Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014298

Physical Location & Seq

Genomic Coordinates Reverse (-)

15295243 .. 15297751

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCCCTCACTGTCCCCTCACCGCCATCACCACAACTCTCTCCTCTTTCTCTCCGACCTTCAGCCTCCAATTCCCTCCAATTTACACTCGGGGCCGCCCCTCCCCGCGCTCTCCTCCGCTGTTCCCGCCCAAACCGCGCCAGCCTCTCCTCCGCCGTCGACTCTCCGCCGCATACTTCCGGGAGTCAACCCGAGAAGAAGCTCATCCTCCAAGTCAAGGACCTCACCGCCGTGATTGCCGAATCCAAGCAGCAGATTCTCAAGGGCGTCAACCTCACCGTCTACGAAGGTGAGGTTCACGCCGTCATGGGCAAGAACGGCTCCGGCAAAAGCACTTTCGCCAAGGTTCTGGTGGGGCATCCGGACTACGAGGTCACCGGAGGTAGTGTGGTGTTTAAAGGGCAGGACTTGCTGGAGATGGAAGCCGACGAGAGGTCTTTGGCCGGACTTTTTATGAGCTTTCAGTCGCCGGTTGAAATCCCAGGTGTGAGCAATATCAATTTTCTTCGCATGGCATACAATGCCAAGAGAGCGAAGCTTGGACTGCCTGAGCTTGGAGTGTTTGAGTTTTATGCTTATTTGTATCCCAAACTTGAACTTGTCAACATGAAGACGGATTTTCTTGATAGGAATGTCAATGAGGGCTTTAGCGGTGGTGAAAAGAAGCGCAACGAGATTTTACAACTGGCGGTTTTGGGGGCAGAACTGGCTTTATTGGATGAGATTGATTCTGGCTTGGATGTTGATGCATTCCAAGATGTAGCAAAGGCAGTGAATGGGCTTTTGACTCCAACAAATTCTGTGTTGCTGATTACTCATTATATACGACTTCTACAACTTATAAAGCCAACACGCATCCACATTATGGAGAATGGGAAGATTGTGAAGACAGGTGACATCTCTTTAGCAGAGGCACTAGAGAAGGATGGATACGAAGCAATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0015399 GO:0015405 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

316

Amino Acids

34.07

Weight (kDa)

6.02

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	87 - 241	3.7e-20	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10670
fragaria_vesca	FvH4_4g11580
malus_domestica	MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis	pycom02g22330
rosa_chinensis	RchiOBHm_Chr6g0244501
rosa_laevigata	RLG00000015353
rosa_multiflora	Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii	Rroxscaffold_7G00215790
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana	Rw6G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	842
AasI	GACNNNNNNGTC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	865
AccI	GTMKAC	2 cut(s)	159, 282
AccII	CGCG	2 cut(s)	108, 138
AccIII	TCCGGA	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	796
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	267
AfiI	CCNNNNNNNGG	4 cut(s)	217, 432, 554, 865
AgsI	TTSAA	2 cut(s)	476, 596
AhdI	GACNNNNNGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	481
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	4 cut(s)	202, 459, 538, 553
AluI	AGCT	4 cut(s)	202, 459, 538, 553
Ama87I	CYCGRG	2 cut(s)	89, 191
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	3 cut(s)	3, 93, 441
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	796
AspLEI	GCGC	3 cut(s)	110, 140, 669
AspS9I	GGNCC	3 cut(s)	4, 93, 220
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	8 cut(s)	12, 21, 217, 268, 302, 367, 668, 905
AvaI	CYCGRG	2 cut(s)	89, 191
AvaII	GGWCC	1 cut(s)	220
BarI	GAAGNNNNNNTAC	2 cut(s)	914, 946
BbsI	GAAGAC	2 cut(s)	617, 893
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	3 cut(s)	34, 412, 920
BceAI	ACGGC	4 cut(s)	140, 215, 287, 334
BcgI	CGANNNNNNTGC	1 cut(s)	923
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	2 cut(s)	594, 923
BcnI	CCSGG	1 cut(s)	181
BfaI	CTAG	1 cut(s)	917
BfuI	GTATCC	2 cut(s)	594, 923
BisI	GCNGC	3 cut(s)	96, 170, 251
BlsI	GCNGC	3 cut(s)	97, 171, 252
Bme1390I	CCNGG	2 cut(s)	181, 483
Bme18I	GGWCC	1 cut(s)	220
BmeRI	GACNNNNNGTC	1 cut(s)	433
BmeT110I	CYCGRG	2 cut(s)	89, 191
BmgT120I	GGNCC	3 cut(s)	4, 93, 220
BmiI	GGNNCC	2 cut(s)	94, 322
BmrFI	CCNGG	2 cut(s)	181, 483
BmsI	GCATC	3 cut(s)	367, 736, 864
BpiI	GAAGAC	2 cut(s)	617, 893
BpmI	CTGGAG	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	181
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	342, 481
BsaWI	WCCGGW	2 cut(s)	361, 377
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 432, 554, 865
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	690, 711
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	342, 481
BseGI	GGATG	6 cut(s)	204, 358, 724, 745, 855, 931
BseLI	CCNNNNNNNGG	4 cut(s)	217, 432, 554, 865
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	2 cut(s)	690, 711
BseRI	GAGGAG	3 cut(s)	33, 104, 139
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	2 cut(s)	108, 138
BshFI	GGCC	3 cut(s)	5, 95, 443
BsiHKCI	CYCGRG	2 cut(s)	89, 191
BsiSI	CCGG	6 cut(s)	180, 324, 362, 378, 444, 470
BslI	CCNNNNNNNGG	4 cut(s)	217, 432, 554, 865
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	3 cut(s)	5, 95, 443
BsoBI	CYCGRG	2 cut(s)	89, 191
Bsp13I	TCCGGA	1 cut(s)	361
BspANI	GGCC	3 cut(s)	5, 95, 443
BspCNI	CTCAG	1 cut(s)	541
BspEI	TCCGGA	1 cut(s)	361
BspFNI	CGCG	2 cut(s)	108, 138
BspLI	GGNNCC	2 cut(s)	94, 322
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	690, 711
BssAI	RCCGGY	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	342, 481
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	13, 280
BstACI	GRCGYC	1 cut(s)	267
BstAPI	GCANNNNNTGC	2 cut(s)	409, 521
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	549
BstEII	GGTNACC	1 cut(s)	373
BstF5I	GGATG	6 cut(s)	204, 358, 724, 745, 855, 931
BstFNI	CGCG	2 cut(s)	108, 138
BstHHI	GCGC	3 cut(s)	110, 140, 669
BstMWI	GCNNNNNNNGC	9 cut(s)	126, 135, 236, 318, 409, 521, 530, 544, 707
BstNI	CCWGG	1 cut(s)	483
BstPI	GGTNACC	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	179, 481
BstUI	CGCG	2 cut(s)	108, 138
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	2 cut(s)	617, 893
BstXI	CCANNNNNNTGG	1 cut(s)	349
BsuI	GTATCC	2 cut(s)	594, 923
BsuRI	GGCC	3 cut(s)	5, 95, 443
BtsCI	GGATG	6 cut(s)	204, 358, 724, 745, 855, 931
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	2 cut(s)	9, 777
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	3 cut(s)	110, 140, 669
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	3 cut(s)	4, 93, 220
CseI	GACGC	1 cut(s)	256
CviAII	CATG	3 cut(s)	307, 511, 607
DdeI	CTNAG	1 cut(s)	549
DraI	TTTAAA	1 cut(s)	397
DrdI	GACNNNNNNGTC	1 cut(s)	371
DriI	GACNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	441
Eam1105I	GACNNNNNGTC	1 cut(s)	433
EciI	GGCGGA	2 cut(s)	142, 156
Eco130I	CCWWGG	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	45
Eco88I	CYCGRG	2 cut(s)	89, 191
Eco91I	GGTNACC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	3 cut(s)	310, 514, 610
FatI	CATG	3 cut(s)	306, 510, 606
FauI	CCCGC	2 cut(s)	113, 134
FblI	GTMKAC	2 cut(s)	159, 282
Fnu4HI	GCNGC	3 cut(s)	96, 170, 251
FokI	GGATG	6 cut(s)	191, 345, 731, 752, 842, 938
Fsp4HI	GCNGC	3 cut(s)	96, 170, 251
FspBI	CTAG	1 cut(s)	917
GlaI	GCGC	3 cut(s)	109, 139, 668
GluI	GCNGC	3 cut(s)	96, 170, 251
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	3 cut(s)	5, 95, 443
HapII	CCGG	6 cut(s)	180, 324, 362, 378, 444, 470
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	3 cut(s)	110, 140, 669
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	310, 514, 610
Hin6I	GCGC	3 cut(s)	108, 138, 667
HinP1I	GCGC	3 cut(s)	108, 138, 667
HincII	GTYRAC	4 cut(s)	160, 188, 271, 604
HindII	GTYRAC	4 cut(s)	160, 188, 271, 604
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	6 cut(s)	161, 184, 242, 256, 728, 787
HpaII	CCGG	6 cut(s)	180, 324, 362, 378, 444, 470
HphI	GGTGA	8 cut(s)	12, 21, 217, 268, 302, 367, 668, 905
Hpy166II	GTNNAC	6 cut(s)	160, 188, 271, 283, 298, 604
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	362, 623
Hpy8I	GTNNAC	6 cut(s)	160, 188, 271, 283, 298, 604
Hpy99I	CGWCG	2 cut(s)	161, 431
HpyAV	CCTTC	3 cut(s)	69, 281, 916
HpyCH4III	ACNGT	2 cut(s)	13, 280
HpyCH4V	TGCA	1 cut(s)	749
HpyF10VI	GCNNNNNNNGC	9 cut(s)	126, 135, 236, 318, 409, 521, 530, 544, 707
HpyF3I	CTNAG	1 cut(s)	549
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	310, 514, 610
HspAI	GCGC	3 cut(s)	108, 138, 667
Kpn2I	TCCGGA	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	3 cut(s)	367, 736, 864
MaeI	CTAG	1 cut(s)	917
MaeIII	GTNAC	2 cut(s)	373, 893
MboII	GAAGA	5 cut(s)	208, 497, 622, 889, 898
MfeI	CAATTG	1 cut(s)	939
MluCI	AATT	5 cut(s)	70, 80, 499, 796, 939
MlyI	GAGTC	3 cut(s)	155, 193, 781
MmeI	TCCRAC	2 cut(s)	79, 815
Mph1103I	ATGCAT	1 cut(s)	751
MroI	TCCGGA	1 cut(s)	361
MseI	TTAA	2 cut(s)	396, 946
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	6 cut(s)	180, 324, 362, 378, 444, 470
MspR9I	CCNGG	2 cut(s)	181, 483
MunI	CAATTG	1 cut(s)	939
Mva1269I	GAATGC	1 cut(s)	749
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	2 cut(s)	108, 138
MwoI	GCNNNNNNNGC	9 cut(s)	126, 135, 236, 318, 409, 521, 530, 544, 707
NciI	CCSGG	1 cut(s)	181
NlaIII	CATG	3 cut(s)	310, 514, 610
NlaIV	GGNNCC	2 cut(s)	94, 322
NmuCI	GTSAC	2 cut(s)	373, 893
NsiI	ATGCAT	1 cut(s)	751
OliI	CACNNNNGTG	1 cut(s)	230
PctI	GAATGC	1 cut(s)	749
PfeI	GAWTC	3 cut(s)	242, 256, 728
PflMI	CCANNNNNTGG	1 cut(s)	865
PfoI	TCCNGGA	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	97, 171, 252
PleI	GAGTC	3 cut(s)	155, 192, 781
PpsI	GAGTC	3 cut(s)	155, 192, 781
PpuMI	RGGWCCY	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	842
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	481
PspEI	GGTNACC	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	94, 322
PspPI	GGNCC	3 cut(s)	4, 93, 220
PspPPI	RGGWCCY	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	230
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	396, 946
SatI	GCNGC	3 cut(s)	96, 170, 251
Sau96I	GGNCC	3 cut(s)	4, 93, 220
SchI	GAGTC	3 cut(s)	155, 193, 781
ScrFI	CCNGG	2 cut(s)	181, 483
SfaNI	GCATC	3 cut(s)	367, 736, 864
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	70, 80, 499, 796, 939
SspMI	CTAG	1 cut(s)	917
StyD4I	CCNGG	2 cut(s)	179, 481
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	13, 280
TaqI	TCGA	1 cut(s)	159
TasI	AATT	5 cut(s)	70, 80, 499, 796, 939
TauI	GCSGC	2 cut(s)	98, 172
TfiI	GAWTC	3 cut(s)	242, 256, 728
Tru1I	TTAA	2 cut(s)	396, 946
Tru9I	TTAA	2 cut(s)	396, 946
TscAI	CASTG	2 cut(s)	16, 777
TseFI	GTSAC	2 cut(s)	373, 893
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	2 cut(s)	373, 893
TspDTI	ATGAA	1 cut(s)	623
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	2 cut(s)	16, 777
Van91I	CCANNNNNTGG	1 cut(s)	865
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmiI	GTMKAC	2 cut(s)	159, 282
XspI	CTAG	1 cut(s)	917
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.