
HpaII	CCGG	3 cut(s)	440, 456, 511
HphI	GGTGA	7 cut(s)	99, 208, 214, 220, 559, 746, 983
Hpy166II	GTNNAC	2 cut(s)	349, 361
Hpy188I	TCNGA	2 cut(s)	189, 864
Hpy188III	TCNNGA	4 cut(s)	440, 833, 911, 1023
Hpy8I	GTNNAC	2 cut(s)	349, 361
HpyAV	CCTTC	7 cut(s)	193, 199, 260, 268, 713, 994, 998
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	64, 760, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 496, 599
HpyF3I	CTNAG	1 cut(s)	982
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	5 cut(s)	30, 380, 592, 688, 933
HspAI	GCGC	2 cut(s)	5, 745
Kpn2I	TCCGGA	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	298, 555, 673
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	2 cut(s)	277, 776
Lsp1109I	GCAGC	3 cut(s)	165, 187, 267
LweI	GCATC	2 cut(s)	445, 814
MaeI	CTAG	2 cut(s)	617, 995
MaeIII	GTNAC	4 cut(s)	451, 513, 565, 971
MalI	GATC	3 cut(s)	300, 557, 675
MboI	GATC	3 cut(s)	298, 555, 673
MboII	GAAGA	7 cut(s)	60, 63, 66, 69, 418, 518, 700
MflI	RGATCY	2 cut(s)	298, 555
MhlI	GDGCHC	1 cut(s)	413
MlsI	TGGCCA	1 cut(s)	160
MluCI	AATT	5 cut(s)	801, 874, 914, 957, 1017
MluNI	TGGCCA	1 cut(s)	160
Mox20I	TGGCCA	1 cut(s)	160
MroI	TCCGGA	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	160
MseI	TTAA	3 cut(s)	474, 702, 714
Msp20I	TGGCCA	1 cut(s)	160
MspA1I	CMGCKG	3 cut(s)	178, 233, 503
MspI	CCGG	3 cut(s)	440, 456, 511
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	314, 496, 599
NdeII	GATC	3 cut(s)	298, 555, 673
NlaIII	CATG	5 cut(s)	30, 380, 592, 688, 933
NmuCI	GTSAC	3 cut(s)	513, 565, 971
NspI	RCATGY	1 cut(s)	933
PciI	ACATGT	1 cut(s)	929
PciSI	GCTCTTC	1 cut(s)	401
PfeI	GAWTC	4 cut(s)	15, 320, 334, 806
PflMI	CCANNNNNTGG	1 cut(s)	943
PinAI	ACCGGT	1 cut(s)	510
PkrI	GCNGC	5 cut(s)	101, 177, 180, 232, 282
PscI	ACATGT	1 cut(s)	929
PsiI	TTATAA	2 cut(s)	920, 962
Psp6I	CCWGG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	635
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	2 cut(s)	298, 555
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	5 cut(s)	31, 130, 596, 993, 1010
RsaNI	GTAC	5 cut(s)	30, 129, 595, 992, 1009
SacII	CCGCGG	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	3 cut(s)	474, 702, 714
SatI	GCNGC	5 cut(s)	100, 176, 179, 231, 281
Sau3AI	GATC	3 cut(s)	298, 555, 673
Sau96I	GGNCC	1 cut(s)	635
ScaI	AGTACT	1 cut(s)	993
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	413
SfaNI	GCATC	2 cut(s)	445, 814
Sfr303I	CCGCGG	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	5 cut(s)	801, 874, 914, 957, 1017
SspMI	CTAG	2 cut(s)	617, 995
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	2 cut(s)	364, 420
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	3 cut(s)	706, 822, 832
TaqII	GACCGA	1 cut(s)	652
TasI	AATT	5 cut(s)	801, 874, 914, 957, 1017
TatI	WGTACW	2 cut(s)	128, 991
TauI	GCSGC	2 cut(s)	102, 233
TfiI	GAWTC	4 cut(s)	15, 320, 334, 806
Tru1I	TTAA	3 cut(s)	474, 702, 714
Tru9I	TTAA	3 cut(s)	474, 702, 714
TscAI	CASTG	3 cut(s)	66, 176, 733
TseFI	GTSAC	3 cut(s)	513, 565, 971
TseI	GCWGC	3 cut(s)	175, 178, 280
Tsp45I	GTSAC	3 cut(s)	513, 565, 971
TspDTI	ATGAA	4 cut(s)	365, 701, 732, 813
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	3 cut(s)	66, 176, 733
Van91I	CCANNNNNTGG	1 cut(s)	943
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	2 cut(s)	874, 914
XceI	RCATGY	1 cut(s)	933
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	2 cut(s)	617, 995
ZrmI	AGTACT	1 cut(s)	993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.