AT3G10870

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012379
Physical Location & Seq
Reverse (-)
3400824 .. 3402776
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10870.1

Sequence Viewer

Length: 831 bp
ATGGCGGAGGAGAATCAAGAAGAAACCCTAGAACTCAAACCAAGTAGAAAACCACCACACTTTGTGCTAATACATGGCATGAGCTTAGGATCATGGTGCTGGTACAAGATCAAATGTCTCATGGAAGTCTCTGGCTTCACCGTCACTTGCATCGACCTCAAATCCTCCGGCATCGATTCTTCATCCGTGGATTCACTCACTACCTTCGACCAATACAACCAACCACTCATCGACTTCCTCTCCTCTTTCCCCGAACAAGAACAGGTGATACTTGTGGGTCACAGTGCAGGAGGGCTTAGCCTAACGAGTGCGATACAGAGATTCCCTAAGAAGATCTGTCTCGCTGTTTTTATTGGAGCTTCGATGCTCAAAAACGGGCTTCAGACAGATGAAGATATGAAAGATGGAGTGCCTGATCTATCAGAACATGGTGATGTCTACGAGCTTGGTTTTGGTCTAGGACCGGAGAATCCTCCCACCAGTGCTATTATCAAACCTGAATACCGACGAAAACTACTTTACCACATGAGTCCTCAACAGGAATGTTCCTTGGCTGCATTAATGATGAGACCAGCACCAATTTTGGCGTTAACGACAGCAAAACTGGAAGAAGAGGAAAAAGAAAAAGGACAAGAGGAGCAAGTGCCGCGCGTGTACATCAAGACGTTACTCGACCGGGTCATGAAACCGGAGCAGCAAGACGCGATGATAAGACGGTGGCCACCTAGCCAAGTTTACGAATTGGAGAGCGACCATTCTCCTTTCTTCTCTAACCCTTTTGTTCTCTTTGGTTTACTCATCAAAGCTGCCGTTTCCGTCGGTTCTATCTAA

Protein Analysis

276

Amino Acids

30.87

Weight (kDa)

5.08

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 19 - 257 2.4e-12 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 21 - 259 2.9e-14 Alpha/beta hydrolase family
Hydrolase_4 PF12146 21 - 122 2.6e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10870
fragaria_vesca FvH4_7g26180
malus_domestica MD01G1170100.v1.1 MD07G1237000.v1.1 MD11G1052400.v1.1
prunus_persica Prupe.2G266100_v2.0.a1
pyrus_communis pycom01g18280 pycom07g21330
rosa_chinensis RchiOBHm_Chr1g0372631
rosa_laevigata RLG00000026885
rosa_multiflora Rmu_sc0008757.1_g000010 Rmu_ssc0000419.1_g000007
rosa_roxburghii Rroxscaffold_4G00284810
rosa_rugosa Rorug01G0373400
rosa_samantha Rh1AG381900 Rh1BG345300 Rh1CG358700 Rh1DG376500
rosa_wichuraiana Rw1G033590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 438
AccII CGCG 3 cut(s) 649, 651, 704
AciI CCGC 2 cut(s) 5, 647
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 719
AcuI CTGAAG 1 cut(s) 365
AdeI CACNNNGTG 1 cut(s) 64
AfaI GTAC 2 cut(s) 104, 656
AluBI AGCT 4 cut(s) 84, 359, 445, 806
AluI AGCT 4 cut(s) 84, 359, 445, 806
Alw26I GTCTC 4 cut(s) 122, 133, 344, 562
AlwI GGATC 1 cut(s) 97
AoxI GGCC 1 cut(s) 719
ApeKI GCWGC 3 cut(s) 554, 694, 806
AseI ATTAAT 1 cut(s) 560
AspLEI GCGC 1 cut(s) 651
AspS9I GGNCC 1 cut(s) 461
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 3 cut(s) 130, 277, 443
AvaII GGWCC 1 cut(s) 461
BalI TGGCCA 1 cut(s) 721
BbvI GCAGC 3 cut(s) 541, 706, 793
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 794
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 4 cut(s) 122, 133, 344, 562
BfaI CTAG 3 cut(s) 29, 458, 726
BglII AGATCT 1 cut(s) 333
BisI GCNGC 4 cut(s) 555, 647, 695, 807
BlpI GCTNAGC 1 cut(s) 296
BlsI GCNGC 4 cut(s) 556, 648, 696, 808
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 461
BmrFI CCNGG 1 cut(s) 677
BmsI GCATC 3 cut(s) 159, 180, 354
Bpu10I CCTNAGC 1 cut(s) 85
Bpu1102I GCTNAGC 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 677
Bsa29I ATCGAT 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 562
BsaJI CCNNGG 2 cut(s) 186, 549
BsaWI WCCGGW 2 cut(s) 463, 688
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse1I ACTGG 2 cut(s) 480, 609
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 186, 549
BseGI GGATG 1 cut(s) 182
BseNI ACTGG 2 cut(s) 480, 609
BseRI GAGGAG 3 cut(s) 23, 232, 650
BseXI GCAGC 3 cut(s) 541, 706, 793
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 3 cut(s) 649, 651, 704
Bsh1285I CGRYCG 1 cut(s) 676
BshFI GGCC 1 cut(s) 721
BshVI ATCGAT 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 676
BsiSI CCGG 4 cut(s) 168, 464, 676, 689
BsmAI GTCTC 4 cut(s) 122, 133, 344, 562
BsnI GGCC 1 cut(s) 721
Bso31I GGTCTC 1 cut(s) 562
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 4 cut(s) 89, 108, 333, 415
Bsp1720I GCTNAGC 1 cut(s) 296
BspACI CCGC 2 cut(s) 5, 647
BspANI GGCC 1 cut(s) 721
BspDI ATCGAT 1 cut(s) 174
BspFNI CGCG 3 cut(s) 649, 651, 704
BspHI TCATGA 1 cut(s) 681
BspPI GGATC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 562
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 2 cut(s) 480, 609
BssECI CCNNGG 2 cut(s) 186, 549
BssMI GATC 4 cut(s) 89, 108, 333, 415
BssT1I CCWWGG 1 cut(s) 549
Bst4CI ACNGT 3 cut(s) 142, 284, 717
Bst6I CTCTTC 1 cut(s) 606
BstAUI TGTACA 1 cut(s) 654
BstDEI CTNAG 3 cut(s) 85, 296, 327
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 182
BstFNI CGCG 3 cut(s) 649, 651, 704
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 4 cut(s) 92, 111, 336, 418
BstMAI GTCTC 4 cut(s) 122, 133, 344, 562
BstMBI GATC 4 cut(s) 89, 108, 333, 415
BstMCI CGRYCG 1 cut(s) 676
BstMWI GCNNNNNNNGC 1 cut(s) 646
BstSCI CCNGG 1 cut(s) 675
BstUI CGCG 3 cut(s) 649, 651, 704
BstV1I GCAGC 3 cut(s) 541, 706, 793
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 1 cut(s) 721
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 719
BtsCI GGATG 1 cut(s) 182
BtsIMutI CAGTG 2 cut(s) 289, 487
CciI TCATGA 1 cut(s) 681
CfoI GCGC 1 cut(s) 651
Cfr13I GGNCC 1 cut(s) 461
ClaI ATCGAT 1 cut(s) 174
CseI GACGC 1 cut(s) 710
Csp6I GTAC 2 cut(s) 103, 655
CviAII CATG 7 cut(s) 74, 79, 93, 121, 428, 526, 682
CviQI GTAC 2 cut(s) 103, 655
DdeI CTNAG 3 cut(s) 85, 296, 327
DpnI GATC 4 cut(s) 91, 110, 335, 417
DpnII GATC 4 cut(s) 89, 108, 333, 415
DraIII CACNNNGTG 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 719
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 549
Eco31I GGTCTC 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 7 cut(s) 77, 82, 96, 124, 431, 529, 685
FaiI YATR 8 cut(s) 75, 80, 94, 122, 398, 429, 527, 683
FatI CATG 7 cut(s) 73, 78, 92, 120, 427, 525, 681
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 4 cut(s) 555, 647, 695, 807
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 4 cut(s) 555, 647, 695, 807
FspBI CTAG 3 cut(s) 29, 458, 726
GlaI GCGC 1 cut(s) 650
GluI GCNGC 4 cut(s) 555, 647, 695, 807
HaeIII GGCC 1 cut(s) 721
HapII CCGG 4 cut(s) 168, 464, 676, 689
HgaI GACGC 1 cut(s) 710
HhaI GCGC 1 cut(s) 651
Hin1II CATG 7 cut(s) 77, 82, 96, 124, 431, 529, 685
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HincII GTYRAC 1 cut(s) 591
HindII GTYRAC 1 cut(s) 591
HinfI GANTC 6 cut(s) 13, 176, 191, 321, 469, 529
HpaI GTTAAC 1 cut(s) 591
HpaII CCGG 4 cut(s) 168, 464, 676, 689
HphI GGTGA 3 cut(s) 130, 277, 443
Hpy166II GTNNAC 5 cut(s) 439, 591, 655, 736, 794
Hpy188I TCNGA 2 cut(s) 384, 424
Hpy188III TCNNGA 3 cut(s) 17, 661, 682
Hpy8I GTNNAC 5 cut(s) 439, 591, 655, 736, 794
Hpy99I CGWCG 2 cut(s) 510, 821
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 3 cut(s) 142, 284, 717
HpyCH4IV ACGT 1 cut(s) 665
HpyCH4V TGCA 3 cut(s) 150, 287, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 646
HpyF3I CTNAG 3 cut(s) 85, 296, 327
HpySE526I ACGT 1 cut(s) 665
Hsp92II CATG 7 cut(s) 77, 82, 96, 124, 431, 529, 685
HspAI GCGC 1 cut(s) 649
KspAI GTTAAC 1 cut(s) 591
Kzo9I GATC 4 cut(s) 89, 108, 333, 415
LmnI GCTCC 3 cut(s) 356, 637, 691
Lsp1109I GCAGC 3 cut(s) 541, 706, 793
LweI GCATC 3 cut(s) 159, 180, 354
MaeI CTAG 3 cut(s) 29, 458, 726
MaeII ACGT 1 cut(s) 665
MaeIII GTNAC 3 cut(s) 142, 278, 666
MalI GATC 4 cut(s) 91, 110, 335, 417
MboI GATC 4 cut(s) 89, 108, 333, 415
MboII GAAGA 7 cut(s) 32, 171, 343, 404, 620, 623, 757
MflI RGATCY 1 cut(s) 333
MlsI TGGCCA 1 cut(s) 721
MluCI AATT 2 cut(s) 579, 740
MluNI TGGCCA 1 cut(s) 721
MlyI GAGTC 1 cut(s) 538
MnlI CCTC 9 cut(s) 167, 175, 248, 253, 284, 483, 543, 607, 628
Mox20I TGGCCA 1 cut(s) 721
MscI TGGCCA 1 cut(s) 721
MseI TTAA 2 cut(s) 560, 590
MslI CAYNNNNRTG 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 721
MspI CCGG 4 cut(s) 168, 464, 676, 689
MspR9I CCNGG 1 cut(s) 677
MvnI CGCG 3 cut(s) 649, 651, 704
MwoI GCNNNNNNNGC 1 cut(s) 646
NciI CCSGG 1 cut(s) 677
NdeII GATC 4 cut(s) 89, 108, 333, 415
NlaIII CATG 7 cut(s) 77, 82, 96, 124, 431, 529, 685
NmuCI GTSAC 2 cut(s) 142, 278
PagI TCATGA 1 cut(s) 681
PfeI GAWTC 5 cut(s) 13, 176, 191, 321, 469
PflFI GACNNNGTC 1 cut(s) 677
PkrI GCNGC 4 cut(s) 556, 648, 696, 808
PleI GAGTC 1 cut(s) 537
PpsI GAGTC 1 cut(s) 537
PshBI ATTAAT 1 cut(s) 560
PspPI GGNCC 1 cut(s) 461
PsrI GAACNNNNNNTAC 2 cut(s) 252, 284
PsuI RGATCY 1 cut(s) 333
PsyI GACNNNGTC 1 cut(s) 677
RsaI GTAC 2 cut(s) 104, 656
RsaNI GTAC 2 cut(s) 103, 655
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 2 cut(s) 560, 590
SatI GCNGC 4 cut(s) 555, 647, 695, 807
Sau3AI GATC 4 cut(s) 89, 108, 333, 415
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 677
SfaNI GCATC 3 cut(s) 159, 180, 354
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 432
Sse9I AATT 2 cut(s) 579, 740
SsiI CCGC 2 cut(s) 5, 647
SspMI CTAG 3 cut(s) 29, 458, 726
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 3 cut(s) 142, 284, 717
TaiI ACGT 1 cut(s) 668
TaqI TCGA 6 cut(s) 153, 174, 207, 231, 362, 672
TasI AATT 2 cut(s) 579, 740
TatI WGTACW 1 cut(s) 654
TauI GCSGC 1 cut(s) 649
TfiI GAWTC 5 cut(s) 13, 176, 191, 321, 469
Tru1I TTAA 2 cut(s) 560, 590
Tru9I TTAA 2 cut(s) 560, 590
TscAI CASTG 2 cut(s) 289, 487
TseFI GTSAC 2 cut(s) 142, 278
TseI GCWGC 3 cut(s) 554, 694, 806
Tsp45I GTSAC 2 cut(s) 142, 278
TspDTI ATGAA 4 cut(s) 171, 405, 413, 698
TspGWI ACGGA 2 cut(s) 175, 805
TspRI CASTG 2 cut(s) 289, 487
Tth111I GACNNNGTC 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 461
VspI ATTAAT 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 3 cut(s) 29, 458, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.