Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003679.1

Orthogroup ID

OG0014298

Physical Location & Seq

Genomic Coordinates Forward (+)

59780 .. 62129

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003679.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atggccctctcgctatttcaccacccatctctcactctcccttcaccaccaccacagccctctcctccttctctccgaccttcaccctccaactccctccaatttacactccctgcccctcgccccctcctcctcctccgctcttcccgcccaaaccgccgccactcctcactccgcgccggcctctcctccgccgtctactctccgccgcagacttccggcggccaacccgagaagaagctcatcctccaagtcagagacctaaccgccgtgattgccgaatcgaagcagcagattctcaaaggcgttaacctcaccgtctacgaaggtgaggttcacgccgtcatgggcaagaacggctccggcaaaagcaccttcgccaaggttttggtggggcatccggattacgaagtcaccggaggcagcgtggtgtttaaagggcaagacttgctggaaatggaagcggatgagaggtccctcgccggactttttatgagttttcagtcgccggttgaaattccgggtgtgagcaatatcaattttcttcgtatggcgtacaatgctaagagagagaagcttggattgcctgagcttggagtatttgagttctatgcttatttgtatccgaaacttgaacttgtgaacatgaagacggattttcttgatagaaatgttaatgaaggctttagcggtggtgaaaagaagcgcaatgagattttacaattggcggttttgggggcagaattggctttattggatgaaattgattctggcctggatgttgacgcgttccaagatgtagccaaggcagtgaatgggcttctgactccaacaaattctgtgttgctaattactcattatttacgacttctacaatttataaagccaacatgcatccacattatggagaatgggaaaattgtgaagacaggtgacatctctttggcggaggcactagagaaggatggttatgaagcaattgcaaaaccacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0015399 GO:0015405 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

331

Amino Acids

36.16

Weight (kDa)

6.72

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10670
fragaria_vesca	FvH4_4g11580
malus_domestica	MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis	pycom02g22330
rosa_chinensis	RchiOBHm_Chr6g0244501
rosa_laevigata	RLG00000015353
rosa_multiflora	Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii	Rroxscaffold_7G00215790
rosa_rugosa	Rorug05G0509200
rosa_samantha	Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana	Rw6G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	881
AccB7I	CCANNNNNTGG	1 cut(s)	904
AccBSI	CCGCTC	1 cut(s)	141
AccI	GTMKAC	2 cut(s)	198, 321
AccII	CGCG	2 cut(s)	177, 788
AccIII	TCCGGA	1 cut(s)	400
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	2 cut(s)	516, 835
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	2 cut(s)	593, 904
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	2 cut(s)	515, 635
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	3 cut(s)	241, 577, 592
AluI	AGCT	3 cut(s)	241, 577, 592
Alw26I	GTCTC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	4 cut(s)	3, 181, 223, 772
ApeKI	GCWGC	2 cut(s)	289, 423
ApoI	RAATTY	2 cut(s)	516, 835
AspLEI	GCGC	2 cut(s)	179, 708
AspS9I	GGNCC	2 cut(s)	4, 474
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	8 cut(s)	11, 36, 75, 307, 341, 406, 707, 944
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	474
BbsI	GAAGAC	2 cut(s)	656, 932
BbvI	GCAGC	2 cut(s)	301, 435
BccI	CCATC	2 cut(s)	34, 959
BceAI	ACGGC	4 cut(s)	179, 254, 326, 373
BciT130I	CCWGG	1 cut(s)	776
BciVI	GTATCC	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	956
BfuI	GTATCC	1 cut(s)	633
BisI	GCNGC	5 cut(s)	160, 209, 223, 290, 424
BlsI	GCNGC	5 cut(s)	161, 210, 224, 291, 425
Bme1390I	CCNGG	2 cut(s)	522, 776
Bme18I	GGWCC	1 cut(s)	474
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	4, 474
BmiI	GGNNCC	2 cut(s)	361, 476
BmrFI	CCNGG	2 cut(s)	522, 776
BmsI	GCATC	2 cut(s)	406, 903
BpiI	GAAGAC	2 cut(s)	656, 932
Bpu10I	CCTNAGC	1 cut(s)	588
BpuMI	CCSGG	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	381, 804
BsaWI	WCCGGW	2 cut(s)	400, 416
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	593, 904
Bse118I	RCCGGY	2 cut(s)	179, 508
Bse3DI	GCAATG	1 cut(s)	715
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	2 cut(s)	381, 804
BseGI	GGATG	7 cut(s)	243, 397, 472, 763, 784, 894, 970
BseLI	CCNNNNNNNGG	2 cut(s)	593, 904
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	1 cut(s)	579
BseRI	GAGGAG	6 cut(s)	54, 119, 122, 125, 157, 178
BseXI	GCAGC	2 cut(s)	301, 435
Bsh1236I	CGCG	2 cut(s)	177, 788
BshFI	GGCC	4 cut(s)	5, 183, 225, 774
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	8 cut(s)	180, 219, 363, 401, 417, 483, 509, 521
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	593, 904
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	4 cut(s)	5, 183, 225, 774
Bso31I	GGTCTC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	230
Bsp13I	TCCGGA	1 cut(s)	400
BspANI	GGCC	4 cut(s)	5, 183, 225, 774
BspCNI	CTCAG	1 cut(s)	580
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	2 cut(s)	177, 788
BspLI	GGNNCC	2 cut(s)	361, 476
BspQI	GCTCTTC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	252
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	715
BsrFI	RCCGGY	2 cut(s)	179, 508
BssAI	RCCGGY	2 cut(s)	179, 508
BssECI	CCNNGG	2 cut(s)	381, 804
BssT1I	CCWWGG	2 cut(s)	381, 804
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	564, 588
BstF5I	GGATG	7 cut(s)	243, 397, 472, 763, 784, 894, 970
BstFNI	CGCG	2 cut(s)	177, 788
BstHHI	GCGC	2 cut(s)	179, 708
BstMAI	GTCTC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	8 cut(s)	147, 156, 275, 357, 448, 560, 583, 746
BstNI	CCWGG	1 cut(s)	776
BstNSI	RCATGY	1 cut(s)	894
BstSCI	CCNGG	2 cut(s)	520, 774
BstUI	CGCG	2 cut(s)	177, 788
BstV1I	GCAGC	2 cut(s)	301, 435
BstV2I	GAAGAC	2 cut(s)	656, 932
BstXI	CCANNNNNNTGG	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	4 cut(s)	5, 183, 225, 774
BtsCI	GGATG	7 cut(s)	243, 397, 472, 763, 784, 894, 970
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	2 cut(s)	179, 708
Cfr10I	RCCGGY	2 cut(s)	179, 508
Cfr13I	GGNCC	2 cut(s)	4, 474
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	3 cut(s)	346, 646, 891
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	2 cut(s)	564, 588
DraI	TTTAAA	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
EciI	GGCGGA	3 cut(s)	181, 195, 962
Eco130I	CCWWGG	2 cut(s)	381, 804
Eco31I	GGTCTC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	774
EcoT14I	CCWWGG	2 cut(s)	381, 804
EcoT22I	ATGCAT	1 cut(s)	896
ErhI	CCWWGG	2 cut(s)	381, 804
FaeI	CATG	3 cut(s)	349, 649, 894
FaiI	YATR	9 cut(s)	347, 494, 551, 612, 647, 881, 892, 905, 972
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	3 cut(s)	345, 645, 890
FauI	CCCGC	1 cut(s)	155
FblI	GTMKAC	2 cut(s)	198, 321
Fnu4HI	GCNGC	5 cut(s)	160, 209, 223, 290, 424
FokI	GGATG	7 cut(s)	230, 384, 479, 770, 791, 881, 977
Fsp4HI	GCNGC	5 cut(s)	160, 209, 223, 290, 424
FspBI	CTAG	1 cut(s)	956
GlaI	GCGC	2 cut(s)	178, 707
GluI	GCNGC	5 cut(s)	160, 209, 223, 290, 424
HaeIII	GGCC	4 cut(s)	5, 183, 225, 774
HapII	CCGG	8 cut(s)	180, 219, 363, 401, 417, 483, 509, 521
HgaI	GACGC	1 cut(s)	794
HhaI	GCGC	2 cut(s)	179, 708
Hin1II	CATG	3 cut(s)	349, 649, 894
Hin6I	GCGC	2 cut(s)	177, 706
HinP1I	GCGC	2 cut(s)	177, 706
HincII	GTYRAC	2 cut(s)	310, 784
HindII	GTYRAC	2 cut(s)	310, 784
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	4 cut(s)	281, 295, 767, 826
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	8 cut(s)	180, 219, 363, 401, 417, 483, 509, 521
HphI	GGTGA	8 cut(s)	11, 36, 75, 307, 341, 406, 707, 944
Hpy166II	GTNNAC	6 cut(s)	199, 310, 322, 337, 643, 784
Hpy188I	TCNGA	4 cut(s)	77, 257, 627, 825
Hpy188III	TCNNGA	2 cut(s)	401, 662
Hpy8I	GTNNAC	6 cut(s)	199, 310, 322, 337, 643, 784
HpyAV	CCTTC	7 cut(s)	51, 78, 90, 320, 385, 674, 955
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	894, 983
HpyF10VI	GCNNNNNNNGC	8 cut(s)	147, 156, 275, 357, 448, 560, 583, 746
HpyF3I	CTNAG	2 cut(s)	564, 588
Hsp92II	CATG	3 cut(s)	349, 649, 894
HspAI	GCGC	2 cut(s)	177, 706
Kpn2I	TCCGGA	1 cut(s)	400
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
KspAI	GTTAAC	1 cut(s)	310
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	2 cut(s)	301, 435
LweI	GCATC	2 cut(s)	406, 903
MaeI	CTAG	1 cut(s)	956
MaeIII	GTNAC	2 cut(s)	412, 932
MbiI	CCGCTC	1 cut(s)	141
MboII	GAAGA	5 cut(s)	135, 247, 536, 661, 937
MfeI	CAATTG	2 cut(s)	722, 978
MluI	ACGCGT	1 cut(s)	786
MlyI	GAGTC	1 cut(s)	820
MmeI	TCCRAC	3 cut(s)	100, 114, 854
Mph1103I	ATGCAT	1 cut(s)	896
MroI	TCCGGA	1 cut(s)	400
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	4 cut(s)	309, 435, 675, 994
MspI	CCGG	8 cut(s)	180, 219, 363, 401, 417, 483, 509, 521
MspR9I	CCNGG	2 cut(s)	522, 776
MunI	CAATTG	2 cut(s)	722, 978
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	2 cut(s)	177, 788
MwoI	GCNNNNNNNGC	8 cut(s)	147, 156, 275, 357, 448, 560, 583, 746
NaeI	GCCGGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	522
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	3 cut(s)	349, 649, 894
NlaIV	GGNNCC	2 cut(s)	361, 476
NmuCI	GTSAC	2 cut(s)	412, 932
NsiI	ATGCAT	1 cut(s)	896
NspI	RCATGY	1 cut(s)	894
PciSI	GCTCTTC	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	281, 295, 767
PflMI	CCANNNNNTGG	1 cut(s)	904
PkrI	GCNGC	5 cut(s)	161, 210, 224, 291, 425
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
PpuMI	RGGWCCY	1 cut(s)	474
PsiI	TTATAA	1 cut(s)	881
Psp5II	RGGWCCY	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	2 cut(s)	361, 476
PspPI	GGNCC	2 cut(s)	4, 474
PspPPI	RGGWCCY	1 cut(s)	474
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	4 cut(s)	309, 435, 675, 994
SatI	GCNGC	5 cut(s)	160, 209, 223, 290, 424
Sau96I	GGNCC	2 cut(s)	4, 474
SchI	GAGTC	1 cut(s)	820
ScrFI	CCNGG	2 cut(s)	522, 776
SfaNI	GCATC	2 cut(s)	406, 903
SinI	GGWCC	1 cut(s)	474
SspMI	CTAG	1 cut(s)	956
StyD4I	CCNGG	2 cut(s)	520, 774
StyI	CCWWGG	2 cut(s)	381, 804
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	284
TauI	GCSGC	3 cut(s)	162, 211, 225
TfiI	GAWTC	3 cut(s)	281, 295, 767
Tru1I	TTAA	4 cut(s)	309, 435, 675, 994
Tru9I	TTAA	4 cut(s)	309, 435, 675, 994
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	2 cut(s)	412, 932
TseI	GCWGC	2 cut(s)	289, 423
Tsp45I	GTSAC	2 cut(s)	412, 932
TspDTI	ATGAA	4 cut(s)	662, 693, 774, 987
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	1 cut(s)	816
Van91I	CCANNNNNTGG	1 cut(s)	904
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	2 cut(s)	516, 835
XceI	RCATGY	1 cut(s)	894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	2 cut(s)	198, 321
XspI	CTAG	1 cut(s)	956
Zsp2I	ATGCAT	1 cut(s)	896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.