Rmu_sc0008757.1_g000010

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008757.1
OG0012379
Physical Location & Seq
Forward (+)
52012 .. 52272
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008757.1_g000010.1.cds

Sequence Viewer

Length: 261 bp
atgcttttaagaccaggaccgctcctggctataacgacagcccagtttaaggaagaagacattgatgcgcttgagaaagtgccacgtgtctacgtgaagacgttgcaagatcatgtggtgaaaccggcgcagcatgattggatggtcaagaggtggccgccggctgaggtctatgtattggatagtgatcacagtcccttcttctcccagccgcttctgctctttggattccttgtaaaggctgccgaggcttctcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

86

Amino Acids

9.82

Weight (kDa)

5.83

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10870
fragaria_vesca FvH4_7g26180
malus_domestica MD01G1170100.v1.1 MD07G1237000.v1.1 MD11G1052400.v1.1
prunus_persica Prupe.2G266100_v2.0.a1
pyrus_communis pycom01g18280 pycom07g21330
rosa_chinensis RchiOBHm_Chr1g0372631
rosa_laevigata RLG00000026885
rosa_multiflora Rmu_sc0008757.1_g000010 Rmu_ssc0000419.1_g000007
rosa_roxburghii Rroxscaffold_4G00284810
rosa_rugosa Rorug01G0373400
rosa_samantha Rh1AG381900 Rh1BG345300 Rh1CG358700 Rh1DG376500
rosa_wichuraiana Rw1G033590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 90
AciI CCGC 3 cut(s) 20, 158, 212
AcoI YGGCCR 1 cut(s) 155
AcvI CACGTG 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 49, 238
AflIII ACRYGT 1 cut(s) 85
AjnI CCWGG 2 cut(s) 13, 24
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 130, 242
AspLEI GCGC 2 cut(s) 70, 130
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 17
BbrPI CACGTG 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 63, 104
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 142, 229
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 2 cut(s) 15, 26
BclI TGATCA 1 cut(s) 187
BisI GCNGC 4 cut(s) 131, 158, 212, 243
BlsI GCNGC 4 cut(s) 132, 159, 213, 244
Bme1390I CCNGG 2 cut(s) 15, 26
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmrFI CCNGG 2 cut(s) 15, 26
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 37
BpiI GAAGAC 2 cut(s) 63, 104
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 92
BsaAI YACGTR 2 cut(s) 86, 94
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 238
Bse118I RCCGGY 2 cut(s) 124, 160
Bse1I ACTGG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 2 cut(s) 15, 26
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 49, 238
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 142, 229
BseYI CCCAGC 1 cut(s) 207
BshFI GGCC 1 cut(s) 157
BsiSI CCGG 2 cut(s) 125, 161
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 49, 238
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 109, 187
BspACI CCGC 3 cut(s) 20, 158, 212
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 157
BsrBI CCGCTC 1 cut(s) 22
BsrFI RCCGGY 2 cut(s) 124, 160
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 2 cut(s) 124, 160
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 2 cut(s) 109, 187
Bst2UI CCWGG 2 cut(s) 15, 26
Bst4CI ACNGT 1 cut(s) 194
BstBAI YACGTR 2 cut(s) 86, 94
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 147
BstHHI GCGC 2 cut(s) 70, 130
BstKTI GATC 2 cut(s) 112, 190
BstMBI GATC 2 cut(s) 109, 187
BstMWI GCNNNNNNNGC 2 cut(s) 217, 248
BstNI CCWGG 2 cut(s) 15, 26
BstSCI CCNGG 2 cut(s) 13, 24
BstV1I GCAGC 2 cut(s) 142, 229
BstV2I GAAGAC 2 cut(s) 63, 104
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 2 cut(s) 70, 130
Cfr10I RCCGGY 2 cut(s) 124, 160
Cfr13I GGNCC 1 cut(s) 17
CviAII CATG 2 cut(s) 113, 134
CviJI RGCY 7 cut(s) 29, 41, 157, 164, 211, 242, 251
CviKI_1 RGCY 7 cut(s) 29, 41, 157, 164, 211, 242, 251
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 111, 189
DpnII GATC 2 cut(s) 109, 187
EaeI YGGCCR 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 17
Eco72I CACGTG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 13, 24
FaeI CATG 2 cut(s) 116, 137
FaiI YATR 4 cut(s) 32, 114, 135, 174
FaqI GGGAC 1 cut(s) 180
FatI CATG 2 cut(s) 112, 133
FbaI TGATCA 1 cut(s) 187
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 131, 158, 212, 243
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 4 cut(s) 131, 158, 212, 243
GlaI GCGC 2 cut(s) 69, 129
GluI GCNGC 4 cut(s) 131, 158, 212, 243
GsaI CCCAGC 1 cut(s) 211
HaeIII GGCC 1 cut(s) 157
HapII CCGG 2 cut(s) 125, 161
HhaI GCGC 2 cut(s) 70, 130
Hin1II CATG 2 cut(s) 116, 137
Hin6I GCGC 2 cut(s) 68, 128
HinP1I GCGC 2 cut(s) 68, 128
HinfI GANTC 1 cut(s) 228
HpaII CCGG 2 cut(s) 125, 161
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 3 cut(s) 85, 93, 101
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 248
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 3 cut(s) 85, 93, 101
Hsp92II CATG 2 cut(s) 116, 137
HspAI GCGC 2 cut(s) 68, 128
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 2 cut(s) 109, 187
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 7 cut(s) 11, 27, 38, 56, 138, 174, 221
Lsp1109I GCAGC 2 cut(s) 142, 229
LweI GCATC 1 cut(s) 55
MaeII ACGT 3 cut(s) 85, 93, 101
MalI GATC 2 cut(s) 111, 189
MbiI CCGCTC 1 cut(s) 22
MboI GATC 2 cut(s) 109, 187
MboII GAAGA 4 cut(s) 65, 68, 109, 193
MnlI CCTC 3 cut(s) 144, 160, 241
MroNI GCCGGC 1 cut(s) 160
MseI TTAA 2 cut(s) 8, 48
MspI CCGG 2 cut(s) 125, 161
MspR9I CCNGG 2 cut(s) 15, 26
MvaI CCWGG 2 cut(s) 15, 26
MwoI GCNNNNNNNGC 2 cut(s) 217, 248
NaeI GCCGGC 1 cut(s) 162
NdeII GATC 2 cut(s) 109, 187
NgoMIV GCCGGC 1 cut(s) 160
NlaIII CATG 2 cut(s) 116, 137
PdiI GCCGGC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 4 cut(s) 132, 159, 213, 244
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 2 cut(s) 86, 94
Psp6I CCWGG 2 cut(s) 13, 24
PspCI CACGTG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 2 cut(s) 13, 24
PspPI GGNCC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 8, 48
SatI GCNGC 4 cut(s) 131, 158, 212, 243
Sau3AI GATC 2 cut(s) 109, 187
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 15, 26
SetI ASST 5 cut(s) 88, 96, 104, 155, 171
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SsiI CCGC 3 cut(s) 20, 158, 212
StyD4I CCNGG 2 cut(s) 13, 24
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 3 cut(s) 88, 96, 104
TauI GCSGC 2 cut(s) 160, 214
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 2 cut(s) 8, 48
Tru9I TTAA 2 cut(s) 8, 48
TseI GCWGC 2 cut(s) 130, 242
VpaK11BI GGWCC 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.