Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014298

Physical Location & Seq

Genomic Coordinates Reverse (-)

5550340 .. 5554270

Gene Structure 3931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1059800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCGCTGTCGCGATTTTATCATCCCTGTTGTTCTACTCTTCCCTCCCCACCACCATCCCCGCCGCAATCTTCTGCTGCTTCTTGTCTTGGTAGCAGCTATTCACCCTCCAAGTCCCCAGTATTTACAGGTTCTGCCCTCCTCCGCCCTCTCCGCTGGCAATCAAGCCACCGGCACCTGCGGTCTCTGACGGCGGTGAAGGTGAGGGGCAGCCTCTCTTCGGCCGCGGAAACTTCAATTTCTGGCAGAGAAGGAGAGAAGGAGCTGCTACTCGAAGTGAAGGATCTAACGGCCGTGATTGCCGAATCCAAACAGCTGATTCTCAAGGGCGTCAACCTCTCTGTCTACCAAGGGGAGGTTCATGCAATTATGGGAAAGAACGGTTCGGGGAAAAGCACTCTTGCCAAGGTTCTCGCCGGGCATCCGGATTACCAAGTTACAGGAGGCAGTGTTGTGTTTAAAGGTGACAACTTGCTCGAAATGGCAGCAGAAGACCGGTCACTGGCCGGGCTTTTTATGAGTTTCCAGTCCCCAGTTGAGATCCCCGGTTTCTATGCTTATATATTTCCCAAACTTGATCTTGTCAACATGAAGACCGACTTCCTTAATCGAAATGTTAATGAAGGCTTTAGTGGAGGTGAAAAGAAGCGCAATGAGATTTTGCAACTGGCGGTTTTGGGAGCAGAGTTGGCCATATTGGATGAAATTGATTCTGGATTGGATGTCGATGCGCTACGAGATGTAGCAAAGGCAGTCAATGGGCTTCTGACTCCGACAAATTCTGTATTGATGATTACTCATTATCTACGACTTCTGGAATTTATAAAGCCAACATGTATCCATATTATGGAGGATGGGAAAATTATAAAGACAGGTGACATCTCCTTAGCAGAAGTGCTAGAGAAGGAAGGCTCATGCCTCGGGTTCACTTTCCAAGATGAGAATGTCATGCAAGAGAACACTGGACACAAGCTCAGATGTAGTATTGCTGAAACTGCTTCAGGATTTGATTCGGGGAAAAGCGGGTGCAGGAGTAATGATCTCTTCCCGAAAAACCATAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0015399 GO:0015405 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

356

Amino Acids

38.33

Weight (kDa)

6.52

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	108 - 235	1.7e-18	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10670
fragaria_vesca	FvH4_4g11580
malus_domestica	MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis	pycom02g22330
rosa_chinensis	RchiOBHm_Chr6g0244501
rosa_laevigata	RLG00000015353
rosa_multiflora	Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii	Rroxscaffold_7G00215790
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana	Rw6G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	824, 866
AarI	CACCTGC	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	174
AccB7I	CCANNNNNTGG	1 cut(s)	847
AccI	GTMKAC	1 cut(s)	345
AccII	CGCG	2 cut(s)	13, 227
AccIII	TCCGGA	1 cut(s)	424
AclWI	GGATC	2 cut(s)	291, 535
AcoI	YGGCCR	4 cut(s)	222, 291, 504, 690
AcsI	RAATTY	2 cut(s)	778, 818
AcuI	CTGAAG	1 cut(s)	984
AcyI	GRCGYC	1 cut(s)	330
AfiI	CCNNNNNNNGG	4 cut(s)	220, 355, 502, 847
AflIII	ACRYGT	1 cut(s)	833
AgeI	ACCGGT	1 cut(s)	495
AgsI	TTSAA	1 cut(s)	237
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	4 cut(s)	99, 265, 316, 973
AluI	AGCT	4 cut(s)	99, 265, 316, 973
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	2 cut(s)	291, 535
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	920
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	4 cut(s)	222, 291, 504, 690
ApeKI	GCWGC	5 cut(s)	77, 96, 210, 265, 485
ApoI	RAATTY	2 cut(s)	778, 818
AsiGI	ACCGGT	1 cut(s)	495
AspLEI	GCGC	3 cut(s)	7, 651, 733
AsuC2I	CCSGG	3 cut(s)	418, 508, 546
AsuHPI	GGTGA	6 cut(s)	96, 208, 214, 476, 650, 887
AvaI	CYCGRG	1 cut(s)	920
BalI	TGGCCA	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	498, 599
BbvI	GCAGC	5 cut(s)	64, 108, 222, 252, 497
BccI	CCATC	2 cut(s)	64, 848
BceAI	ACGGC	3 cut(s)	207, 278, 306
BciVI	GTATCC	1 cut(s)	848
BcnI	CCSGG	3 cut(s)	418, 508, 546
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	899
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	848
BisI	GCNGC	7 cut(s)	65, 78, 97, 211, 225, 266, 486
BlsI	GCNGC	7 cut(s)	66, 79, 98, 212, 226, 267, 487
Bme1390I	CCNGG	3 cut(s)	418, 508, 546
BmeT110I	CYCGRG	1 cut(s)	920
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	3 cut(s)	418, 508, 546
BmrI	ACTGGG	2 cut(s)	113, 527
BmsI	GCATC	2 cut(s)	430, 718
BmuI	ACTGGG	2 cut(s)	113, 527
BpiI	GAAGAC	2 cut(s)	498, 599
Bpu10I	CCTNAGC	1 cut(s)	886
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	3 cut(s)	418, 508, 546
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	5 cut(s)	225, 349, 405, 544, 919
BsaWI	WCCGGW	2 cut(s)	424, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	4 cut(s)	220, 355, 502, 847
Bse118I	RCCGGY	2 cut(s)	171, 495
Bse1I	ACTGG	6 cut(s)	119, 507, 526, 533, 672, 967
Bse3DI	GCAATG	1 cut(s)	658
BseAI	TCCGGA	1 cut(s)	424
BseDI	CCNNGG	5 cut(s)	225, 349, 405, 544, 919
BseGI	GGATG	6 cut(s)	22, 56, 421, 706, 727, 859
BseLI	CCNNNNNNNGG	4 cut(s)	220, 355, 502, 847
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	1 cut(s)	988
BseNI	ACTGG	6 cut(s)	119, 507, 526, 533, 672, 967
BseRI	GAGGAG	1 cut(s)	131
BseX3I	CGGCCG	2 cut(s)	222, 291
BseXI	GCAGC	5 cut(s)	64, 108, 222, 252, 497
BsgI	GTGCAG	1 cut(s)	1048
Bsh1236I	CGCG	2 cut(s)	13, 227
Bsh1285I	CGRYCG	2 cut(s)	225, 294
BshFI	GGCC	4 cut(s)	224, 293, 506, 692
BshNI	GGYRCC	1 cut(s)	174
BshTI	ACCGGT	1 cut(s)	495
BsiEI	CGRYCG	2 cut(s)	225, 294
BsiHKCI	CYCGRG	1 cut(s)	920
BsiSI	CCGG	6 cut(s)	172, 417, 425, 496, 507, 546
BslFI	GGGAC	2 cut(s)	100, 514
BslI	CCNNNNNNNGG	4 cut(s)	220, 355, 502, 847
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	2 cut(s)	100, 514
BsnI	GGCC	4 cut(s)	224, 293, 506, 692
Bso31I	GGTCTC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	920
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	4 cut(s)	283, 540, 577, 1039
Bsp68I	TCGCGA	1 cut(s)	13
BspANI	GGCC	4 cut(s)	224, 293, 506, 692
BspCNI	CTCAG	1 cut(s)	987
BspEI	TCCGGA	1 cut(s)	424
BspFNI	CGCG	2 cut(s)	13, 227
BspLI	GGNNCC	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	2 cut(s)	291, 535
BspT107I	GGYRCC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	658
BsrFI	RCCGGY	2 cut(s)	171, 495
BsrI	ACTGG	6 cut(s)	119, 507, 526, 533, 672, 967
BssAI	RCCGGY	2 cut(s)	171, 495
BssECI	CCNNGG	5 cut(s)	225, 349, 405, 544, 919
BssMI	GATC	4 cut(s)	283, 540, 577, 1039
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	2 cut(s)	349, 405
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	3 cut(s)	45, 223, 1049
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	886, 974
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	6 cut(s)	22, 56, 421, 706, 727, 859
BstFNI	CGCG	2 cut(s)	13, 227
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 651, 733
BstKTI	GATC	4 cut(s)	286, 543, 580, 1042
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	4 cut(s)	283, 540, 577, 1039
BstMCI	CGRYCG	2 cut(s)	225, 294
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 299, 689, 995
BstNSI	RCATGY	1 cut(s)	837
BstSCI	CCNGG	3 cut(s)	416, 506, 544
BstUI	CGCG	2 cut(s)	13, 227
BstV1I	GCAGC	5 cut(s)	64, 108, 222, 252, 497
BstV2I	GAAGAC	2 cut(s)	498, 599
BstX2I	RGATCY	2 cut(s)	283, 540
BstYI	RGATCY	2 cut(s)	283, 540
BstZI	CGGCCG	2 cut(s)	222, 291
BsuI	GTATCC	1 cut(s)	848
BsuRI	GGCC	4 cut(s)	224, 293, 506, 692
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	6 cut(s)	22, 56, 421, 706, 727, 859
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	3 cut(s)	454, 500, 960
BtuMI	TCGCGA	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	158
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	3 cut(s)	7, 651, 733
Cfr10I	RCCGGY	2 cut(s)	171, 495
Cfr42I	CCGCGG	1 cut(s)	228
CseI	GACGC	1 cut(s)	319
CspAI	ACCGGT	1 cut(s)	495
CviAII	CATG	5 cut(s)	362, 589, 834, 915, 949
DdeI	CTNAG	2 cut(s)	886, 974
DpnI	GATC	4 cut(s)	285, 542, 579, 1041
DpnII	GATC	4 cut(s)	283, 540, 577, 1039
DraI	TTTAAA	1 cut(s)	460
EaeI	YGGCCR	4 cut(s)	222, 291, 504, 690
EagI	CGGCCG	2 cut(s)	222, 291
Eam1104I	CTCTTC	3 cut(s)	45, 223, 1049
EarI	CTCTTC	3 cut(s)	45, 223, 1049
EciI	GGCGGA	1 cut(s)	134
EclXI	CGGCCG	2 cut(s)	222, 291
Eco130I	CCWWGG	2 cut(s)	349, 405
Eco31I	GGTCTC	1 cut(s)	189
Eco52I	CGGCCG	2 cut(s)	222, 291
Eco57I	CTGAAG	1 cut(s)	984
Eco88I	CYCGRG	1 cut(s)	920
EcoT14I	CCWWGG	2 cut(s)	349, 405
ErhI	CCWWGG	2 cut(s)	349, 405
FaeI	CATG	5 cut(s)	365, 592, 837, 918, 952
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FaqI	GGGAC	2 cut(s)	100, 514
FatI	CATG	5 cut(s)	361, 588, 833, 914, 948
FauI	CCCGC	2 cut(s)	69, 1016
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	7 cut(s)	65, 78, 97, 211, 225, 266, 486
FokI	GGATG	6 cut(s)	9, 43, 408, 713, 734, 866
Fsp4HI	GCNGC	7 cut(s)	65, 78, 97, 211, 225, 266, 486
FspBI	CTAG	1 cut(s)	899
GlaI	GCGC	3 cut(s)	6, 650, 732
GluI	GCNGC	7 cut(s)	65, 78, 97, 211, 225, 266, 486
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	224, 293, 506, 692
HapII	CCGG	6 cut(s)	172, 417, 425, 496, 507, 546
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	3 cut(s)	7, 651, 733
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	5 cut(s)	365, 592, 837, 918, 952
Hin6I	GCGC	3 cut(s)	5, 649, 731
HinP1I	GCGC	3 cut(s)	5, 649, 731
HincII	GTYRAC	2 cut(s)	334, 586
HindII	GTYRAC	2 cut(s)	334, 586
HinfI	GANTC	5 cut(s)	305, 319, 710, 769, 1010
HpaII	CCGG	6 cut(s)	172, 417, 425, 496, 507, 546
HphI	GGTGA	6 cut(s)	96, 208, 214, 476, 650, 887
Hpy166II	GTNNAC	4 cut(s)	334, 346, 586, 927
Hpy188I	TCNGA	4 cut(s)	189, 768, 774, 977
Hpy188III	TCNNGA	6 cut(s)	12, 425, 714, 815, 1002, 1048
Hpy8I	GTNNAC	4 cut(s)	334, 346, 586, 927
HpyAV	CCTTC	7 cut(s)	193, 245, 253, 274, 617, 898, 902
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4V	TGCA	4 cut(s)	365, 664, 952, 1029
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 299, 689, 995
HpyF3I	CTNAG	2 cut(s)	886, 974
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	5 cut(s)	365, 592, 837, 918, 952
HspAI	GCGC	3 cut(s)	5, 649, 731
Kpn2I	TCCGGA	1 cut(s)	424
KspI	CCGCGG	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	283, 540, 577, 1039
LmnI	GCTCC	2 cut(s)	262, 680
Lsp1109I	GCAGC	5 cut(s)	64, 108, 222, 252, 497
LweI	GCATC	2 cut(s)	430, 718
MaeI	CTAG	1 cut(s)	899
MaeIII	GTNAC	4 cut(s)	436, 464, 498, 875
MalI	GATC	4 cut(s)	285, 542, 579, 1041
MboI	GATC	4 cut(s)	283, 540, 577, 1039
MboII	GAAGA	6 cut(s)	32, 63, 210, 503, 604, 1036
MflI	RGATCY	2 cut(s)	283, 540
MlsI	TGGCCA	1 cut(s)	692
MluCI	AATT	6 cut(s)	237, 366, 705, 778, 818, 861
MluNI	TGGCCA	1 cut(s)	692
MlyI	GAGTC	1 cut(s)	763
MmeI	TCCRAC	1 cut(s)	797
Mox20I	TGGCCA	1 cut(s)	692
MroI	TCCGGA	1 cut(s)	424
MscI	TGGCCA	1 cut(s)	692
MseI	TTAA	3 cut(s)	459, 606, 618
Msp20I	TGGCCA	1 cut(s)	692
MspA1I	CMGCKG	3 cut(s)	156, 227, 316
MspI	CCGG	6 cut(s)	172, 417, 425, 496, 507, 546
MspR9I	CCNGG	3 cut(s)	418, 508, 546
MvnI	CGCG	2 cut(s)	13, 227
MwoI	GCNNNNNNNGC	4 cut(s)	153, 299, 689, 995
NciI	CCSGG	3 cut(s)	418, 508, 546
NdeII	GATC	4 cut(s)	283, 540, 577, 1039
NlaIII	CATG	5 cut(s)	365, 592, 837, 918, 952
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	3 cut(s)	464, 498, 875
NruI	TCGCGA	1 cut(s)	13
NspI	RCATGY	1 cut(s)	837
PaqCI	CACCTGC	1 cut(s)	186
PciI	ACATGT	1 cut(s)	833
PfeI	GAWTC	4 cut(s)	305, 319, 710, 1010
PflMI	CCANNNNNTGG	1 cut(s)	847
PinAI	ACCGGT	1 cut(s)	495
PkrI	GCNGC	7 cut(s)	66, 79, 98, 212, 226, 267, 487
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PscI	ACATGT	1 cut(s)	833
PsiI	TTATAA	2 cut(s)	824, 866
PspN4I	GGNNCC	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	283, 540
PvuII	CAGCTG	1 cut(s)	316
RruI	TCGCGA	1 cut(s)	13
SacII	CCGCGG	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	459, 606, 618
SatI	GCNGC	7 cut(s)	65, 78, 97, 211, 225, 266, 486
Sau3AI	GATC	4 cut(s)	283, 540, 577, 1039
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	3 cut(s)	418, 508, 546
SfaNI	GCATC	2 cut(s)	430, 718
Sfr303I	CCGCGG	1 cut(s)	228
SgrBI	CCGCGG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	6 cut(s)	237, 366, 705, 778, 818, 861
SspMI	CTAG	1 cut(s)	899
StyD4I	CCNGG	3 cut(s)	416, 506, 544
StyI	CCWWGG	2 cut(s)	349, 405
TaaI	ACNGT	1 cut(s)	383
TaqI	TCGA	4 cut(s)	273, 477, 610, 726
TaqII	GACCGA	1 cut(s)	611
TasI	AATT	6 cut(s)	237, 366, 705, 778, 818, 861
TauI	GCSGC	2 cut(s)	67, 227
TfiI	GAWTC	4 cut(s)	305, 319, 710, 1010
Tru1I	TTAA	3 cut(s)	459, 606, 618
Tru9I	TTAA	3 cut(s)	459, 606, 618
TscAI	CASTG	3 cut(s)	454, 507, 967
TseFI	GTSAC	3 cut(s)	464, 498, 875
TseI	GCWGC	5 cut(s)	77, 96, 210, 265, 485
Tsp45I	GTSAC	3 cut(s)	464, 498, 875
TspDTI	ATGAA	4 cut(s)	350, 605, 636, 717
TspRI	CASTG	3 cut(s)	454, 507, 967
Van91I	CCANNNNNTGG	1 cut(s)	847
XapI	RAATTY	2 cut(s)	778, 818
XceI	RCATGY	1 cut(s)	837
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.