Prupe.2G266100_v2.0.a1

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012379
Physical Location & Seq
Forward (+)
27270234 .. 27273291
3058 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G266100.1

Sequence Viewer

Length: 861 bp
ATGCTGGAAAAGGGAGAGCAGGAAACCATGGTAGAGGAGCTAAATAACAATTTGAAGGAAGTACCACAACAAGTAACCTTCAACTTGAAGACTACTGATCACTTTGTGCTGGTTCATGGCATAAGTGGAGGGGCTTGGTGTTGGTACAAAATCAGATGCCTCATGGAGAATTCAGGCTACAAGGTTTCTTGCGTTGATCTTAAAAGCGCCGGGATCGACCAATCCGATGCGAATTCAGTCTTTTCTTTTGACGATTACAACAAGCCACTGCTGGACTTGTTGTCTGCTCTGCCTGAAAATGAACAGGTAATATTGGTAGGGCACAGCGCTGGAGGGCTCAGCGTAACCCATGCCACTCTCATGTTTCCAAAGAAAATCAGATTAGCAGTGTATGTTGCAGCAACAATGCTGAAACTTGGCTACTCAACTGATCAAGATATCAAAGATGGGGTGCCTGATTTATCTGAATTTGGTGACATATATGAGTTAGGGTTTGGATTGGGATCCAATAAACCTCCAACAAGCGCCATGATCAAGAAAGAATTCCAACGAAAAATCATATACCAAATGAGTCCTCAAGAGGATTCGACACTAGCTGCCATGCTGTTGAGGCCTGGACCGCTCCTAGCAATAACGACAGCCCGTTTTGAGGAGAAGGACGAGGTTGAGAAAGTGCCTCGTGTTTACGTGAAAACGTTGCATGATCGTGTCGTAAAACCAGAGCAACAAGATTCGATGATAAAGAGGTGGCCACCATCTGAGGTGTATGTTTTGGACAGTGACCACAGTCCCTTCTTCTCCACCCCATTTTTGCTTTTTGGCTTCCTTGTAAAAGCAGCAGCTTATGGTGGGCTTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

287

Amino Acids

31.96

Weight (kDa)

5.45

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10870
fragaria_vesca FvH4_7g26180
malus_domestica MD01G1170100.v1.1 MD07G1237000.v1.1 MD11G1052400.v1.1
prunus_persica Prupe.2G266100_v2.0.a1
pyrus_communis pycom01g18280 pycom07g21330
rosa_chinensis RchiOBHm_Chr1g0372631
rosa_laevigata RLG00000026885
rosa_multiflora Rmu_sc0008757.1_g000010 Rmu_ssc0000419.1_g000007
rosa_roxburghii Rroxscaffold_4G00284810
rosa_rugosa Rorug01G0373400
rosa_samantha Rh1AG381900 Rh1BG345300 Rh1CG358700 Rh1DG376500
rosa_wichuraiana Rw1G033590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 451
AccBSI CCGCTC 1 cut(s) 622
AciI CCGC 1 cut(s) 620
AclI AACGTT 1 cut(s) 695
AclWI GGATC 3 cut(s) 221, 498, 511
AcoI YGGCCR 1 cut(s) 749
AcsI RAATTY 4 cut(s) 169, 232, 467, 542
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 2 cut(s) 63, 146
AfeI AGCGCT 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 649
AgsI TTSAA 3 cut(s) 55, 82, 88
AhdI GACNNNNNGTC 1 cut(s) 280
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 3 cut(s) 40, 596, 842
AluI AGCT 3 cut(s) 40, 596, 842
AlwI GGATC 3 cut(s) 221, 498, 511
Aor51HI AGCGCT 1 cut(s) 328
AoxI GGCC 2 cut(s) 611, 749
ApeKI GCWGC 4 cut(s) 398, 596, 836, 839
ApoI RAATTY 4 cut(s) 169, 232, 467, 542
Asp700I GAANNNNTTC 1 cut(s) 542
AspLEI GCGC 3 cut(s) 209, 329, 527
AspS9I GGNCC 1 cut(s) 617
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 485
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 324
BalI TGGCCA 1 cut(s) 751
BamHI GGATCC 1 cut(s) 503
BanI GGYRCC 1 cut(s) 451
BanII GRGCYC 1 cut(s) 339
BauI CACGAG 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 4 cut(s) 410, 583, 848, 851
BccI CCATC 2 cut(s) 440, 763
BciT130I CCWGG 1 cut(s) 615
BclI TGATCA 3 cut(s) 97, 430, 531
BcnI CCSGG 1 cut(s) 211
BfaI CTAG 2 cut(s) 593, 626
BfoI RGCGCY 3 cut(s) 210, 330, 528
BisI GCNGC 4 cut(s) 399, 597, 837, 840
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 4 cut(s) 400, 598, 838, 841
Bme1390I CCNGG 2 cut(s) 211, 615
Bme18I GGWCC 1 cut(s) 617
BmeRI GACNNNNNGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 617
BmiI GGNNCC 2 cut(s) 453, 505
BmrFI CCNGG 2 cut(s) 211, 615
BmsI GCATC 2 cut(s) 146, 217
BoxI GACNNNNGTC 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 211
BsaAI YACGTR 1 cut(s) 688
BsaBI GATNNNNATC 1 cut(s) 502
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse8I GATNNNNATC 1 cut(s) 502
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 502
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMII CTCAG 2 cut(s) 352, 750
BseRI GAGGAG 2 cut(s) 50, 665
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 4 cut(s) 410, 583, 848, 851
BshFI GGCC 2 cut(s) 613, 751
BshNI GGYRCC 1 cut(s) 451
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 774
BslI CCNNNNNNNGG 1 cut(s) 649
BsmFI GGGAC 1 cut(s) 774
BsnI GGCC 2 cut(s) 613, 751
Bsp1286I GDGCHC 2 cut(s) 324, 339
Bsp143I GATC 7 cut(s) 97, 196, 213, 430, 503, 531, 703
Bsp1720I GCTNAGC 1 cut(s) 338
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 1 cut(s) 620
BspANI GGCC 2 cut(s) 613, 751
BspCNI CTCAG 2 cut(s) 351, 751
BspLI GGNNCC 2 cut(s) 453, 505
BspPI GGATC 3 cut(s) 221, 498, 511
BspT107I GGYRCC 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 622
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 7 cut(s) 97, 196, 213, 430, 503, 531, 703
BssSI CACGAG 1 cut(s) 678
BssT1I CCWWGG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 678
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 2 cut(s) 779, 788
BstBAI YACGTR 1 cut(s) 688
BstDEI CTNAG 2 cut(s) 338, 759
BstDSI CCRYGG 1 cut(s) 27
BstH2I RGCGCY 3 cut(s) 210, 330, 528
BstHHI GCGC 3 cut(s) 209, 329, 527
BstKTI GATC 7 cut(s) 100, 199, 216, 433, 506, 534, 706
BstMBI GATC 7 cut(s) 97, 196, 213, 430, 503, 531, 703
BstMWI GCNNNNNNNGC 2 cut(s) 610, 619
BstNI CCWGG 1 cut(s) 615
BstPAI GACNNNNGTC 1 cut(s) 786
BstSCI CCNGG 2 cut(s) 209, 613
BstSLI GKGCMC 1 cut(s) 324
BstV1I GCAGC 4 cut(s) 410, 583, 848, 851
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BsuRI GGCC 2 cut(s) 613, 751
BtgI CCRYGG 1 cut(s) 27
BtsI GCAGTG 2 cut(s) 266, 393
BtsIMutI CAGTG 3 cut(s) 266, 393, 784
CfoI GCGC 3 cut(s) 209, 329, 527
Cfr13I GGNCC 1 cut(s) 617
Csp6I GTAC 2 cut(s) 62, 145
CviAII CATG 8 cut(s) 28, 116, 163, 350, 361, 529, 601, 701
CviQI GTAC 2 cut(s) 62, 145
DdeI CTNAG 2 cut(s) 338, 759
DpnI GATC 7 cut(s) 99, 198, 215, 432, 505, 533, 705
DpnII GATC 7 cut(s) 97, 196, 213, 430, 503, 531, 703
DraIII CACNNNGTG 1 cut(s) 106
DriI GACNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 749
Eam1105I GACNNNNNGTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 27
Eco147I AGGCCT 1 cut(s) 613
Eco24I GRGCYC 1 cut(s) 339
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 617
Eco47III AGCGCT 1 cut(s) 328
EcoRI GAATTC 3 cut(s) 169, 232, 542
EcoRII CCWGG 1 cut(s) 613
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 8 cut(s) 31, 119, 166, 353, 364, 532, 604, 704
FaqI GGGAC 1 cut(s) 774
FatI CATG 8 cut(s) 27, 115, 162, 349, 360, 528, 600, 700
FbaI TGATCA 3 cut(s) 97, 430, 531
Fnu4HI GCNGC 4 cut(s) 399, 597, 837, 840
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 4 cut(s) 399, 597, 837, 840
FspBI CTAG 2 cut(s) 593, 626
GlaI GCGC 3 cut(s) 208, 328, 526
GluI GCNGC 4 cut(s) 399, 597, 837, 840
GsuI CTGGAG 1 cut(s) 351
HaeII RGCGCY 3 cut(s) 210, 330, 528
HaeIII GGCC 2 cut(s) 613, 751
HapII CCGG 1 cut(s) 210
HhaI GCGC 3 cut(s) 209, 329, 527
Hin1II CATG 8 cut(s) 31, 119, 166, 353, 364, 532, 604, 704
Hin6I GCGC 3 cut(s) 207, 327, 525
HinP1I GCGC 3 cut(s) 207, 327, 525
HinfI GANTC 3 cut(s) 571, 584, 731
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 1 cut(s) 685
Hpy188I TCNGA 5 cut(s) 155, 226, 380, 466, 760
Hpy188III TCNNGA 3 cut(s) 434, 535, 578
Hpy8I GTNNAC 1 cut(s) 685
HpyAV CCTTC 4 cut(s) 49, 88, 649, 802
HpyCH4III ACNGT 2 cut(s) 779, 788
HpyCH4IV ACGT 2 cut(s) 687, 695
HpyCH4V TGCA 2 cut(s) 398, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 610, 619
HpyF3I CTNAG 2 cut(s) 338, 759
HpySE526I ACGT 2 cut(s) 687, 695
Hsp92II CATG 8 cut(s) 31, 119, 166, 353, 364, 532, 604, 704
HspAI GCGC 3 cut(s) 207, 327, 525
Ksp22I TGATCA 3 cut(s) 97, 430, 531
Kzo9I GATC 7 cut(s) 97, 196, 213, 430, 503, 531, 703
LmnI GCTCC 2 cut(s) 37, 627
Lsp1109I GCAGC 4 cut(s) 410, 583, 848, 851
LweI GCATC 2 cut(s) 146, 217
MaeI CTAG 2 cut(s) 593, 626
MaeII ACGT 2 cut(s) 687, 695
MaeIII GTNAC 4 cut(s) 73, 343, 473, 779
MalI GATC 7 cut(s) 99, 198, 215, 432, 505, 533, 705
MbiI CCGCTC 1 cut(s) 622
MboI GATC 7 cut(s) 97, 196, 213, 430, 503, 531, 703
MboII GAAGA 2 cut(s) 100, 787
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 324, 339
MlsI TGGCCA 1 cut(s) 751
MluCI AATT 5 cut(s) 49, 169, 232, 467, 542
MluNI TGGCCA 1 cut(s) 751
MlyI GAGTC 1 cut(s) 580
MmeI TCCRAC 2 cut(s) 542, 571
Mox20I TGGCCA 1 cut(s) 751
MroXI GAANNNNTTC 1 cut(s) 542
MscI TGGCCA 1 cut(s) 751
MseI TTAA 2 cut(s) 201, 855
MslI CAYNNNNRTG 2 cut(s) 359, 705
Msp20I TGGCCA 1 cut(s) 751
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 211, 615
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 2 cut(s) 610, 619
NciI CCSGG 1 cut(s) 211
NcoI CCATGG 1 cut(s) 27
NdeII GATC 7 cut(s) 97, 196, 213, 430, 503, 531, 703
NlaIII CATG 8 cut(s) 31, 119, 166, 353, 364, 532, 604, 704
NlaIV GGNNCC 2 cut(s) 453, 505
NmuCI GTSAC 2 cut(s) 473, 779
PceI AGGCCT 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 2 cut(s) 584, 731
PkrI GCNGC 4 cut(s) 400, 598, 838, 841
PleI GAGTC 1 cut(s) 579
PpsI GAGTC 1 cut(s) 579
Ppu21I YACGTR 1 cut(s) 688
PshAI GACNNNNGTC 1 cut(s) 786
Psp1406I AACGTT 1 cut(s) 695
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 2 cut(s) 453, 505
PspPI GGNCC 1 cut(s) 617
PsuI RGATCY 1 cut(s) 503
RsaI GTAC 2 cut(s) 63, 146
RsaNI GTAC 2 cut(s) 62, 145
RseI CAYNNNNRTG 2 cut(s) 359, 705
SaqAI TTAA 2 cut(s) 201, 855
SatI GCNGC 4 cut(s) 399, 597, 837, 840
Sau3AI GATC 7 cut(s) 97, 196, 213, 430, 503, 531, 703
Sau96I GGNCC 1 cut(s) 617
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 2 cut(s) 211, 615
SduI GDGCHC 2 cut(s) 324, 339
SfaNI GCATC 2 cut(s) 146, 217
SinI GGWCC 1 cut(s) 617
SmiMI CAYNNNNRTG 2 cut(s) 359, 705
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 5 cut(s) 49, 169, 232, 467, 542
SseBI AGGCCT 1 cut(s) 613
SsiI CCGC 1 cut(s) 620
SspI AATATT 1 cut(s) 312
SspMI CTAG 2 cut(s) 593, 626
StuI AGGCCT 1 cut(s) 613
StyD4I CCNGG 2 cut(s) 209, 613
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 779, 788
TaiI ACGT 2 cut(s) 690, 698
TaqI TCGA 3 cut(s) 216, 587, 734
TasI AATT 5 cut(s) 49, 169, 232, 467, 542
TfiI GAWTC 2 cut(s) 584, 731
Tru1I TTAA 2 cut(s) 201, 855
Tru9I TTAA 2 cut(s) 201, 855
TscAI CASTG 3 cut(s) 273, 393, 784
TseFI GTSAC 2 cut(s) 473, 779
TseI GCWGC 4 cut(s) 398, 596, 836, 839
Tsp45I GTSAC 2 cut(s) 473, 779
TspDTI ATGAA 2 cut(s) 104, 315
TspRI CASTG 3 cut(s) 273, 393, 784
VpaK11BI GGWCC 1 cut(s) 617
XapI RAATTY 4 cut(s) 169, 232, 467, 542
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 2 cut(s) 593, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.