Rroxscaffold_4G00284810

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012379
Physical Location & Seq
Reverse (-)
6331376 .. 6334754
3379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284810.1

Sequence Viewer

Length: 723 bp
ATGGAGAATTCCGGCTACAAAGTCTCCACAGTTGATCTGAAGAGCGCCGGAATCGATCCCGCAAAAGCGGATTCGGTCCTCTCTTTCGACGACTACAACAAACCACTCCTCGACTTCCTCTCTTCTCTCCCCGAACACGAACAGGTAGTTTTGGTGGGGCACAGCGCCGGAGGGTTGAGCGTGACGCTGGCGACGCTGAAGTTTCCGAAGAAGATCCGGCTGGCGGTTTATGTGGCGGCGACGATGCTGAAGCATGGGTTCACTAGTGAGGAAGATGTCAAAGATGGAGTGCCTAATTTATCCGAATTTGGTGACGTGTACGAATTAGGATTTGAATTAGGAGCCGACAAACCACCAACAAGCGGAATTGTGAAGAAAGAAGTCCAGCGCAAAATCATATATCAAATGAGTCCTCAAGAGGATTCGACACTAGCTGCCATGCTTTTGAGACCAGGACCGCTCCTAGCCATATCGACAGCCCAGTTTAAGGAAGCAGACGATGACCATGACATTGATGTGCTTGAGAAAGTGCCACGTGTCTACGTGAAGACGTTGCAAGATCATGTGGTGAAACCGGCGCAGCAAGATTCGATGGTCAAGAGGTGGCCGCCGGCCGAGGTCTATGTTTTGGATAGTGATCACAGTCCCTTCTTCTCCCAGCCGTTTCTGCTCTTTGGATTCCTTGTAAAGGCTGCCGAGGCTTCTCACTGGGAGATTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

240

Amino Acids

26.5

Weight (kDa)

5.06

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 2 - 85 1.8e-06 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 4 - 219 2.1e-11 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 6 - 221 9.4e-12 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10870
fragaria_vesca FvH4_7g26180
malus_domestica MD01G1170100.v1.1 MD07G1237000.v1.1 MD11G1052400.v1.1
prunus_persica Prupe.2G266100_v2.0.a1
pyrus_communis pycom01g18280 pycom07g21330
rosa_chinensis RchiOBHm_Chr1g0372631
rosa_laevigata RLG00000026885
rosa_multiflora Rmu_sc0008757.1_g000010 Rmu_ssc0000419.1_g000007
rosa_roxburghii Rroxscaffold_4G00284810
rosa_rugosa Rorug01G0373400
rosa_samantha Rh1AG381900 Rh1BG345300 Rh1CG358700 Rh1DG376500
rosa_wichuraiana Rw1G033590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 540
AciI CCGC 7 cut(s) 60, 68, 224, 236, 363, 458, 608
AclWI GGATC 2 cut(s) 50, 208
AcoI YGGCCR 2 cut(s) 605, 612
AcsI RAATTY 2 cut(s) 7, 305
AcuI CTGAAG 3 cut(s) 59, 218, 269
AcvI CACGTG 1 cut(s) 536
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 4 cut(s) 223, 362, 487, 688
AflIII ACRYGT 2 cut(s) 315, 535
AgsI TTSAA 1 cut(s) 335
AhlI ACTAGT 1 cut(s) 263
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw26I GTCTC 2 cut(s) 28, 442
AlwI GGATC 2 cut(s) 50, 208
AoxI GGCC 2 cut(s) 605, 612
ApeKI GCWGC 3 cut(s) 434, 580, 692
ApoI RAATTY 2 cut(s) 7, 305
AspLEI GCGC 4 cut(s) 47, 167, 390, 580
AspS9I GGNCC 2 cut(s) 76, 455
AsuHPI GGTGA 2 cut(s) 323, 580
AvaII GGWCC 2 cut(s) 76, 455
BaeGI GKGCMC 1 cut(s) 162
BbrPI CACGTG 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 554
BbvI GCAGC 3 cut(s) 421, 592, 679
BccI CCATC 2 cut(s) 278, 586
BceAI ACGGC 1 cut(s) 646
BciT130I CCWGG 1 cut(s) 453
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 2 cut(s) 28, 442
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 3 cut(s) 264, 431, 464
BfoI RGCGCY 2 cut(s) 48, 168
BisI GCNGC 5 cut(s) 237, 435, 581, 608, 693
BlsI GCNGC 5 cut(s) 238, 436, 582, 609, 694
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 2 cut(s) 76, 455
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 76, 455
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 453
BmrI ACTGGG 2 cut(s) 475, 718
BmsI GCATC 1 cut(s) 234
BmuI ACTGGG 2 cut(s) 475, 718
BpiI GAAGAC 1 cut(s) 554
BpuEI CTTGAG 2 cut(s) 399, 542
Bsa29I ATCGAT 1 cut(s) 54
BsaAI YACGTR 2 cut(s) 536, 544
BsaBI GATNNNNATC 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 2 cut(s) 615, 696
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 362, 487, 688
Bse118I RCCGGY 2 cut(s) 574, 610
Bse1I ACTGG 2 cut(s) 481, 713
Bse8I GATNNNNATC 1 cut(s) 636
BseBI CCWGG 1 cut(s) 453
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 615, 696
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 4 cut(s) 223, 362, 487, 688
BseNI ACTGG 2 cut(s) 481, 713
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 162
BseX3I CGGCCG 1 cut(s) 612
BseXI GCAGC 3 cut(s) 421, 592, 679
BseYI CCCAGC 1 cut(s) 657
Bsh1285I CGRYCG 1 cut(s) 615
BshFI GGCC 2 cut(s) 607, 614
BshVI ATCGAT 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 615
BsiSI CCGG 6 cut(s) 12, 48, 168, 217, 575, 611
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 4 cut(s) 223, 362, 487, 688
BsmAI GTCTC 2 cut(s) 28, 442
BsmFI GGGAC 1 cut(s) 630
BsnI GGCC 2 cut(s) 607, 614
Bso31I GGTCTC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 5 cut(s) 34, 55, 213, 559, 637
BspACI CCGC 7 cut(s) 60, 68, 224, 236, 363, 458, 608
BspANI GGCC 2 cut(s) 607, 614
BspDI ATCGAT 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 2 cut(s) 50, 208
BspQI GCTCTTC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 442
BsrBI CCGCTC 1 cut(s) 460
BsrFI RCCGGY 2 cut(s) 574, 610
BsrI ACTGG 2 cut(s) 481, 713
BssAI RCCGGY 2 cut(s) 574, 610
BssECI CCNNGG 2 cut(s) 615, 696
BssMI GATC 5 cut(s) 34, 55, 213, 559, 637
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 31, 644
Bst6I CTCTTC 2 cut(s) 35, 127
BstBAI YACGTR 2 cut(s) 536, 544
BstC8I GCNNGC 3 cut(s) 189, 222, 612
BstENI CCTNNNNNAGG 1 cut(s) 686
BstH2I RGCGCY 2 cut(s) 48, 168
BstHHI GCGC 4 cut(s) 47, 167, 390, 580
BstKTI GATC 5 cut(s) 37, 58, 216, 562, 640
BstMAI GTCTC 2 cut(s) 28, 442
BstMBI GATC 5 cut(s) 34, 55, 213, 559, 637
BstMCI CGRYCG 1 cut(s) 615
BstMWI GCNNNNNNNGC 3 cut(s) 193, 667, 698
BstNI CCWGG 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 451
BstSLI GKGCMC 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 421, 592, 679
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BstZI CGGCCG 1 cut(s) 612
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 2 cut(s) 607, 614
BsuTUI ATCGAT 1 cut(s) 54
BtrI CACGTC 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 706
Cac8I GCNNGC 3 cut(s) 189, 222, 612
CfoI GCGC 4 cut(s) 47, 167, 390, 580
Cfr10I RCCGGY 2 cut(s) 574, 610
Cfr13I GGNCC 2 cut(s) 76, 455
ClaI ATCGAT 1 cut(s) 54
CseI GACGC 2 cut(s) 193, 202
Csp6I GTAC 1 cut(s) 319
CviAII CATG 4 cut(s) 254, 439, 506, 563
CviQI GTAC 1 cut(s) 319
DpnI GATC 5 cut(s) 36, 57, 215, 561, 639
DpnII GATC 5 cut(s) 34, 55, 213, 559, 637
EaeI YGGCCR 2 cut(s) 605, 612
EagI CGGCCG 1 cut(s) 612
Eam1104I CTCTTC 2 cut(s) 35, 127
EarI CTCTTC 2 cut(s) 35, 127
EclXI CGGCCG 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 76, 455
Eco52I CGGCCG 1 cut(s) 612
Eco57I CTGAAG 3 cut(s) 59, 218, 269
Eco72I CACGTG 1 cut(s) 536
EcoNI CCTNNNNNAGG 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 451
FaeI CATG 4 cut(s) 257, 442, 509, 566
FaqI GGGAC 1 cut(s) 630
FatI CATG 4 cut(s) 253, 438, 505, 562
FauI CCCGC 1 cut(s) 67
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 5 cut(s) 237, 435, 581, 608, 693
Fsp4HI GCNGC 5 cut(s) 237, 435, 581, 608, 693
FspBI CTAG 3 cut(s) 264, 431, 464
GlaI GCGC 4 cut(s) 46, 166, 389, 579
GluI GCNGC 5 cut(s) 237, 435, 581, 608, 693
GsaI CCCAGC 1 cut(s) 661
HaeII RGCGCY 2 cut(s) 48, 168
HaeIII GGCC 2 cut(s) 607, 614
HapII CCGG 6 cut(s) 12, 48, 168, 217, 575, 611
HgaI GACGC 2 cut(s) 193, 202
HhaI GCGC 4 cut(s) 47, 167, 390, 580
Hin1II CATG 4 cut(s) 257, 442, 509, 566
Hin6I GCGC 4 cut(s) 45, 165, 388, 578
HinP1I GCGC 4 cut(s) 45, 165, 388, 578
HinfI GANTC 6 cut(s) 51, 71, 409, 422, 587, 678
HpaII CCGG 6 cut(s) 12, 48, 168, 217, 575, 611
HphI GGTGA 2 cut(s) 323, 580
Hpy166II GTNNAC 3 cut(s) 261, 319, 541
Hpy188I TCNGA 3 cut(s) 39, 207, 304
Hpy188III TCNNGA 2 cut(s) 416, 598
Hpy8I GTNNAC 3 cut(s) 261, 319, 541
Hpy99I CGWCG 3 cut(s) 92, 196, 244
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 2 cut(s) 31, 644
HpyCH4IV ACGT 4 cut(s) 315, 535, 543, 551
HpyCH4V TGCA 1 cut(s) 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 667, 698
HpySE526I ACGT 4 cut(s) 315, 535, 543, 551
Hsp92II CATG 4 cut(s) 257, 442, 509, 566
HspAI GCGC 4 cut(s) 45, 165, 388, 578
KroI GCCGGC 1 cut(s) 610
KroNI GCCGGC 1 cut(s) 612
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 5 cut(s) 34, 55, 213, 559, 637
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 341, 465
Lsp1109I GCAGC 3 cut(s) 421, 592, 679
LweI GCATC 1 cut(s) 234
MaeI CTAG 3 cut(s) 264, 431, 464
MaeII ACGT 4 cut(s) 315, 535, 543, 551
MaeIII GTNAC 2 cut(s) 181, 311
MalI GATC 5 cut(s) 36, 57, 215, 561, 639
MbiI CCGCTC 1 cut(s) 460
MboI GATC 5 cut(s) 34, 55, 213, 559, 637
MboII GAAGA 8 cut(s) 52, 114, 220, 223, 284, 385, 559, 643
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 6 cut(s) 7, 295, 305, 323, 335, 366
MlyI GAGTC 1 cut(s) 418
MroNI GCCGGC 1 cut(s) 610
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 1 cut(s) 515
MspI CCGG 6 cut(s) 12, 48, 168, 217, 575, 611
MspR9I CCNGG 1 cut(s) 453
MvaI CCWGG 1 cut(s) 453
MwoI GCNNNNNNNGC 3 cut(s) 193, 667, 698
NaeI GCCGGC 1 cut(s) 612
NdeII GATC 5 cut(s) 34, 55, 213, 559, 637
NgoMIV GCCGGC 1 cut(s) 610
NlaIII CATG 4 cut(s) 257, 442, 509, 566
NlaIV GGNNCC 1 cut(s) 343
NmeAIII GCCGAG 2 cut(s) 640, 721
NmuCI GTSAC 2 cut(s) 181, 311
PciSI GCTCTTC 1 cut(s) 35
PdiI GCCGGC 1 cut(s) 612
PfeI GAWTC 5 cut(s) 51, 71, 422, 587, 678
PkrI GCNGC 5 cut(s) 238, 436, 582, 609, 694
PleI GAGTC 1 cut(s) 417
PmaCI CACGTG 1 cut(s) 536
PmlI CACGTG 1 cut(s) 536
PpsI GAGTC 1 cut(s) 417
Ppu21I YACGTR 2 cut(s) 536, 544
Psp6I CCWGG 1 cut(s) 451
PspCI CACGTG 1 cut(s) 536
PspFI CCCAGC 1 cut(s) 657
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 2 cut(s) 76, 455
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 5 cut(s) 237, 435, 581, 608, 693
Sau3AI GATC 5 cut(s) 34, 55, 213, 559, 637
Sau96I GGNCC 2 cut(s) 76, 455
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 1 cut(s) 162
SetI ASST 8 cut(s) 147, 318, 436, 538, 546, 554, 605, 621
SfaNI GCATC 1 cut(s) 234
SinI GGWCC 2 cut(s) 76, 455
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 2 cut(s) 414, 521
SmoI CTYRAG 2 cut(s) 414, 521
SpeI ACTAGT 1 cut(s) 263
Sse9I AATT 6 cut(s) 7, 295, 305, 323, 335, 366
SsiI CCGC 7 cut(s) 60, 68, 224, 236, 363, 458, 608
SspMI CTAG 3 cut(s) 264, 431, 464
StyD4I CCNGG 1 cut(s) 451
TaaI ACNGT 2 cut(s) 31, 644
TaiI ACGT 4 cut(s) 318, 538, 546, 554
TaqI TCGA 6 cut(s) 54, 87, 111, 425, 473, 590
TaqII GACCGA 1 cut(s) 64
TasI AATT 6 cut(s) 7, 295, 305, 323, 335, 366
TauI GCSGC 2 cut(s) 239, 610
TfiI GAWTC 5 cut(s) 51, 71, 422, 587, 678
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 713
TseFI GTSAC 2 cut(s) 181, 311
TseI GCWGC 3 cut(s) 434, 580, 692
Tsp45I GTSAC 2 cut(s) 181, 311
TspRI CASTG 1 cut(s) 713
VpaK11BI GGWCC 2 cut(s) 76, 455
XagI CCTNNNNNAGG 1 cut(s) 686
XapI RAATTY 2 cut(s) 7, 305
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 3 cut(s) 264, 431, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.